Wall clock time and date at job start Mon Mar 30 2020 01:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47187 * 2 1 4 4 S 1.81411 * 109.46879 * 240.00660 * 2 1 3 5 5 C 1.52997 * 109.47748 * 120.00689 * 2 1 3 6 6 N 1.46494 * 109.47154 * 64.99436 * 5 2 1 7 7 C 1.38801 * 120.00142 * 180.02562 * 6 5 2 8 8 C 1.38634 * 120.21604 * 359.72868 * 7 6 5 9 9 C 1.38230 * 120.21574 * 179.74245 * 8 7 6 10 10 C 1.38785 * 120.66506 * 0.55932 * 9 8 7 11 11 C 1.37741 * 120.42582 * 359.69590 * 10 9 8 12 12 F 1.35106 * 120.11557 * 180.02562 * 11 10 9 13 13 C 1.40994 * 119.76831 * 0.02562 * 11 10 9 14 14 C 1.40990 * 120.32340 * 180.02562 * 13 11 10 15 15 H 1.07995 * 119.99863 * 136.36613 * 14 13 11 16 16 C 1.39919 * 120.00048 * 316.37328 * 14 13 11 17 17 N 1.30904 * 120.00172 * 160.68923 * 16 14 13 18 18 Si 1.86795 * 119.99590 * 340.68195 * 16 14 13 19 19 H 1.48507 * 109.47144 * 95.27611 * 18 16 14 20 20 H 1.48504 * 109.47073 * 215.27008 * 18 16 14 21 21 H 1.48498 * 109.47542 * 335.27531 * 18 16 14 22 22 H 1.09004 * 109.46743 * 299.99693 * 1 2 3 23 23 H 1.08994 * 109.47199 * 59.99447 * 1 2 3 24 24 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47388 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.47669 * 300.00326 * 3 2 1 27 27 H 1.09004 * 109.47028 * 60.00481 * 3 2 1 28 28 H 1.34500 * 102.99976 * 179.97438 * 4 2 1 29 29 H 1.08997 * 109.47637 * 185.00208 * 5 2 1 30 30 H 1.09006 * 109.46527 * 304.99747 * 5 2 1 31 31 H 0.96999 * 120.00131 * 0.02562 * 6 5 2 32 32 H 1.07998 * 119.88770 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.66602 * 180.27307 * 9 8 7 34 34 H 1.07991 * 119.78895 * 179.71986 * 10 9 8 35 35 H 0.96991 * 120.00101 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8550 -1.4813 5 6 2.0401 -0.7214 1.2491 6 7 1.6525 -2.1329 1.1903 7 6 2.0060 -2.9931 2.2207 8 6 2.7307 -2.5225 3.3048 9 6 3.0781 -3.3781 4.3335 10 6 2.7186 -4.7179 4.2918 11 6 2.0030 -5.2152 3.2251 12 9 1.6559 -6.5205 3.1911 13 6 1.6341 -4.3574 2.1687 14 6 0.9011 -4.8539 1.0714 15 1 0.0697 -4.2886 0.6771 16 6 1.2509 -6.0792 0.4933 17 7 0.3858 -6.7237 -0.2482 18 14 2.9523 -6.7951 0.7797 19 1 2.9016 -7.7540 1.9126 20 1 3.4051 -7.5007 -0.4461 21 1 3.9027 -5.7000 1.1002 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1301 1.4425 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9563 0.8901 28 1 3.4710 -0.7788 -1.3504 29 1 3.1264 -0.6444 1.2950 30 1 1.6055 -0.2618 2.1369 31 1 1.1489 -2.4664 0.4314 32 1 3.0207 -1.4831 3.3480 33 1 3.6390 -3.0010 5.1760 34 1 3.0014 -5.3747 5.1010 35 1 0.6284 -7.5729 -0.6492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170309480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:51 Heat of formation + Delta-G solvation = -41.457064 kcal Electronic energy + Delta-G solvation = -18776.639167 eV Core-core repulsion = 15814.285767 eV Total energy + Delta-G solvation = -2962.353400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.49776 -39.97545 -37.83516 -35.35926 -34.56692 -32.08976 -29.78918 -28.35146 -27.23642 -26.19972 -22.97933 -22.08279 -21.54780 -19.61146 -18.44428 -18.20545 -17.45565 -17.16723 -16.16758 -16.08923 -16.05096 -15.77224 -15.51721 -14.96162 -14.63877 -14.48318 -13.97559 -13.71179 -13.41110 -13.29673 -13.08313 -12.85802 -12.67407 -12.45275 -12.27789 -12.11377 -12.08695 -11.94974 -11.41515 -11.07137 -10.97867 -10.61545 -9.27618 -9.03380 -8.73665 -8.16041 -6.27050 0.63855 0.69052 0.91326 1.28361 1.33661 1.39093 1.73626 2.17701 2.68292 2.82833 3.36726 3.54010 3.79962 3.98869 4.02097 4.34243 4.54242 4.58201 4.62293 4.65752 4.76463 4.80598 4.85295 4.92043 4.98554 5.19241 5.27006 5.31790 5.45966 5.53321 5.72534 5.88344 6.15129 6.36233 6.55138 6.90405 7.00725 7.12889 8.35357 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.019994 B = 0.007359 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.069861 B = 3803.913771 C = 4636.415991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.011 4.011 3 C -0.135 4.135 4 S -0.269 6.269 5 C 0.133 3.867 6 N -0.734 5.734 7 C 0.174 3.826 8 C -0.197 4.197 9 C -0.121 4.121 10 C -0.193 4.193 11 C -0.010 4.010 12 F -0.162 7.162 13 C -0.021 4.021 14 C -0.485 4.485 15 H 0.062 0.938 16 C 0.059 3.941 17 N -0.864 5.864 18 Si 0.943 3.057 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.263 1.263 22 H 0.096 0.904 23 H 0.079 0.921 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.402 0.598 32 H 0.138 0.862 33 H 0.148 0.852 34 H 0.125 0.875 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.641 16.097 2.710 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.121 4.121 3 C -0.194 4.194 4 S -0.117 6.117 5 C 0.007 3.993 6 N -0.366 5.366 7 C 0.069 3.931 8 C -0.221 4.221 9 C -0.140 4.140 10 C -0.214 4.214 11 C -0.031 4.031 12 F -0.142 7.142 13 C -0.027 4.027 14 C -0.516 4.516 15 H 0.080 0.920 16 C -0.152 4.152 17 N -0.493 5.493 18 Si 0.769 3.231 19 H -0.193 1.193 20 H -0.212 1.212 21 H -0.187 1.187 22 H 0.114 0.886 23 H 0.098 0.902 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.240 0.760 32 H 0.156 0.844 33 H 0.165 0.835 34 H 0.143 0.857 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.652 15.620 1.762 16.393 hybrid contribution 0.918 -0.994 0.270 1.380 sum 5.569 14.626 2.032 15.782 Atomic orbital electron populations 1.21691 0.89924 1.02653 1.04372 1.22918 1.00354 0.98079 0.90798 1.22126 1.01066 0.91172 1.04996 1.87785 1.09175 1.79439 1.35272 1.21610 0.98803 0.81527 0.97385 1.44496 1.62458 1.06959 1.22688 1.17992 0.95593 0.89545 0.89975 1.20620 1.05974 1.00520 0.94949 1.20659 1.02334 0.91409 0.99584 1.20765 1.04631 0.97847 0.98144 1.18200 1.08406 0.78648 0.97838 1.91168 1.91551 1.35057 1.96389 1.17442 0.99000 0.91964 0.94276 1.18672 1.14613 1.04210 1.14142 0.91971 1.26360 1.00293 0.95525 0.93053 1.69758 1.35774 1.14367 1.29407 0.85943 0.80365 0.79649 0.77140 1.19305 1.21193 1.18706 0.88559 0.90238 0.93662 0.92463 0.89926 0.88819 0.94825 0.92941 0.89536 0.75999 0.84450 0.83472 0.85734 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 8.35 71.98 0.60 -2.08 16 2 C -0.01 -0.24 0.88 -10.80 -0.01 -0.25 16 3 C -0.13 -1.94 8.48 71.98 0.61 -1.33 16 4 S -0.27 -7.63 23.48 -56.49 -1.33 -8.96 16 5 C 0.13 3.38 3.80 86.38 0.33 3.71 16 6 N -0.73 -26.83 5.02 -338.14 -1.70 -28.53 16 7 C 0.17 7.36 6.68 38.94 0.26 7.62 16 8 C -0.20 -6.99 9.29 22.36 0.21 -6.79 16 9 C -0.12 -4.22 10.03 22.40 0.22 -3.99 16 10 C -0.19 -8.00 9.99 22.28 0.22 -7.77 16 11 C -0.01 -0.49 5.65 22.83 0.13 -0.36 16 12 F -0.16 -8.77 12.91 44.97 0.58 -8.19 16 13 C -0.02 -1.08 4.69 -21.12 -0.10 -1.18 16 14 C -0.48 -27.59 8.42 23.35 0.20 -27.40 16 15 H 0.06 3.74 7.57 -2.91 -0.02 3.71 16 16 C 0.06 3.43 4.98 85.24 0.42 3.86 16 17 N -0.86 -51.09 13.93 21.83 0.30 -50.79 16 18 Si 0.94 48.08 24.72 68.60 1.70 49.77 16 19 H -0.27 -13.69 6.29 99.48 0.63 -13.06 16 20 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 21 H -0.26 -13.43 7.11 99.48 0.71 -12.72 16 22 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 23 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.04 1.23 7.18 -2.39 -0.02 1.22 16 25 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.09 2.43 9.07 73.35 0.67 3.10 16 29 H 0.05 1.30 7.93 -2.39 -0.02 1.29 16 30 H 0.09 1.87 7.95 -2.38 -0.02 1.85 16 31 H 0.40 16.42 5.48 -92.71 -0.51 15.91 16 32 H 0.14 3.82 6.70 -2.91 -0.02 3.81 16 33 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 34 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 35 H 0.28 15.47 8.30 -92.71 -0.77 14.70 16 Total: -1.00 -65.51 298.83 3.84 -61.67 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 1.19 Total: 20.98 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 3.10 Total: -35.96 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -1.39 Total: -79.32 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 0.58 Total: -8.19 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.70 Total: 49.77 kcal Atomic # 16 Polarization: -7.63 SS G_CDS: -1.33 Total: -8.96 kcal Total: -65.51 3.84 -61.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170309480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.210 kcal (2) G-P(sol) polarization free energy of solvation -65.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds