Wall clock time and date at job start Mon Mar 30 2020 00:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47006 * 2 1 4 4 N 1.46906 * 109.47053 * 240.00213 * 2 1 3 5 5 C 1.46904 * 111.00071 * 84.99749 * 4 2 1 6 6 C 1.52992 * 109.47035 * 180.02562 * 5 4 2 7 7 H 1.09006 * 109.47390 * 60.00149 * 6 5 4 8 8 O 1.42904 * 109.47316 * 300.00162 * 6 5 4 9 9 C 1.50703 * 109.47171 * 179.97438 * 6 5 4 10 10 H 1.07993 * 119.99925 * 0.02562 * 9 6 5 11 11 C 1.37874 * 119.99927 * 179.97438 * 9 6 5 12 12 N 1.31516 * 119.99723 * 180.02562 * 11 9 6 13 13 Si 1.86805 * 120.00323 * 0.02562 * 11 9 6 14 14 H 1.48491 * 109.47185 * 89.99460 * 13 11 9 15 15 H 1.48499 * 109.47141 * 210.00110 * 13 11 9 16 16 H 1.48502 * 109.46883 * 329.99617 * 13 11 9 17 17 C 1.50699 * 109.47389 * 120.00069 * 2 1 3 18 18 C 1.38232 * 120.00701 * 99.72518 * 17 2 1 19 19 C 1.38225 * 120.01341 * 179.74866 * 18 17 2 20 20 C 1.38257 * 120.02152 * 0.55148 * 19 18 17 21 21 C 1.38190 * 120.01858 * 359.69832 * 20 19 18 22 22 C 1.38329 * 120.00448 * 280.00027 * 17 2 1 23 23 Cl 1.73607 * 120.01507 * 359.97438 * 22 17 2 24 24 H 1.09001 * 109.47142 * 59.99947 * 1 2 3 25 25 H 1.09004 * 109.47006 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47097 * 299.99982 * 1 2 3 27 27 H 1.00897 * 110.99665 * 208.95235 * 4 2 1 28 28 H 1.08999 * 109.46647 * 300.00163 * 5 4 2 29 29 H 1.08996 * 109.46868 * 59.99743 * 5 4 2 30 30 H 0.96697 * 113.99705 * 299.99866 * 8 6 5 31 31 H 0.97001 * 119.99762 * 180.02562 * 12 11 9 32 32 H 1.08007 * 119.99379 * 359.97438 * 18 17 2 33 33 H 1.07995 * 119.98795 * 180.25263 * 19 18 17 34 34 H 1.08009 * 119.99059 * 179.72764 * 20 19 18 35 35 H 1.08002 * 120.01232 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3470 6 6 2.5950 -0.5331 -3.5745 7 1 1.9182 -1.3565 -3.8031 8 8 3.8999 -1.0497 -3.3054 9 6 2.6587 0.4055 -4.7518 10 1 2.3636 1.4379 -4.6360 11 6 3.0948 -0.0535 -5.9766 12 7 3.1509 0.7658 -7.0039 13 14 3.6059 -1.8391 -6.1769 14 1 2.4264 -2.6503 -6.5714 15 1 4.6502 -1.9401 -7.2279 16 1 4.1477 -2.3461 -4.8906 17 6 2.0324 -0.7104 1.2304 18 6 2.4535 -2.0243 1.1465 19 6 2.9192 -2.6744 2.2740 20 6 2.9534 -2.0146 3.4884 21 6 2.5279 -0.7026 3.5746 22 6 2.0669 -0.0495 2.4451 23 17 1.5321 1.5986 2.5526 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6163 -2.5525 29 1 2.7587 1.0462 -2.1183 30 1 4.5555 -0.3712 -3.0937 31 1 3.4574 0.4427 -7.8657 32 1 2.4221 -2.5420 0.1991 33 1 3.2519 -3.6997 2.2071 34 1 3.3133 -2.5244 4.3700 35 1 2.5551 -0.1871 4.5233 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309453968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:59 Heat of formation + Delta-G solvation = -33.556513 kcal Electronic energy + Delta-G solvation = -18186.502761 eV Core-core repulsion = 15210.075459 eV Total energy + Delta-G solvation = -2976.427302 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.78630 -37.13237 -36.53262 -35.35083 -32.24665 -31.56855 -30.88297 -29.18007 -27.90027 -24.63637 -23.32973 -22.48751 -20.46231 -20.30050 -17.49401 -17.16480 -15.95958 -15.72850 -15.04153 -14.83726 -14.50979 -14.04227 -13.94147 -13.79859 -13.73296 -12.89386 -12.77157 -12.24960 -12.06669 -11.90127 -11.68111 -11.55674 -11.45655 -11.38719 -11.00030 -10.78670 -10.56087 -10.30555 -9.95985 -9.04453 -9.01299 -8.78823 -8.62489 -8.30224 -8.00545 -6.12291 -4.23763 1.01676 1.14214 2.03425 3.41010 3.49845 3.49886 3.75978 4.37771 4.54719 4.58028 4.76581 4.87257 5.15390 5.21668 5.25767 5.39251 5.51001 5.58336 5.79529 5.86057 5.91581 6.01598 6.05952 6.13801 6.17692 6.28285 6.32774 6.41888 6.67760 6.70233 7.25344 7.46508 7.62099 7.85446 8.28624 8.82786 9.00744 9.52400 10.98351 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.004599 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.234259 B = 6086.485344 C = 6715.379597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.118 3.882 3 H 0.057 0.943 4 N -0.684 5.684 5 C 0.045 3.955 6 C 0.197 3.803 7 H 0.063 0.937 8 O -0.582 6.582 9 C -0.565 4.565 10 H 0.071 0.929 11 C 0.083 3.917 12 N -0.894 5.894 13 Si 0.874 3.126 14 H -0.287 1.287 15 H -0.297 1.297 16 H -0.217 1.217 17 C -0.071 4.071 18 C -0.095 4.095 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.034 4.034 23 Cl -0.071 7.071 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.344 0.656 28 H 0.072 0.928 29 H 0.025 0.975 30 H 0.352 0.648 31 H 0.265 0.735 32 H 0.146 0.854 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 -4.056 21.639 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.008 3.992 3 H 0.075 0.925 4 N -0.317 5.317 5 C -0.084 4.084 6 C 0.139 3.861 7 H 0.081 0.919 8 O -0.388 6.388 9 C -0.603 4.603 10 H 0.089 0.911 11 C -0.121 4.121 12 N -0.531 5.531 13 Si 0.700 3.300 14 H -0.214 1.214 15 H -0.224 1.224 16 H -0.140 1.140 17 C -0.072 4.072 18 C -0.114 4.114 19 C -0.133 4.133 20 C -0.135 4.135 21 C -0.132 4.132 22 C -0.061 4.061 23 Cl -0.042 7.042 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.164 0.836 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.198 0.802 31 H 0.074 0.926 32 H 0.164 0.836 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.431 -4.692 21.183 21.832 hybrid contribution 1.138 0.569 0.015 1.272 sum -1.293 -4.123 21.198 21.634 Atomic orbital electron populations 1.21742 0.93367 1.02411 1.01553 1.20479 0.96343 0.95571 0.86818 0.92537 1.60703 1.33863 1.33620 1.03525 1.22671 1.00925 0.93679 0.91140 1.19817 0.81552 0.94138 0.90571 0.91890 1.86692 1.21562 1.38416 1.92102 1.21496 1.47098 0.98070 0.93606 0.91099 1.25000 0.93364 0.98468 0.95270 1.69964 1.45820 1.36000 1.01289 0.86983 0.78422 0.85001 0.79564 1.21375 1.22395 1.13955 1.19986 0.98619 0.94737 0.93869 1.21220 0.97041 0.93342 0.99771 1.21303 0.99024 1.00346 0.92598 1.21092 1.00120 0.94041 0.98202 1.20989 0.99794 0.95155 0.97293 1.20817 1.03601 0.86581 0.95087 1.98364 1.88730 1.18722 1.98342 0.91884 0.92024 0.92714 0.83582 0.90988 0.95724 0.80162 0.92594 0.83644 0.85384 0.85383 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.35 37.16 0.35 -1.46 16 2 C 0.12 1.69 2.28 -68.86 -0.16 1.54 16 3 H 0.06 0.86 7.01 -51.93 -0.36 0.50 16 4 N -0.68 -11.20 5.61 -107.95 -0.61 -11.81 16 5 C 0.04 0.86 5.13 -3.83 -0.02 0.84 16 6 C 0.20 4.51 2.58 -27.89 -0.07 4.44 16 7 H 0.06 1.53 7.57 -51.93 -0.39 1.13 16 8 O -0.58 -12.71 9.48 -35.23 -0.33 -13.05 16 9 C -0.56 -15.60 9.34 -34.44 -0.32 -15.92 16 10 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 11 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 12 N -0.89 -27.30 13.96 55.43 0.77 -26.53 16 13 Si 0.87 21.82 26.99 -169.99 -4.59 17.23 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 16 H -0.22 -5.27 5.30 56.52 0.30 -4.97 16 17 C -0.07 -0.92 4.99 -104.59 -0.52 -1.44 16 18 C -0.10 -1.14 8.87 -39.59 -0.35 -1.50 16 19 C -0.11 -1.14 10.05 -39.58 -0.40 -1.53 16 20 C -0.12 -1.06 10.04 -39.59 -0.40 -1.46 16 21 C -0.11 -1.15 9.83 -39.55 -0.39 -1.54 16 22 C -0.03 -0.41 6.31 -39.50 -0.25 -0.66 16 23 Cl -0.07 -0.83 26.63 -51.86 -1.38 -2.21 16 24 H 0.06 0.89 7.45 -51.93 -0.39 0.51 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.68 7.26 -51.93 -0.38 0.30 16 27 H 0.34 5.54 6.38 -39.29 -0.25 5.29 16 28 H 0.07 1.42 7.44 -51.93 -0.39 1.04 16 29 H 0.02 0.48 8.05 -51.93 -0.42 0.06 16 30 H 0.35 6.87 9.04 45.56 0.41 7.28 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.15 1.80 6.72 -52.48 -0.35 1.45 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 301.97 15.07 4.55 4.55 Total: -1.00 -30.40 301.97 -8.08 -38.47 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -3.86 Total: 9.72 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.63 Total: -16.38 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.17 Total: -38.33 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.33 Total: -13.05 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.59 Total: 17.23 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.38 Total: -2.21 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.40 -8.08 -38.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309453968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.915 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds