Wall clock time and date at job start Mon Mar 30 2020 00:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00172 * 2 1 4 4 H 1.48498 * 109.47116 * 269.99812 * 3 2 1 5 5 H 1.48498 * 109.47361 * 29.99905 * 3 2 1 6 6 H 1.48499 * 109.47392 * 149.99885 * 3 2 1 7 7 C 1.38819 * 119.99564 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00397 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99685 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00288 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47716 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47535 * 179.97438 * 11 10 9 13 13 N 1.46494 * 109.47001 * 180.02562 * 12 11 10 14 14 C 1.34784 * 119.99635 * 180.02562 * 13 12 11 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 12 17 17 C 1.50697 * 109.47266 * 180.02562 * 16 14 13 18 18 C 1.33630 * 126.03963 * 89.99962 * 17 16 14 19 19 N 1.31783 * 114.50354 * 180.02562 * 18 17 16 20 20 C 1.29025 * 117.12171 * 359.97438 * 19 18 17 21 21 S 1.70976 * 110.16656 * 359.72929 * 20 19 18 22 22 H 0.97003 * 120.00208 * 0.02562 * 1 2 3 23 23 H 0.97003 * 119.99793 * 0.02562 * 9 7 2 24 24 H 1.09005 * 109.46784 * 60.00109 * 10 9 7 25 25 H 1.09004 * 109.47419 * 300.00466 * 10 9 7 26 26 H 1.09005 * 109.46889 * 60.00193 * 11 10 9 27 27 H 1.08996 * 109.47223 * 300.00972 * 11 10 9 28 28 H 1.09005 * 109.46767 * 60.00250 * 12 11 10 29 29 H 1.09002 * 109.47113 * 300.00590 * 12 11 10 30 30 H 0.96995 * 120.00292 * 0.27801 * 13 12 11 31 31 H 1.09004 * 109.46932 * 300.00223 * 16 14 13 32 32 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 33 33 H 1.08005 * 122.74961 * 359.97438 * 18 17 16 34 34 H 1.08003 * 124.92050 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4709 0.0011 11 6 5.6163 -2.1915 -0.0004 12 6 6.3813 -3.5165 0.0014 13 7 7.8215 -3.2488 0.0006 14 6 8.6974 -4.2733 0.0014 15 8 8.2930 -5.4167 0.0033 16 6 10.1790 -3.9980 0.0011 17 6 10.9325 -5.3031 0.0015 18 6 11.3254 -5.9844 -1.0788 19 7 11.9706 -7.1028 -0.8149 20 6 12.1441 -7.4025 0.4280 21 16 11.4578 -6.1963 1.4266 22 1 -0.4850 0.8401 -0.0004 23 1 3.8645 -0.3622 -0.0004 24 1 3.8484 -3.0435 -0.8882 25 1 3.8490 -3.0416 0.8918 26 1 5.8803 -1.6187 0.8887 27 1 5.8789 -1.6210 -0.8912 28 1 6.1173 -4.0896 -0.8874 29 1 6.1185 -4.0866 0.8926 30 1 8.1449 -2.3343 0.0031 31 1 10.4423 -3.4271 -0.8894 32 1 10.4424 -3.4257 0.8905 33 1 11.1296 -5.6466 -2.0858 34 1 12.6537 -8.2849 0.7858 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160486708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:30 Heat of formation + Delta-G solvation = -11.453558 kcal Electronic energy + Delta-G solvation = -16987.997857 eV Core-core repulsion = 14046.865468 eV Total energy + Delta-G solvation = -2941.132389 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.02474 -40.20477 -37.64543 -35.95689 -34.06620 -33.65314 -31.70485 -28.91941 -26.99951 -25.46337 -23.93148 -22.69014 -21.73533 -20.92487 -19.68375 -19.05082 -18.02788 -17.28280 -16.93191 -16.55647 -16.26714 -15.74112 -15.55563 -15.30111 -14.84506 -14.81855 -14.46262 -14.16282 -13.86171 -13.75873 -13.27465 -12.87022 -12.54092 -12.49881 -12.15079 -12.07658 -12.00272 -11.81015 -11.09135 -10.98249 -10.62964 -10.20306 -10.10752 -9.85987 -9.32567 -8.03621 -5.38934 -0.25718 0.45317 0.80255 1.38462 1.44301 1.51694 1.61744 1.82490 2.26786 2.49236 3.27433 3.43717 3.56295 3.69172 3.96076 4.07526 4.15559 4.24896 4.31161 4.39026 4.57874 4.70826 4.72488 4.77700 4.89400 5.18882 5.25531 5.28921 5.42592 5.74067 6.19869 6.55858 6.74831 7.06838 7.25421 7.81160 8.02423 9.17905 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.058379 B = 0.002581 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.506138 B =10846.958510 C =10996.136023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.069 4.069 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.244 1.244 7 C -0.243 4.243 8 H 0.051 0.949 9 N -0.758 5.758 10 C 0.153 3.847 11 C -0.121 4.121 12 C 0.131 3.869 13 N -0.714 5.714 14 C 0.508 3.492 15 O -0.582 6.582 16 C -0.057 4.057 17 C -0.211 4.211 18 C 0.024 3.976 19 N -0.505 5.505 20 C 0.011 3.989 21 S 0.148 5.852 22 H 0.259 0.741 23 H 0.370 0.630 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.420 0.580 31 H 0.149 0.851 32 H 0.137 0.863 33 H 0.182 0.818 34 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.956 -6.886 2.344 31.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.261 4.261 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.168 1.168 7 C -0.374 4.374 8 H 0.069 0.931 9 N -0.404 5.404 10 C 0.026 3.974 11 C -0.159 4.159 12 C 0.006 3.994 13 N -0.367 5.367 14 C 0.295 3.705 15 O -0.462 6.462 16 C -0.099 4.099 17 C -0.332 4.332 18 C -0.127 4.127 19 N -0.219 5.219 20 C -0.285 4.285 21 S 0.401 5.599 22 H 0.068 0.932 23 H 0.203 0.797 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.257 0.743 31 H 0.167 0.833 32 H 0.155 0.845 33 H 0.199 0.801 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 30.636 -8.079 3.023 31.828 hybrid contribution -0.522 1.239 -0.939 1.640 sum 30.115 -6.839 2.084 30.952 Atomic orbital electron populations 1.69911 1.07406 1.26916 1.59358 1.25667 0.96280 1.01858 1.02255 0.85269 0.78771 0.78621 0.78254 1.20183 1.22347 1.16787 1.19041 0.82900 0.93482 1.41964 0.93065 1.42644 1.02430 1.04246 1.91106 1.20667 0.90905 0.87516 0.98312 1.21757 0.93120 0.96974 1.04094 1.21054 0.79667 0.96910 1.01730 1.45849 1.05842 1.10265 1.74727 1.21071 0.89530 0.84628 0.75268 1.90740 1.81091 1.23384 1.50968 1.20163 0.87644 0.93048 1.09011 1.25592 1.08222 1.03827 0.95589 1.21954 0.98891 0.90812 1.00995 1.66324 1.17407 1.17695 1.20510 1.28872 1.03819 1.04950 0.90893 1.83902 1.49105 1.15989 1.10928 0.93246 0.79680 0.95886 0.95938 0.89813 0.89707 0.92340 0.92353 0.74266 0.83326 0.84515 0.80117 0.75844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.47 13.97 21.65 0.30 -63.17 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 3 Si 0.96 44.16 27.73 68.60 1.90 46.06 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.24 -9.69 6.52 99.48 0.65 -9.04 16 7 C -0.24 -13.97 10.47 84.04 0.88 -13.09 16 8 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 9 N -0.76 -34.53 5.41 -343.46 -1.86 -36.39 16 10 C 0.15 5.52 6.26 86.38 0.54 6.06 16 11 C -0.12 -2.90 5.44 30.59 0.17 -2.73 16 12 C 0.13 2.94 5.67 86.38 0.49 3.43 16 13 N -0.71 -11.46 5.56 -463.05 -2.57 -14.03 16 14 C 0.51 9.72 7.82 87.66 0.69 10.41 16 15 O -0.58 -17.40 16.03 -3.03 -0.05 -17.45 16 16 C -0.06 -0.59 6.24 29.10 0.18 -0.41 16 17 C -0.21 -3.43 5.09 24.64 0.13 -3.30 16 18 C 0.02 0.46 11.25 83.65 0.94 1.40 16 19 N -0.51 -10.69 10.54 -203.75 -2.15 -12.84 16 20 C 0.01 0.18 12.23 130.65 1.60 1.77 16 21 S 0.15 2.17 23.22 -56.49 -1.31 0.85 16 22 H 0.26 15.78 8.31 -92.71 -0.77 15.00 16 23 H 0.37 15.42 5.53 -92.71 -0.51 14.90 16 24 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.42 3.65 8.47 -92.71 -0.79 2.86 16 31 H 0.15 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.18 2.84 8.06 -2.91 -0.02 2.82 16 34 H 0.23 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -80.71 310.80 0.11 -80.60 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -0.23 Total: 16.44 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 6.08 Total: -0.07 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -6.28 Total: -126.43 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.05 Total: -17.45 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.90 Total: 46.06 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.31 Total: 0.85 kcal Total: -80.71 0.11 -80.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160486708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.144 kcal (2) G-P(sol) polarization free energy of solvation -80.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds