Wall clock time and date at job start Mon Mar 30 2020 00:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47603 * 2 1 4 4 C 1.53004 * 109.46980 * 120.00093 * 2 1 3 5 5 N 1.46505 * 109.46844 * 174.99799 * 4 2 1 6 6 C 1.46498 * 119.99999 * 269.99686 * 5 4 2 7 7 C 1.34776 * 119.99689 * 90.00551 * 5 4 2 8 8 O 1.21634 * 120.00037 * 356.42955 * 7 5 4 9 9 C 1.47270 * 119.99811 * 176.43516 * 7 5 4 10 10 C 1.35201 * 123.14063 * 186.40119 * 9 7 5 11 11 S 1.70943 * 108.82828 * 179.97438 * 10 9 7 12 12 C 1.70770 * 91.12669 * 0.02562 * 11 10 9 13 13 N 1.28652 * 110.55975 * 359.75878 * 12 11 10 14 14 N 1.46499 * 109.47346 * 239.99827 * 2 1 3 15 15 C 1.36934 * 119.99800 * 84.99927 * 14 2 1 16 16 H 1.08005 * 120.00380 * 0.02562 * 15 14 2 17 17 C 1.38819 * 120.00181 * 180.02562 * 15 14 2 18 18 N 1.31619 * 119.99804 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99730 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47148 * 90.00311 * 19 17 15 21 21 H 1.48496 * 109.46988 * 210.00167 * 19 17 15 22 22 H 1.48493 * 109.47314 * 330.00417 * 19 17 15 23 23 H 1.09005 * 109.47245 * 299.99933 * 1 2 3 24 24 H 1.09000 * 109.47143 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46963 * 59.99899 * 1 2 3 26 26 H 1.08996 * 109.47281 * 294.99621 * 4 2 1 27 27 H 1.08998 * 109.47117 * 54.99801 * 4 2 1 28 28 H 1.08996 * 109.46910 * 95.91969 * 6 5 4 29 29 H 1.08998 * 109.47139 * 215.91357 * 6 5 4 30 30 H 1.08994 * 109.47324 * 335.92095 * 6 5 4 31 31 H 1.08007 * 125.58919 * 359.96725 * 10 9 7 32 32 H 1.08004 * 124.71890 * 179.97438 * 12 11 10 33 33 H 0.96994 * 120.00254 * 265.00583 * 14 2 1 34 34 H 0.97002 * 119.99530 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8265 1.1905 6 6 4.1258 -1.9920 0.5612 7 6 4.2675 0.1491 1.7157 8 8 3.7496 1.1469 2.1800 9 6 5.7333 0.0070 1.7271 10 6 6.5560 0.8827 2.3469 11 16 8.1721 0.3690 2.1312 12 6 7.6566 -0.9841 1.2258 13 7 6.3738 -1.0015 1.1301 14 7 2.0184 -0.6906 -1.1961 15 6 2.1491 -0.0075 -2.3757 16 1 1.8926 1.0405 -2.4241 17 6 2.6114 -0.6620 -3.5093 18 7 2.7376 -0.0052 -4.6429 19 14 3.0557 -2.4744 -3.4253 20 1 1.8584 -3.2929 -3.7442 21 1 4.1307 -2.7665 -4.4073 22 1 3.5312 -2.8047 -2.0579 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 1.7517 -0.1584 2.1370 27 1 1.6053 -1.7198 1.2952 28 1 4.3755 -1.7561 -0.4732 29 1 5.0343 -2.2538 1.1036 30 1 3.4332 -2.8333 0.5849 31 1 6.2434 1.7628 2.8894 32 1 8.3156 -1.7243 0.7966 33 1 2.2490 -1.6317 -1.1526 34 1 3.0609 -0.4625 -5.4349 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676318062.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:45 Heat of formation + Delta-G solvation = 44.599153 kcal Electronic energy + Delta-G solvation = -18872.492843 eV Core-core repulsion = 15933.791082 eV Total energy + Delta-G solvation = -2938.701761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54587 -38.58317 -36.40238 -34.25107 -32.00391 -30.67881 -29.47695 -27.22587 -26.31808 -24.96012 -23.32533 -21.85262 -20.10744 -19.35746 -18.25637 -17.56972 -16.44411 -16.03118 -15.50348 -15.14667 -14.67092 -14.24154 -13.71241 -13.55304 -13.45930 -13.00774 -12.52682 -12.47314 -12.21970 -12.16669 -11.80494 -11.57963 -11.33360 -10.90759 -10.63974 -10.52402 -9.97641 -9.89133 -9.82115 -9.56077 -9.43973 -9.09939 -8.90025 -8.16643 -7.18380 -5.71010 -3.05242 0.46615 1.16053 1.50217 2.03857 3.31951 3.38348 3.40678 3.46786 3.55199 4.09120 4.62933 4.84913 5.07476 5.21545 5.30254 5.53353 5.56844 5.62969 5.66255 5.77910 6.03088 6.18667 6.26824 6.27197 6.47789 6.53908 6.81793 6.85269 7.11177 7.33670 7.69146 8.06249 8.40971 8.47654 9.26704 9.98898 10.19566 11.47793 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.018477 B = 0.006767 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.064528 B = 4136.764239 C = 4973.288274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.160 3.840 3 H 0.060 0.940 4 C 0.107 3.893 5 N -0.579 5.579 6 C 0.071 3.929 7 C 0.590 3.410 8 O -0.543 6.543 9 C 0.017 3.983 10 C -0.224 4.224 11 S 0.195 5.805 12 C -0.005 4.005 13 N -0.430 5.430 14 N -0.743 5.743 15 C -0.233 4.233 16 H 0.088 0.912 17 C 0.001 3.999 18 N -0.937 5.937 19 Si 0.879 3.121 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.270 1.270 23 H 0.041 0.959 24 H 0.045 0.955 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.189 0.811 32 H 0.204 0.796 33 H 0.359 0.641 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.244 -3.864 16.448 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.050 3.950 3 H 0.078 0.922 4 C -0.016 4.016 5 N -0.308 5.308 6 C -0.072 4.072 7 C 0.375 3.625 8 O -0.421 6.421 9 C -0.117 4.117 10 C -0.366 4.366 11 S 0.450 5.550 12 C -0.304 4.304 13 N -0.144 5.144 14 N -0.387 5.387 15 C -0.363 4.363 16 H 0.106 0.894 17 C -0.194 4.194 18 N -0.585 5.585 19 Si 0.710 3.290 20 H -0.214 1.214 21 H -0.220 1.220 22 H -0.197 1.197 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.206 0.794 32 H 0.221 0.779 33 H 0.192 0.808 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.666 -3.278 16.502 19.920 hybrid contribution -0.622 -1.317 -0.464 1.529 sum 10.043 -4.595 16.038 19.473 Atomic orbital electron populations 1.22337 0.98253 1.00833 1.00802 1.20616 0.92143 0.96577 0.85705 0.92208 1.21992 0.78476 1.01320 0.99804 1.47431 1.06536 1.21246 1.55579 1.22487 0.98635 0.86068 0.99978 1.17018 0.83949 0.83008 0.78533 1.90778 1.73479 1.29042 1.48810 1.20587 0.96496 0.93121 1.01507 1.26570 0.97096 1.06079 1.06819 1.82808 1.05950 1.20011 1.46264 1.28679 0.95050 1.03010 1.03705 1.67351 1.06590 1.22277 1.18223 1.42720 1.79707 1.09230 1.07026 1.19072 1.36277 0.95527 0.85466 0.89433 1.24649 1.01743 0.97392 0.95583 1.69707 1.53167 1.35422 1.00248 0.86661 0.78028 0.87082 0.77214 1.21391 1.21971 1.19654 0.93973 0.93585 0.92077 0.89791 0.90821 0.91172 0.88286 0.92658 0.79427 0.77933 0.80823 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.49 37.16 0.35 -2.57 16 2 C 0.16 3.28 3.20 -67.93 -0.22 3.06 16 3 H 0.06 1.39 8.08 -51.93 -0.42 0.97 16 4 C 0.11 1.85 5.04 -4.04 -0.02 1.83 16 5 N -0.58 -10.45 2.73 -182.91 -0.50 -10.95 16 6 C 0.07 1.21 8.01 59.85 0.48 1.69 16 7 C 0.59 11.03 7.64 -12.59 -0.10 10.93 16 8 O -0.54 -11.20 16.34 5.25 0.09 -11.11 16 9 C 0.02 0.27 6.50 -84.53 -0.55 -0.27 16 10 C -0.22 -2.82 10.62 29.65 0.31 -2.50 16 11 S 0.20 1.70 22.97 -107.50 -2.47 -0.76 16 12 C -0.01 -0.06 12.17 51.43 0.63 0.57 16 13 N -0.43 -6.19 6.73 -12.36 -0.08 -6.27 16 14 N -0.74 -17.83 4.28 -53.42 -0.23 -18.06 16 15 C -0.23 -6.73 10.41 -15.06 -0.16 -6.89 16 16 H 0.09 2.76 8.06 -52.48 -0.42 2.33 16 17 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 18 N -0.94 -30.03 13.97 55.49 0.78 -29.26 16 19 Si 0.88 22.09 27.74 -169.99 -4.71 17.37 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 22 H -0.27 -6.14 5.23 56.52 0.30 -5.84 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.08 1.37 7.47 -51.93 -0.39 0.98 16 27 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 28 H 0.07 1.42 6.60 -51.93 -0.34 1.08 16 29 H 0.10 1.52 5.19 -51.93 -0.27 1.25 16 30 H 0.05 0.84 7.83 -51.93 -0.41 0.44 16 31 H 0.19 2.17 8.04 -52.48 -0.42 1.75 16 32 H 0.20 1.34 8.06 -52.48 -0.42 0.91 16 33 H 0.36 8.31 4.26 -40.82 -0.17 8.14 16 34 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 296.95 15.07 4.48 4.48 Total: -1.00 -34.89 296.95 -6.21 -41.09 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.18 Total: 7.68 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 0.64 Total: 5.79 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -0.04 Total: -64.54 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.47 Total: -0.76 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.89 -6.21 -41.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676318062.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.692 kcal (2) G-P(sol) polarization free energy of solvation -34.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds