Wall clock time and date at job start Mon Mar 30 2020 00:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47006 * 2 1 4 4 N 1.46906 * 109.47053 * 240.00213 * 2 1 3 5 5 C 1.46904 * 111.00071 * 84.99749 * 4 2 1 6 6 C 1.52992 * 109.47035 * 180.02562 * 5 4 2 7 7 H 1.09006 * 109.47390 * 60.00149 * 6 5 4 8 8 O 1.42904 * 109.47316 * 300.00162 * 6 5 4 9 9 C 1.50703 * 109.47171 * 179.97438 * 6 5 4 10 10 H 1.07993 * 119.99925 * 0.02562 * 9 6 5 11 11 C 1.37874 * 119.99927 * 179.97438 * 9 6 5 12 12 N 1.31516 * 119.99723 * 180.02562 * 11 9 6 13 13 Si 1.86805 * 120.00323 * 0.02562 * 11 9 6 14 14 H 1.48491 * 109.47185 * 89.99460 * 13 11 9 15 15 H 1.48499 * 109.47141 * 210.00110 * 13 11 9 16 16 H 1.48502 * 109.46883 * 329.99617 * 13 11 9 17 17 C 1.50699 * 109.47389 * 120.00069 * 2 1 3 18 18 C 1.38232 * 120.00701 * 99.72518 * 17 2 1 19 19 C 1.38225 * 120.01341 * 179.74866 * 18 17 2 20 20 C 1.38257 * 120.02152 * 0.55148 * 19 18 17 21 21 C 1.38190 * 120.01858 * 359.69832 * 20 19 18 22 22 C 1.38329 * 120.00448 * 280.00027 * 17 2 1 23 23 Cl 1.73607 * 120.01507 * 359.97438 * 22 17 2 24 24 H 1.09001 * 109.47142 * 59.99947 * 1 2 3 25 25 H 1.09004 * 109.47006 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47097 * 299.99982 * 1 2 3 27 27 H 1.00897 * 110.99665 * 208.95235 * 4 2 1 28 28 H 1.08999 * 109.46647 * 300.00163 * 5 4 2 29 29 H 1.08996 * 109.46868 * 59.99743 * 5 4 2 30 30 H 0.96697 * 113.99705 * 299.99866 * 8 6 5 31 31 H 0.97001 * 119.99762 * 180.02562 * 12 11 9 32 32 H 1.08007 * 119.99379 * 359.97438 * 18 17 2 33 33 H 1.07995 * 119.98795 * 180.25263 * 19 18 17 34 34 H 1.08009 * 119.99059 * 179.72764 * 20 19 18 35 35 H 1.08002 * 120.01232 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3470 6 6 2.5950 -0.5331 -3.5745 7 1 1.9182 -1.3565 -3.8031 8 8 3.8999 -1.0497 -3.3054 9 6 2.6587 0.4055 -4.7518 10 1 2.3636 1.4379 -4.6360 11 6 3.0948 -0.0535 -5.9766 12 7 3.1509 0.7658 -7.0039 13 14 3.6059 -1.8391 -6.1769 14 1 2.4264 -2.6503 -6.5714 15 1 4.6502 -1.9401 -7.2279 16 1 4.1477 -2.3461 -4.8906 17 6 2.0324 -0.7104 1.2304 18 6 2.4535 -2.0243 1.1465 19 6 2.9192 -2.6744 2.2740 20 6 2.9534 -2.0146 3.4884 21 6 2.5279 -0.7026 3.5746 22 6 2.0669 -0.0495 2.4451 23 17 1.5321 1.5986 2.5526 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.9173 -1.1204 -1.0288 28 1 1.0870 0.6163 -2.5525 29 1 2.7587 1.0462 -2.1183 30 1 4.5555 -0.3712 -3.0937 31 1 3.4574 0.4427 -7.8657 32 1 2.4221 -2.5420 0.1991 33 1 3.2519 -3.6997 2.2071 34 1 3.3133 -2.5244 4.3700 35 1 2.5551 -0.1871 4.5233 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309453968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:59 Heat of formation + Delta-G solvation = -54.423990 kcal Electronic energy + Delta-G solvation = -18187.407643 eV Core-core repulsion = 15210.075459 eV Total energy + Delta-G solvation = -2977.332184 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69061 -38.67120 -37.40825 -36.77170 -34.42456 -32.83297 -31.69494 -30.35294 -29.54902 -26.31139 -24.34411 -23.48122 -22.20325 -21.36206 -19.33659 -18.33237 -17.11053 -16.86479 -16.69239 -16.28045 -16.02834 -15.36713 -15.16101 -14.97942 -14.69818 -14.66500 -14.11256 -13.60375 -13.41765 -13.25049 -13.00644 -12.84410 -12.55871 -12.51350 -12.38399 -12.32966 -11.96038 -11.84785 -11.45362 -11.08893 -10.81238 -10.19014 -9.84309 -9.63617 -9.36776 -8.34954 -6.50304 0.19627 0.32918 1.17019 1.42749 1.47200 1.77063 2.45298 2.69194 3.02798 3.13933 3.60369 3.94353 4.06430 4.11796 4.25575 4.31107 4.41358 4.44926 4.49945 4.57784 4.72013 4.81397 4.92093 5.02334 5.05940 5.29295 5.29450 5.36156 5.47175 5.51971 5.54088 5.90012 6.07322 6.10991 6.48503 6.64165 7.17231 7.33358 8.79352 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.004599 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.234259 B = 6086.485344 C = 6715.379597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.121 3.879 3 H 0.046 0.954 4 N -0.678 5.678 5 C 0.060 3.940 6 C 0.208 3.792 7 H 0.057 0.943 8 O -0.579 6.579 9 C -0.568 4.568 10 H 0.034 0.966 11 C 0.028 3.972 12 N -0.941 5.941 13 Si 0.943 3.057 14 H -0.286 1.286 15 H -0.299 1.299 16 H -0.202 1.202 17 C -0.089 4.089 18 C -0.108 4.108 19 C -0.113 4.113 20 C -0.108 4.108 21 C -0.115 4.115 22 C -0.047 4.047 23 Cl -0.077 7.077 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.348 0.652 28 H 0.063 0.937 29 H 0.020 0.980 30 H 0.366 0.634 31 H 0.267 0.733 32 H 0.138 0.862 33 H 0.152 0.848 34 H 0.162 0.838 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 -6.111 24.072 24.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.011 3.989 3 H 0.064 0.936 4 N -0.312 5.312 5 C -0.070 4.070 6 C 0.150 3.850 7 H 0.074 0.926 8 O -0.386 6.386 9 C -0.606 4.606 10 H 0.052 0.948 11 C -0.172 4.172 12 N -0.580 5.580 13 Si 0.767 3.233 14 H -0.213 1.213 15 H -0.226 1.226 16 H -0.123 1.123 17 C -0.090 4.090 18 C -0.127 4.127 19 C -0.130 4.130 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.074 4.074 23 Cl -0.048 7.048 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.168 0.832 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.213 0.787 31 H 0.076 0.924 32 H 0.156 0.844 33 H 0.170 0.830 34 H 0.179 0.821 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.731 -6.741 23.643 24.647 hybrid contribution 0.919 1.258 -0.651 1.688 sum -0.812 -5.484 22.993 23.651 Atomic orbital electron populations 1.21702 0.93029 1.02362 1.01552 1.20417 0.96587 0.95049 0.86801 0.93628 1.60626 1.34083 1.32904 1.03565 1.22313 1.00071 0.93476 0.91126 1.19531 0.82144 0.93003 0.90356 0.92556 1.86608 1.21270 1.38706 1.92002 1.21835 1.45986 0.97327 0.95463 0.94777 1.25887 0.93570 1.02715 0.94985 1.70092 1.47726 1.38171 1.02032 0.85933 0.77854 0.79679 0.79868 1.21263 1.22558 1.12341 1.19845 1.00352 0.95361 0.93432 1.21246 0.97938 0.93083 1.00417 1.21607 0.97941 1.01390 0.92109 1.21501 0.98509 0.93526 0.99041 1.21309 0.98908 0.95707 0.97410 1.20960 1.04437 0.86502 0.95493 1.98359 1.88866 1.19221 1.98339 0.92996 0.92025 0.91582 0.83171 0.91818 0.96156 0.78689 0.92443 0.84447 0.82989 0.82083 0.83260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.35 71.98 0.67 -2.78 16 2 C 0.12 3.42 2.28 44.17 0.10 3.52 16 3 H 0.05 1.39 7.01 -2.38 -0.02 1.37 16 4 N -0.68 -21.75 5.61 -495.44 -2.78 -24.52 16 5 C 0.06 2.31 5.13 86.30 0.44 2.75 16 6 C 0.21 9.42 2.58 29.85 0.08 9.50 16 7 H 0.06 2.67 7.57 -2.38 -0.02 2.65 16 8 O -0.58 -24.21 9.48 -148.98 -1.41 -25.62 16 9 C -0.57 -31.89 9.34 25.60 0.24 -31.65 16 10 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 11 C 0.03 1.62 5.47 84.65 0.46 2.09 16 12 N -0.94 -58.71 13.96 21.45 0.30 -58.41 16 13 Si 0.94 45.06 26.99 68.60 1.85 46.91 16 14 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 15 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 16 H -0.20 -9.06 5.30 99.48 0.53 -8.53 16 17 C -0.09 -2.18 4.99 -19.84 -0.10 -2.28 16 18 C -0.11 -2.39 8.87 22.27 0.20 -2.19 16 19 C -0.11 -1.86 10.05 22.27 0.22 -1.64 16 20 C -0.11 -1.55 10.04 22.26 0.22 -1.33 16 21 C -0.11 -1.98 9.83 22.29 0.22 -1.76 16 22 C -0.05 -1.05 6.31 22.32 0.14 -0.91 16 23 Cl -0.08 -1.73 26.63 -2.72 -0.07 -1.80 16 24 H 0.05 1.48 7.45 -2.39 -0.02 1.46 16 25 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.07 1.60 7.26 -2.39 -0.02 1.58 16 27 H 0.35 10.77 6.38 -89.70 -0.57 10.20 16 28 H 0.06 2.56 7.44 -2.39 -0.02 2.55 16 29 H 0.02 0.80 8.05 -2.39 -0.02 0.78 16 30 H 0.37 13.59 9.04 -74.06 -0.67 12.93 16 31 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 32 H 0.14 3.20 6.72 -2.91 -0.02 3.18 16 33 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 34 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 35 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -65.43 301.97 0.48 -64.95 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -0.31 Total: 25.18 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 2.90 Total: -26.69 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -2.48 Total: -82.93 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -1.41 Total: -25.62 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.85 Total: 46.91 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.07 Total: -1.80 kcal Total: -65.43 0.48 -64.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309453968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.528 kcal (2) G-P(sol) polarization free energy of solvation -65.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds