Wall clock time and date at job start Mon Mar 30 2020 01:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47187 * 2 1 4 4 S 1.81411 * 109.46879 * 240.00660 * 2 1 3 5 5 C 1.52997 * 109.47748 * 120.00689 * 2 1 3 6 6 N 1.46494 * 109.47154 * 64.99436 * 5 2 1 7 7 C 1.38801 * 120.00142 * 180.02562 * 6 5 2 8 8 C 1.38634 * 120.21604 * 359.72868 * 7 6 5 9 9 C 1.38230 * 120.21574 * 179.74245 * 8 7 6 10 10 C 1.38785 * 120.66506 * 0.55932 * 9 8 7 11 11 C 1.37741 * 120.42582 * 359.69590 * 10 9 8 12 12 F 1.35106 * 120.11557 * 180.02562 * 11 10 9 13 13 C 1.40994 * 119.76831 * 0.02562 * 11 10 9 14 14 C 1.40990 * 120.32340 * 180.02562 * 13 11 10 15 15 H 1.07995 * 119.99863 * 136.36613 * 14 13 11 16 16 C 1.39919 * 120.00048 * 316.37328 * 14 13 11 17 17 N 1.30904 * 120.00172 * 160.68923 * 16 14 13 18 18 Si 1.86795 * 119.99590 * 340.68195 * 16 14 13 19 19 H 1.48507 * 109.47144 * 95.27611 * 18 16 14 20 20 H 1.48504 * 109.47073 * 215.27008 * 18 16 14 21 21 H 1.48498 * 109.47542 * 335.27531 * 18 16 14 22 22 H 1.09004 * 109.46743 * 299.99693 * 1 2 3 23 23 H 1.08994 * 109.47199 * 59.99447 * 1 2 3 24 24 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47388 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.47669 * 300.00326 * 3 2 1 27 27 H 1.09004 * 109.47028 * 60.00481 * 3 2 1 28 28 H 1.34500 * 102.99976 * 179.97438 * 4 2 1 29 29 H 1.08997 * 109.47637 * 185.00208 * 5 2 1 30 30 H 1.09006 * 109.46527 * 304.99747 * 5 2 1 31 31 H 0.96999 * 120.00131 * 0.02562 * 6 5 2 32 32 H 1.07998 * 119.88770 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.66602 * 180.27307 * 9 8 7 34 34 H 1.07991 * 119.78895 * 179.71986 * 10 9 8 35 35 H 0.96991 * 120.00101 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8550 -1.4813 5 6 2.0401 -0.7214 1.2491 6 7 1.6525 -2.1329 1.1903 7 6 2.0060 -2.9931 2.2207 8 6 2.7307 -2.5225 3.3048 9 6 3.0781 -3.3781 4.3335 10 6 2.7186 -4.7179 4.2918 11 6 2.0030 -5.2152 3.2251 12 9 1.6559 -6.5205 3.1911 13 6 1.6341 -4.3574 2.1687 14 6 0.9011 -4.8539 1.0714 15 1 0.0697 -4.2886 0.6771 16 6 1.2509 -6.0792 0.4933 17 7 0.3858 -6.7237 -0.2482 18 14 2.9523 -6.7951 0.7797 19 1 2.9016 -7.7540 1.9126 20 1 3.4051 -7.5007 -0.4461 21 1 3.9027 -5.7000 1.1002 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1301 1.4425 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9563 0.8901 28 1 3.4710 -0.7788 -1.3504 29 1 3.1264 -0.6444 1.2950 30 1 1.6055 -0.2618 2.1369 31 1 1.1489 -2.4664 0.4314 32 1 3.0207 -1.4831 3.3480 33 1 3.6390 -3.0010 5.1760 34 1 3.0014 -5.3747 5.1010 35 1 0.6284 -7.5729 -0.6492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170309480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:52 Heat of formation + Delta-G solvation = -24.264839 kcal Electronic energy + Delta-G solvation = -18775.893656 eV Core-core repulsion = 15814.285767 eV Total energy + Delta-G solvation = -2961.607889 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.50537 -38.39381 -36.57178 -33.44910 -33.13046 -30.26801 -28.23667 -27.47901 -25.66336 -24.62375 -21.41591 -20.44079 -20.23846 -17.64811 -17.19831 -16.66901 -15.90035 -15.30323 -14.89045 -14.49812 -14.28086 -14.22467 -13.88092 -13.47134 -13.26174 -12.96354 -12.76845 -12.28687 -11.98744 -11.70248 -11.65084 -11.57537 -11.29950 -11.12285 -10.93831 -10.65661 -10.30571 -10.07890 -9.94820 -9.54218 -9.18304 -8.86987 -7.88043 -7.43307 -6.72154 -6.51589 -4.26346 1.69193 2.49424 2.66383 2.82236 3.30145 3.34912 3.41861 4.17343 4.20067 4.55089 4.60732 4.77831 4.96427 5.23943 5.40891 5.48709 5.66571 5.70743 5.76027 5.80788 5.83639 5.90105 5.93326 6.21462 6.23424 6.28693 6.73108 7.03222 7.17504 7.28192 7.53707 7.63640 8.00295 8.18447 8.43115 8.71309 8.78729 8.94964 10.31091 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.019994 B = 0.007359 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.069861 B = 3803.913771 C = 4636.415991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.025 4.025 3 C -0.141 4.141 4 S -0.224 6.224 5 C 0.140 3.860 6 N -0.733 5.733 7 C 0.167 3.833 8 C -0.194 4.194 9 C -0.155 4.155 10 C -0.170 4.170 11 C 0.007 3.993 12 F -0.146 7.146 13 C 0.019 3.981 14 C -0.467 4.467 15 H 0.091 0.909 16 C 0.096 3.904 17 N -0.817 5.817 18 Si 0.902 3.098 19 H -0.262 1.262 20 H -0.295 1.295 21 H -0.256 1.256 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.411 0.589 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.868 12.953 0.584 13.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.136 4.136 3 C -0.200 4.200 4 S -0.072 6.072 5 C 0.012 3.988 6 N -0.368 5.368 7 C 0.065 3.935 8 C -0.218 4.218 9 C -0.174 4.174 10 C -0.191 4.191 11 C -0.015 4.015 12 F -0.125 7.125 13 C 0.014 3.986 14 C -0.497 4.497 15 H 0.108 0.892 16 C -0.121 4.121 17 N -0.442 5.442 18 Si 0.728 3.272 19 H -0.187 1.187 20 H -0.223 1.223 21 H -0.180 1.180 22 H 0.092 0.908 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.250 0.750 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.866 12.434 -0.359 12.765 hybrid contribution 1.409 -0.284 0.718 1.607 sum 4.275 12.150 0.359 12.885 Atomic orbital electron populations 1.21666 0.90291 1.04092 1.02634 1.22820 1.00264 0.96937 0.93602 1.22149 1.00881 0.93593 1.03374 1.87532 1.08511 1.78236 1.32883 1.21293 0.98191 0.83997 0.95347 1.44225 1.63453 1.05273 1.23894 1.17716 0.96563 0.90437 0.88786 1.20161 1.07156 0.98453 0.96059 1.20021 1.05564 0.92670 0.99181 1.20432 1.04177 0.96202 0.98299 1.17657 1.08007 0.79228 0.96604 1.91214 1.91256 1.33834 1.96241 1.17261 0.97077 0.89946 0.94354 1.18766 1.14220 1.03886 1.12816 0.89171 1.25873 0.98441 0.94934 0.92857 1.69716 1.34600 1.13317 1.26615 0.86587 0.82760 0.80600 0.77234 1.18663 1.22308 1.17990 0.90809 0.91485 0.90665 0.92739 0.90820 0.91184 0.95371 0.93653 0.91860 0.74982 0.88416 0.88083 0.87947 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 8.35 37.16 0.31 -1.16 16 2 C -0.03 -0.31 0.88 -90.62 -0.08 -0.39 16 3 C -0.14 -1.29 8.48 37.16 0.32 -0.98 16 4 S -0.22 -3.24 23.48 -107.50 -2.52 -5.77 16 5 C 0.14 2.01 3.80 -4.05 -0.02 1.99 16 6 N -0.73 -13.86 5.02 -58.23 -0.29 -14.15 16 7 C 0.17 3.69 6.68 -83.32 -0.56 3.14 16 8 C -0.19 -3.91 9.29 -39.44 -0.37 -4.27 16 9 C -0.15 -3.11 10.03 -39.38 -0.40 -3.50 16 10 C -0.17 -3.78 9.99 -39.56 -0.40 -4.17 16 11 C 0.01 0.17 5.65 -38.72 -0.22 -0.05 16 12 F -0.15 -3.89 12.91 2.25 0.03 -3.86 16 13 C 0.02 0.49 4.69 -106.57 -0.50 -0.01 16 14 C -0.47 -12.69 8.42 -37.91 -0.32 -13.01 16 15 H 0.09 2.52 7.57 -52.49 -0.40 2.12 16 16 C 0.10 2.66 4.98 -17.32 -0.09 2.57 16 17 N -0.82 -22.86 13.93 55.55 0.77 -22.08 16 18 Si 0.90 22.69 24.72 -169.99 -4.20 18.49 16 19 H -0.26 -6.62 6.29 56.52 0.36 -6.27 16 20 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.26 -6.56 7.11 56.52 0.40 -6.16 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 1.03 7.18 -51.93 -0.37 0.66 16 25 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.18 9.07 97.61 0.89 2.07 16 29 H 0.05 0.66 7.93 -51.93 -0.41 0.25 16 30 H 0.06 0.85 7.95 -51.93 -0.41 0.43 16 31 H 0.41 8.22 5.48 -40.82 -0.22 8.00 16 32 H 0.10 1.69 6.70 -52.49 -0.35 1.33 16 33 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 35 H 0.28 7.25 8.30 -40.82 -0.34 6.91 16 LS Contribution 298.83 15.07 4.50 4.50 Total: -1.00 -28.78 298.83 -7.44 -36.23 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -3.42 Total: 6.48 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -2.31 Total: -19.84 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.48 Total: -36.23 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.03 Total: -3.86 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.20 Total: 18.49 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.52 Total: -5.77 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.78 -7.44 -36.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170309480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.963 kcal (2) G-P(sol) polarization free energy of solvation -28.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds