Wall clock time and date at job start Mon Mar 30 2020 00:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47221 * 2 1 4 4 C 1.36943 * 119.99927 * 272.85351 * 3 2 1 5 5 H 1.08000 * 119.99854 * 176.47935 * 4 3 2 6 6 C 1.38811 * 119.99930 * 356.48632 * 4 3 2 7 7 N 1.31618 * 120.00288 * 30.01666 * 6 4 3 8 8 Si 1.86798 * 119.99608 * 210.02396 * 6 4 3 9 9 H 1.48497 * 109.47634 * 84.98722 * 8 6 4 10 10 H 1.48508 * 109.47192 * 204.99210 * 8 6 4 11 11 H 1.48503 * 109.47266 * 324.98475 * 8 6 4 12 12 C 1.46498 * 120.00108 * 92.85340 * 3 2 1 13 13 C 1.50703 * 109.47230 * 270.00194 * 12 3 2 14 14 C 1.38280 * 119.96487 * 89.99588 * 13 12 3 15 15 C 1.38240 * 120.11964 * 180.02562 * 14 13 12 16 16 C 1.38253 * 120.04547 * 0.02562 * 15 14 13 17 17 Cl 1.73603 * 120.04064 * 179.97438 * 16 15 14 18 18 C 1.38819 * 119.92149 * 359.97438 * 16 15 14 19 19 O 1.35929 * 120.05915 * 179.97438 * 18 16 15 20 20 C 1.42893 * 116.99840 * 180.02562 * 19 18 16 21 21 C 1.38160 * 119.95832 * 270.30098 * 13 12 3 22 22 H 1.09002 * 109.47447 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46793 * 300.00058 * 1 2 3 24 24 H 1.08995 * 109.47425 * 59.99685 * 1 2 3 25 25 H 1.09002 * 109.46793 * 239.99941 * 2 1 3 26 26 H 1.08995 * 109.46910 * 120.00421 * 2 1 3 27 27 H 0.97000 * 120.00071 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.47324 * 150.00158 * 12 3 2 29 29 H 1.09002 * 109.46955 * 29.99926 * 12 3 2 30 30 H 1.07997 * 119.93490 * 0.02562 * 14 13 12 31 31 H 1.07997 * 119.97567 * 179.97438 * 15 14 13 32 32 H 1.08998 * 109.47223 * 180.02562 * 20 19 18 33 33 H 1.08999 * 109.47069 * 60.00934 * 20 19 18 34 34 H 1.09002 * 109.47417 * 300.00492 * 20 19 18 35 35 H 1.07997 * 120.02128 * 359.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1910 2.0464 -1.1845 5 1 2.4963 3.0823 -1.1825 6 6 1.9732 1.3893 -2.3877 7 7 1.0902 0.4156 -2.4554 8 14 2.9337 1.8868 -3.9106 9 1 4.2400 1.1807 -3.9247 10 1 2.1605 1.5216 -5.1248 11 1 3.1641 3.3537 -3.8933 12 6 2.3221 2.0508 1.2671 13 6 1.0883 2.7534 1.7724 14 6 0.2052 2.0873 2.6022 15 6 -0.9278 2.7285 3.0671 16 6 -1.1808 4.0380 2.7027 17 17 -2.6040 4.8429 3.2861 18 6 -0.2954 4.7084 1.8698 19 8 -0.5416 5.9957 1.5094 20 6 0.4123 6.6224 0.6497 21 6 0.8377 4.0603 1.4009 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 0.9384 -0.0438 -3.2961 28 1 3.1173 2.7798 1.1114 29 1 2.6452 1.3117 2.0003 30 1 0.4010 1.0642 2.8874 31 1 -1.6162 2.2060 3.7147 32 1 0.0966 7.6445 0.4407 33 1 0.4810 6.0649 -0.2844 34 1 1.3871 6.6361 1.1373 35 1 1.5258 4.5782 0.7492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450339215.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:14 Heat of formation + Delta-G solvation = -3.516778 kcal Electronic energy + Delta-G solvation = -18835.209114 eV Core-core repulsion = 15860.084433 eV Total energy + Delta-G solvation = -2975.124682 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13271 -38.88625 -37.71388 -37.04190 -33.72868 -32.22798 -31.08389 -30.67089 -28.43707 -27.07904 -25.01430 -23.25859 -22.80740 -21.85789 -18.94674 -18.43896 -17.42117 -17.15196 -16.87274 -16.68419 -15.59141 -15.43597 -15.15960 -14.87541 -14.64695 -14.12285 -13.85678 -13.67694 -13.27382 -13.02815 -12.80117 -12.71365 -12.46482 -12.41830 -12.28203 -12.13675 -11.87420 -11.77340 -11.70533 -11.52248 -11.24950 -10.21786 -9.69677 -9.07130 -8.86596 -7.82314 -5.03916 0.26040 0.44908 1.24907 1.48207 1.53764 1.57888 2.31017 2.52756 2.74788 3.25952 3.82757 3.86208 3.95724 4.22157 4.35853 4.37175 4.38619 4.59938 4.68005 4.70856 4.76414 4.90064 5.02735 5.14882 5.17327 5.26952 5.27717 5.38867 5.65723 5.73139 5.80304 5.88527 6.22147 6.32806 6.35743 7.23198 7.94695 8.34071 9.19609 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.021452 B = 0.006215 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.902416 B = 4504.103431 C = 5160.642847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 N -0.600 5.600 4 C -0.253 4.253 5 H 0.075 0.925 6 C -0.044 4.044 7 N -0.907 5.907 8 Si 0.942 3.058 9 H -0.290 1.290 10 H -0.304 1.304 11 H -0.275 1.275 12 C 0.179 3.821 13 C -0.050 4.050 14 C -0.138 4.138 15 C -0.075 4.075 16 C -0.095 4.095 17 Cl -0.068 7.068 18 C 0.122 3.878 19 O -0.324 6.324 20 C 0.022 3.978 21 C -0.191 4.191 22 H 0.027 0.973 23 H 0.033 0.967 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.032 0.968 27 H 0.245 0.755 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.140 0.860 31 H 0.156 0.844 32 H 0.126 0.874 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.351 6.787 10.768 12.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.040 3.960 3 N -0.320 5.320 4 C -0.382 4.382 5 H 0.093 0.907 6 C -0.240 4.240 7 N -0.554 5.554 8 Si 0.772 3.228 9 H -0.218 1.218 10 H -0.231 1.231 11 H -0.200 1.200 12 C 0.053 3.947 13 C -0.054 4.054 14 C -0.157 4.157 15 C -0.094 4.094 16 C -0.122 4.122 17 Cl -0.040 7.040 18 C 0.076 3.924 19 O -0.237 6.237 20 C -0.073 4.073 21 C -0.210 4.210 22 H 0.046 0.954 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.158 0.842 31 H 0.173 0.827 32 H 0.144 0.856 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.639 6.886 10.705 12.833 hybrid contribution 0.187 0.231 -1.371 1.403 sum -1.452 7.117 9.334 11.827 Atomic orbital electron populations 1.22179 0.98994 0.98317 1.00135 1.20908 0.92745 0.84318 0.97980 1.44566 1.75760 1.10759 1.00961 1.19423 1.38526 0.95988 0.84312 0.90681 1.25272 0.99637 0.99535 0.99542 1.70422 1.31578 1.28268 1.25097 0.85640 0.79254 0.77813 0.80045 1.21753 1.23133 1.20041 1.20060 0.91883 0.95522 0.87267 1.21102 0.99415 0.92654 0.92238 1.21021 0.94532 1.00529 0.99639 1.21059 0.97685 0.91340 0.99312 1.20236 0.91971 0.94764 1.05234 1.98312 1.38091 1.80038 1.87529 1.18828 0.93683 0.84855 0.95031 1.86064 1.49849 1.22935 1.64894 1.23296 0.92561 0.98825 0.92588 1.21132 0.98434 0.96867 1.04609 0.95408 0.94803 0.93314 0.92476 0.94957 0.94573 0.91977 0.90669 0.84194 0.82675 0.85618 0.93311 0.91537 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.17 9.68 71.98 0.70 -5.47 16 2 C 0.17 7.52 5.71 86.38 0.49 8.01 16 3 N -0.60 -27.35 2.52 -706.34 -1.78 -29.12 16 4 C -0.25 -12.91 9.68 84.03 0.81 -12.09 16 5 H 0.08 3.74 7.99 -2.91 -0.02 3.72 16 6 C -0.04 -2.36 4.97 84.86 0.42 -1.93 16 7 N -0.91 -50.21 8.37 21.65 0.18 -50.03 16 8 Si 0.94 43.32 29.65 68.60 2.03 45.36 16 9 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 10 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 12 C 0.18 6.51 5.83 85.63 0.50 7.00 16 13 C -0.05 -1.75 5.41 -19.87 -0.11 -1.86 16 14 C -0.14 -4.31 7.67 22.28 0.17 -4.14 16 15 C -0.08 -2.21 9.83 22.27 0.22 -2.00 16 16 C -0.09 -3.03 6.33 22.41 0.14 -2.89 16 17 Cl -0.07 -1.98 28.51 -2.72 -0.08 -2.05 16 18 C 0.12 4.12 6.68 22.52 0.15 4.27 16 19 O -0.32 -10.10 9.96 -92.75 -0.92 -11.03 16 20 C 0.02 0.51 9.81 113.37 1.11 1.63 16 21 C -0.19 -6.61 8.69 22.36 0.19 -6.42 16 22 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.03 1.38 5.69 -2.39 -0.01 1.37 16 24 H 0.05 2.59 6.30 -2.39 -0.02 2.58 16 25 H 0.06 2.98 5.82 -2.39 -0.01 2.97 16 26 H 0.03 1.28 7.86 -2.39 -0.02 1.26 16 27 H 0.24 13.41 8.31 -92.71 -0.77 12.64 16 28 H 0.06 2.18 7.98 -2.39 -0.02 2.16 16 29 H 0.08 2.39 7.82 -2.39 -0.02 2.37 16 30 H 0.14 3.90 7.89 -2.91 -0.02 3.88 16 31 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 32 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 1.27 7.65 -2.39 -0.02 1.25 16 34 H 0.07 1.40 7.67 -2.39 -0.02 1.39 16 35 H 0.13 4.43 6.30 -2.91 -0.02 4.41 16 Total: -1.00 -58.90 302.24 5.33 -53.57 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.09 Total: 9.19 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 4.81 Total: -15.88 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.60 Total: -79.16 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.92 Total: -11.03 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.08 Total: -2.05 kcal Total: -58.90 5.33 -53.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450339215.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.049 kcal (2) G-P(sol) polarization free energy of solvation -58.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds