Wall clock time and date at job start Mon Mar 30 2020 00:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35929 * 116.99943 * 2 1 4 4 C 1.38705 * 120.05850 * 0.02562 * 3 2 1 5 5 C 1.38151 * 119.95791 * 179.97438 * 4 3 2 6 6 C 1.38278 * 120.07611 * 0.02562 * 5 4 3 7 7 C 1.38248 * 120.11951 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.97578 * 179.97438 * 7 6 5 9 9 N 1.46897 * 109.46908 * 259.99427 * 8 7 6 10 10 C 1.46906 * 111.00172 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.46389 * 324.99645 * 10 9 8 12 12 C 1.52997 * 109.47302 * 84.99810 * 10 9 8 13 13 C 1.50697 * 109.47180 * 205.00376 * 10 9 8 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99815 * 179.97438 * 13 10 9 16 16 N 1.31508 * 119.99915 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99777 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47152 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47204 * 119.99883 * 17 15 13 20 20 H 1.48496 * 109.47191 * 240.00215 * 17 15 13 21 21 C 1.38253 * 120.04004 * 0.24983 * 7 6 5 22 22 Cl 1.73604 * 120.03593 * 179.72871 * 21 7 6 23 23 H 1.09005 * 109.47085 * 299.99721 * 1 2 3 24 24 H 1.08995 * 109.47287 * 59.99996 * 1 2 3 25 25 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.02318 * 0.02562 * 4 3 2 27 27 H 1.08006 * 119.96336 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.93921 * 179.97438 * 6 5 4 29 29 H 1.09005 * 109.46789 * 139.99831 * 8 7 6 30 30 H 1.09001 * 109.47726 * 19.99621 * 8 7 6 31 31 H 1.00899 * 111.00259 * 303.95552 * 9 8 7 32 32 H 1.09002 * 109.47153 * 180.02562 * 12 10 9 33 33 H 1.09001 * 109.46832 * 60.00356 * 12 10 9 34 34 H 1.09004 * 109.47261 * 300.00337 * 12 10 9 35 35 H 0.97001 * 119.99839 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3752 0.0005 5 6 1.9211 3.6050 0.0011 6 6 3.3020 3.6768 0.0005 7 6 4.0569 2.5186 -0.0011 8 6 5.5617 2.6006 -0.0022 9 7 6.0625 2.3882 -1.3667 10 6 7.5293 2.4607 -1.4065 11 1 7.8757 3.2048 -0.6893 12 6 8.1174 1.0945 -1.0482 13 6 7.9755 2.8523 -2.7916 14 1 7.2429 3.0291 -3.5651 15 6 9.3191 2.9847 -3.0712 16 7 10.2112 2.7699 -2.1291 17 14 9.8723 3.4694 -4.7884 18 1 8.6829 3.6516 -5.6587 19 1 10.6369 4.7406 -4.7218 20 1 10.7368 2.4006 -5.3501 21 6 3.4322 1.2853 -0.0074 22 17 4.3803 -0.1690 -0.0165 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2132 2.3202 0.0014 27 1 1.3339 4.5115 0.0011 28 1 3.7918 4.6394 0.0005 29 1 5.9678 1.8338 0.6574 30 1 5.8723 3.5844 0.3498 31 1 5.7340 1.5102 -1.7399 32 1 9.2057 1.1484 -1.0773 33 1 7.7709 0.3504 -1.7655 34 1 7.7946 0.8113 -0.0463 35 1 11.1564 2.8634 -2.3258 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602872020.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:26 Heat of formation + Delta-G solvation = -39.344396 kcal Electronic energy + Delta-G solvation = -18136.510763 eV Core-core repulsion = 15159.832479 eV Total energy + Delta-G solvation = -2976.678284 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.19299 -39.01398 -37.46511 -37.31809 -34.68253 -32.52248 -31.31657 -29.68487 -28.11279 -27.24691 -25.79525 -23.53841 -22.21515 -22.04363 -19.06312 -18.20076 -17.48778 -17.26011 -16.81838 -16.68529 -16.06327 -15.54490 -15.27682 -14.95718 -14.45704 -14.27795 -14.11599 -13.57615 -13.21909 -13.01067 -12.90308 -12.78221 -12.63468 -12.50353 -12.33395 -12.17292 -12.06080 -12.01195 -11.86217 -11.56734 -11.02343 -10.47807 -9.76726 -9.17748 -8.98074 -8.08263 -6.19336 0.14533 0.35111 1.24441 1.43180 1.44657 1.57445 2.27717 2.45230 2.63055 3.20067 3.63631 3.89112 3.91559 4.07444 4.26108 4.34462 4.41863 4.43623 4.57554 4.67988 4.74214 4.76622 4.85563 4.90346 5.09414 5.12109 5.35289 5.39419 5.54434 5.68663 5.69277 5.81074 6.26318 6.34115 6.62086 6.75554 6.93888 7.50241 8.97635 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.029570 B = 0.004579 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.691640 B = 6113.390749 C = 6450.968145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.126 3.874 4 C -0.197 4.197 5 C -0.066 4.066 6 C -0.139 4.139 7 C -0.041 4.041 8 C 0.096 3.904 9 N -0.676 5.676 10 C 0.216 3.784 11 H 0.008 0.992 12 C -0.152 4.152 13 C -0.514 4.514 14 H 0.054 0.946 15 C 0.010 3.990 16 N -0.922 5.922 17 Si 0.962 3.038 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.281 1.281 21 C -0.090 4.090 22 Cl -0.074 7.074 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.116 0.884 26 H 0.169 0.831 27 H 0.167 0.833 28 H 0.142 0.858 29 H 0.030 0.970 30 H 0.077 0.923 31 H 0.329 0.671 32 H 0.063 0.937 33 H 0.026 0.974 34 H 0.021 0.979 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.149 -1.629 6.254 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.080 3.920 4 C -0.216 4.216 5 C -0.084 4.084 6 C -0.158 4.158 7 C -0.042 4.042 8 C -0.033 4.033 9 N -0.306 5.306 10 C 0.108 3.892 11 H 0.026 0.974 12 C -0.211 4.211 13 C -0.552 4.552 14 H 0.072 0.928 15 C -0.189 4.189 16 N -0.563 5.563 17 Si 0.787 3.213 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.207 1.207 21 C -0.118 4.118 22 Cl -0.045 7.045 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.135 0.865 26 H 0.186 0.814 27 H 0.185 0.815 28 H 0.159 0.841 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.146 0.854 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.880 -1.294 6.095 21.790 hybrid contribution 1.038 -0.864 -0.294 1.382 sum -19.842 -2.158 5.801 20.785 Atomic orbital electron populations 1.23416 0.75892 1.05718 1.02714 1.86139 1.23884 1.25908 1.88343 1.18789 0.89855 0.86350 0.97053 1.21539 1.01517 0.90757 1.07758 1.21414 0.93710 0.98567 0.94705 1.21190 0.94555 0.97464 1.02552 1.19656 0.95666 0.91492 0.97390 1.20874 0.89763 1.01180 0.91488 1.60831 1.11512 1.39593 1.18632 1.18975 0.82372 0.92220 0.95673 0.97395 1.22200 1.03618 0.98800 0.96523 1.21444 0.91683 1.45402 0.96689 0.92815 1.25709 0.96701 0.95556 1.00885 1.70016 1.01341 1.50759 1.34146 0.85451 0.78058 0.77729 0.80025 1.19372 1.20525 1.20709 1.20299 0.89652 0.87974 1.13857 1.98347 1.72275 1.36754 1.97162 0.90941 0.91275 0.86546 0.81401 0.81520 0.84067 0.95166 0.90414 0.85423 0.91790 0.95516 0.95978 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.89 9.96 -92.75 -0.92 -8.82 16 3 C 0.13 3.29 6.68 22.52 0.15 3.44 16 4 C -0.20 -3.82 9.04 22.36 0.20 -3.62 16 5 C -0.07 -1.28 10.04 22.26 0.22 -1.06 16 6 C -0.14 -3.61 9.66 22.28 0.22 -3.39 16 7 C -0.04 -1.31 5.39 -19.86 -0.11 -1.42 16 8 C 0.10 3.65 5.05 85.56 0.43 4.08 16 9 N -0.68 -30.42 6.22 -499.47 -3.11 -33.53 16 10 C 0.22 11.35 2.57 44.17 0.11 11.47 16 11 H 0.01 0.46 7.80 -2.39 -0.02 0.44 16 12 C -0.15 -7.72 8.94 71.98 0.64 -7.08 16 13 C -0.51 -29.36 8.84 25.60 0.23 -29.13 16 14 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 15 C 0.01 0.54 5.30 84.66 0.45 0.99 16 16 N -0.92 -54.03 11.32 21.45 0.24 -53.78 16 17 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 C -0.09 -2.86 6.31 22.41 0.14 -2.72 16 22 Cl -0.07 -2.51 26.29 -2.72 -0.07 -2.59 16 23 H 0.07 0.67 7.66 -2.38 -0.02 0.65 16 24 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 25 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.17 1.96 6.30 -2.91 -0.02 1.95 16 27 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 28 H 0.14 3.38 8.03 -2.91 -0.02 3.36 16 29 H 0.03 1.19 6.66 -2.38 -0.02 1.17 16 30 H 0.08 2.90 7.92 -2.39 -0.02 2.89 16 31 H 0.33 14.73 7.63 -89.69 -0.68 14.05 16 32 H 0.06 3.57 6.07 -2.39 -0.01 3.56 16 33 H 0.03 1.31 8.13 -2.39 -0.02 1.29 16 34 H 0.02 1.00 7.45 -2.38 -0.02 0.98 16 35 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -66.30 305.93 2.39 -63.91 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.42 Total: 15.10 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 3.80 Total: -27.12 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -2.86 Total: -87.31 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.92 Total: -8.82 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.07 Total: -2.59 kcal Total: -66.30 2.39 -63.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602872020.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.567 kcal (2) G-P(sol) polarization free energy of solvation -66.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds