Wall clock time and date at job start Mon Mar 30 2020 00:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35929 * 116.99943 * 2 1 4 4 C 1.38705 * 120.05850 * 0.02562 * 3 2 1 5 5 C 1.38151 * 119.95791 * 179.97438 * 4 3 2 6 6 C 1.38278 * 120.07611 * 0.02562 * 5 4 3 7 7 C 1.38248 * 120.11951 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.97578 * 179.97438 * 7 6 5 9 9 N 1.46897 * 109.46908 * 259.99427 * 8 7 6 10 10 C 1.46906 * 111.00172 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.46389 * 324.99645 * 10 9 8 12 12 C 1.52997 * 109.47302 * 84.99810 * 10 9 8 13 13 C 1.50697 * 109.47180 * 205.00376 * 10 9 8 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99815 * 179.97438 * 13 10 9 16 16 N 1.31508 * 119.99915 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99777 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47152 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47204 * 119.99883 * 17 15 13 20 20 H 1.48496 * 109.47191 * 240.00215 * 17 15 13 21 21 C 1.38253 * 120.04004 * 0.24983 * 7 6 5 22 22 Cl 1.73604 * 120.03593 * 179.72871 * 21 7 6 23 23 H 1.09005 * 109.47085 * 299.99721 * 1 2 3 24 24 H 1.08995 * 109.47287 * 59.99996 * 1 2 3 25 25 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.02318 * 0.02562 * 4 3 2 27 27 H 1.08006 * 119.96336 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.93921 * 179.97438 * 6 5 4 29 29 H 1.09005 * 109.46789 * 139.99831 * 8 7 6 30 30 H 1.09001 * 109.47726 * 19.99621 * 8 7 6 31 31 H 1.00899 * 111.00259 * 303.95552 * 9 8 7 32 32 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 33 33 H 1.09001 * 109.46832 * 60.00356 * 12 10 9 34 34 H 1.09004 * 109.47261 * 300.00337 * 12 10 9 35 35 H 0.97001 * 119.99839 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3752 0.0005 5 6 1.9211 3.6050 0.0011 6 6 3.3020 3.6768 0.0005 7 6 4.0569 2.5186 -0.0011 8 6 5.5617 2.6006 -0.0022 9 7 6.0625 2.3882 -1.3667 10 6 7.5293 2.4607 -1.4065 11 1 7.8757 3.2048 -0.6893 12 6 8.1174 1.0945 -1.0482 13 6 7.9755 2.8523 -2.7916 14 1 7.2429 3.0291 -3.5651 15 6 9.3191 2.9847 -3.0712 16 7 10.2112 2.7699 -2.1291 17 14 9.8723 3.4694 -4.7884 18 1 8.6829 3.6516 -5.6587 19 1 10.6369 4.7406 -4.7218 20 1 10.7368 2.4006 -5.3501 21 6 3.4322 1.2853 -0.0074 22 17 4.3803 -0.1690 -0.0165 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2132 2.3202 0.0014 27 1 1.3339 4.5115 0.0011 28 1 3.7918 4.6394 0.0005 29 1 5.9678 1.8338 0.6574 30 1 5.8723 3.5844 0.3498 31 1 5.7340 1.5102 -1.7399 32 1 9.2057 1.1484 -1.0773 33 1 7.7709 0.3504 -1.7655 34 1 7.7946 0.8113 -0.0463 35 1 11.1564 2.8634 -2.3258 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602872020.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:26 Heat of formation + Delta-G solvation = -20.220422 kcal Electronic energy + Delta-G solvation = -18135.681485 eV Core-core repulsion = 15159.832479 eV Total energy + Delta-G solvation = -2975.849006 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.21447 -37.90990 -36.14100 -35.75860 -32.83520 -31.00878 -30.31694 -28.06731 -27.32610 -25.13615 -24.31421 -22.51031 -21.02332 -20.12380 -17.97160 -16.49926 -16.25669 -16.18885 -15.91485 -14.77944 -14.49155 -14.37661 -13.90854 -13.78358 -13.10221 -12.89588 -12.63407 -12.05106 -11.85357 -11.63935 -11.49327 -11.32376 -11.14732 -11.07654 -10.89725 -10.73256 -10.50612 -10.39672 -10.07185 -9.84336 -8.96129 -8.63735 -8.32041 -8.15947 -7.19648 -5.94049 -3.96885 1.19787 1.37852 2.39756 3.11182 3.34962 3.42490 3.48293 3.66168 4.48677 4.69117 4.77206 4.95232 4.97591 5.14974 5.26406 5.31428 5.37129 5.37830 5.63118 5.73426 5.95816 6.07429 6.25500 6.35985 6.64523 6.66738 6.76932 6.92917 7.15899 7.21227 7.39761 7.79803 7.93046 8.30938 8.56938 8.65046 9.10575 9.68181 11.13047 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.029570 B = 0.004579 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.691640 B = 6113.390749 C = 6450.968145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.307 6.307 3 C 0.132 3.868 4 C -0.209 4.209 5 C -0.078 4.078 6 C -0.129 4.129 7 C -0.019 4.019 8 C 0.090 3.910 9 N -0.675 5.675 10 C 0.211 3.789 11 H 0.034 0.966 12 C -0.167 4.167 13 C -0.492 4.492 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.286 1.286 21 C -0.067 4.067 22 Cl -0.054 7.054 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.099 0.901 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.329 0.671 32 H 0.088 0.912 33 H 0.027 0.973 34 H 0.006 0.994 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.663 -2.357 6.666 19.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.086 3.914 4 C -0.228 4.228 5 C -0.096 4.096 6 C -0.148 4.148 7 C -0.020 4.020 8 C -0.039 4.039 9 N -0.305 5.305 10 C 0.104 3.896 11 H 0.052 0.948 12 C -0.227 4.227 13 C -0.531 4.531 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.095 4.095 22 Cl -0.025 7.025 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.149 0.851 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.146 0.854 32 H 0.107 0.893 33 H 0.046 0.954 34 H 0.025 0.975 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.368 -2.018 6.497 19.587 hybrid contribution 0.415 -0.635 -0.481 0.898 sum -17.953 -2.653 6.016 19.119 Atomic orbital electron populations 1.23057 0.78477 1.03927 1.01273 1.86157 1.21185 1.26154 1.88560 1.18628 0.90405 0.84998 0.97376 1.21087 0.99785 0.91828 1.10080 1.20993 0.94639 0.96968 0.97041 1.20986 0.93235 0.98087 1.02464 1.19859 0.97310 0.90219 0.94610 1.20966 0.87523 1.01728 0.93716 1.60966 1.13797 1.39668 1.16102 1.19206 0.80148 0.92861 0.97428 0.94765 1.22408 1.05499 0.99080 0.95686 1.21190 0.91376 1.44738 0.95811 0.91887 1.24941 0.96696 0.95754 0.97139 1.69897 1.01067 1.50430 1.32364 0.86461 0.78543 0.77924 0.84592 1.19743 1.21177 1.21254 1.20124 0.88566 0.88828 1.11953 1.98367 1.71563 1.35621 1.96954 0.92706 0.92600 0.88236 0.85093 0.85385 0.84750 0.94288 0.90248 0.85404 0.89323 0.95386 0.97507 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.97 9.96 -19.52 -0.19 -4.16 16 3 C 0.13 1.85 6.68 -39.20 -0.26 1.58 16 4 C -0.21 -2.41 9.04 -39.44 -0.36 -2.77 16 5 C -0.08 -0.90 10.04 -39.60 -0.40 -1.30 16 6 C -0.13 -1.78 9.66 -39.56 -0.38 -2.16 16 7 C -0.02 -0.30 5.39 -104.61 -0.56 -0.87 16 8 C 0.09 1.67 5.05 -4.98 -0.03 1.64 16 9 N -0.68 -14.84 6.22 -109.22 -0.68 -15.52 16 10 C 0.21 5.39 2.57 -68.86 -0.18 5.21 16 11 H 0.03 0.94 7.80 -51.93 -0.40 0.54 16 12 C -0.17 -4.14 8.94 37.16 0.33 -3.81 16 13 C -0.49 -13.83 8.84 -34.44 -0.30 -14.13 16 14 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 15 C 0.05 1.54 5.30 -17.82 -0.09 1.45 16 16 N -0.90 -25.91 11.32 55.43 0.63 -25.28 16 17 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 C -0.07 -1.07 6.31 -39.36 -0.25 -1.32 16 22 Cl -0.05 -0.90 26.29 -51.86 -1.36 -2.26 16 23 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 24 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.13 1.12 6.30 -52.49 -0.33 0.79 16 27 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 28 H 0.13 1.70 8.03 -52.48 -0.42 1.28 16 29 H 0.04 0.74 6.66 -51.93 -0.35 0.39 16 30 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 31 H 0.33 7.19 7.63 -39.29 -0.30 6.89 16 32 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 33 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 305.93 15.07 4.61 4.61 Total: -1.00 -30.30 305.93 -8.03 -38.33 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.52 Total: 2.81 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -1.49 Total: -15.26 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: -0.05 Total: -40.80 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.19 Total: -4.16 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.36 Total: -2.26 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.30 -8.03 -38.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602872020.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.110 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds