Wall clock time and date at job start Mon Mar 30 2020 00:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47224 * 2 1 4 4 C 1.53005 * 109.46936 * 119.99918 * 2 1 3 5 5 N 1.46498 * 109.46824 * 175.00005 * 4 2 1 6 6 C 1.46501 * 119.99922 * 269.99480 * 5 4 2 7 7 C 1.36929 * 120.00106 * 90.00253 * 5 4 2 8 8 H 1.08007 * 119.99972 * 23.63983 * 7 5 4 9 9 C 1.38811 * 120.00001 * 203.64079 * 7 5 4 10 10 N 1.31620 * 120.00052 * 11.27497 * 9 7 5 11 11 Si 1.86808 * 120.00115 * 191.27263 * 9 7 5 12 12 H 1.48498 * 109.46985 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47255 * 120.00184 * 11 9 7 14 14 H 1.48504 * 109.47119 * 240.00340 * 11 9 7 15 15 N 1.46504 * 109.46976 * 239.99866 * 2 1 3 16 16 C 1.34767 * 119.99931 * 84.72864 * 15 2 1 17 17 O 1.21630 * 120.00316 * 0.27104 * 16 15 2 18 18 C 1.47107 * 119.99942 * 180.27479 * 16 15 2 19 19 C 1.38387 * 127.99763 * 179.70524 * 18 16 15 20 20 C 1.37570 * 111.26129 * 179.82470 * 19 18 16 21 21 N 1.29553 * 117.94982 * 0.50459 * 20 19 18 22 22 S 1.56304 * 110.38038 * 359.71093 * 21 20 19 23 23 H 1.09009 * 109.47222 * 60.00180 * 1 2 3 24 24 H 1.09002 * 109.47617 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47086 * 300.00218 * 1 2 3 26 26 H 1.08999 * 109.47270 * 294.99930 * 4 2 1 27 27 H 1.09002 * 109.46747 * 55.00145 * 4 2 1 28 28 H 1.09004 * 109.46834 * 94.58124 * 6 5 4 29 29 H 1.08997 * 109.47550 * 214.58572 * 6 5 4 30 30 H 1.09004 * 109.47288 * 334.58996 * 6 5 4 31 31 H 0.97003 * 119.99770 * 180.02562 * 10 9 7 32 32 H 0.97001 * 119.99645 * 264.99873 * 15 2 1 33 33 H 1.08001 * 124.36771 * 359.97438 * 19 18 16 34 34 H 1.08008 * 121.02823 * 180.19491 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1257 -1.9920 0.5613 7 6 4.2798 0.1647 1.7240 8 1 3.8834 0.8067 2.4969 9 6 5.5797 0.3445 1.2715 10 7 5.9916 -0.2794 0.1882 11 14 6.7445 1.4719 2.1999 12 1 6.0430 2.0496 3.3743 13 1 7.9236 0.6952 2.6596 14 1 7.1925 2.5676 1.3032 15 7 2.0183 -0.6907 -1.1962 16 6 2.1418 -0.0197 -2.3584 17 8 1.8526 1.1604 -2.4131 18 6 2.6264 -0.7147 -3.5610 19 6 2.8097 -0.1942 -4.8301 20 6 3.2827 -1.1509 -5.6981 21 7 3.4724 -2.3472 -5.2386 22 16 3.1026 -2.4125 -3.7213 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7516 -0.1583 2.1370 27 1 1.6053 -1.7198 1.2951 28 1 4.3539 -1.7640 -0.4799 29 1 5.0466 -2.2394 1.0893 30 1 3.4422 -2.8399 0.6062 31 1 6.9001 -0.1541 -0.1278 32 1 2.2490 -1.6318 -1.1526 33 1 2.6098 0.8314 -5.1032 34 1 3.4849 -0.9133 -6.7322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699448673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:11 Heat of formation + Delta-G solvation = 30.987088 kcal Electronic energy + Delta-G solvation = -18788.712428 eV Core-core repulsion = 15849.420404 eV Total energy + Delta-G solvation = -2939.292024 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.57138 -38.67150 -36.35176 -34.06935 -31.84967 -30.99706 -30.06960 -26.21445 -25.95066 -25.55630 -22.65879 -21.33958 -20.11792 -19.73500 -18.32869 -16.88824 -16.63835 -15.58374 -15.01041 -14.97426 -14.57632 -14.06814 -13.61644 -13.53443 -13.26978 -13.09833 -12.91197 -12.18630 -12.02311 -11.47719 -11.26516 -11.07306 -10.87668 -10.78934 -10.66451 -10.57901 -10.23868 -9.97216 -9.88588 -9.61247 -9.52565 -8.74926 -8.62952 -8.45117 -6.77624 -5.74824 -3.21382 0.48305 1.44123 1.99777 2.35711 3.37618 3.43629 3.45653 3.46807 3.64705 4.49228 4.91212 5.08172 5.25729 5.34049 5.46316 5.63919 5.74332 5.83238 5.92017 5.95232 6.06738 6.19182 6.43668 6.48704 6.57123 6.60929 6.82560 7.04665 7.28674 7.62909 7.79448 7.94595 8.37075 8.60998 9.20775 9.82939 10.30923 11.30323 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.006837 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.133143 B = 4094.495216 C = 4751.342302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.117 3.883 3 H 0.089 0.911 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.159 3.841 7 C -0.256 4.256 8 H 0.069 0.931 9 C 0.005 3.995 10 N -0.904 5.904 11 Si 0.903 3.097 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.291 1.291 15 N -0.688 5.688 16 C 0.597 3.403 17 O -0.535 6.535 18 C -0.248 4.248 19 C -0.124 4.124 20 C 0.056 3.944 21 N -0.529 5.529 22 S 0.425 5.575 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.031 0.969 29 H 0.044 0.956 30 H -0.004 1.004 31 H 0.251 0.749 32 H 0.394 0.606 33 H 0.172 0.828 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 -4.627 -6.740 12.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 H 0.107 0.893 4 C 0.013 3.987 5 N -0.319 5.319 6 C 0.014 3.986 7 C -0.386 4.386 8 H 0.087 0.913 9 C -0.193 4.193 10 N -0.549 5.549 11 Si 0.733 3.267 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.218 1.218 15 N -0.338 5.338 16 C 0.381 3.619 17 O -0.413 6.413 18 C -0.382 4.382 19 C -0.159 4.159 20 C -0.137 4.137 21 N -0.359 5.359 22 S 0.579 5.421 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.014 0.986 31 H 0.061 0.939 32 H 0.228 0.772 33 H 0.190 0.810 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.365 -5.917 -6.412 12.087 hybrid contribution 0.785 2.051 -0.442 2.240 sum -7.580 -3.866 -6.854 10.926 Atomic orbital electron populations 1.22167 0.96575 1.01277 1.01900 1.21980 0.91851 0.99308 0.85917 0.89270 1.21226 0.85872 0.97328 0.94248 1.43900 0.99026 1.20888 1.68130 1.20882 0.94731 0.85089 0.97896 1.19207 0.94558 1.10557 1.14256 0.91331 1.25029 0.98921 0.99026 0.96337 1.70040 1.17160 1.45602 1.22061 0.86205 0.81043 0.80238 0.79166 1.20313 1.21688 1.21794 1.45673 1.65545 1.13560 1.08974 1.16630 0.77710 0.85927 0.81642 1.90768 1.50915 1.14790 1.84799 1.27023 1.10095 1.01928 0.99135 1.22056 1.00646 1.02385 0.90798 1.22203 1.01560 0.87001 1.02895 1.72176 1.24893 1.26468 1.12339 1.81687 1.50445 1.06217 1.03760 0.92877 0.93047 0.91808 0.91989 0.93862 0.95073 0.93691 0.98568 0.93878 0.77168 0.81049 0.80355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.48 37.16 0.35 -1.96 16 2 C 0.12 2.12 2.88 -67.93 -0.20 1.93 16 3 H 0.09 1.96 7.58 -51.93 -0.39 1.57 16 4 C 0.14 2.65 5.33 -4.04 -0.02 2.62 16 5 N -0.60 -13.99 2.78 -181.11 -0.50 -14.49 16 6 C 0.16 3.59 7.61 59.85 0.46 4.05 16 7 C -0.26 -6.81 9.66 -15.06 -0.15 -6.95 16 8 H 0.07 1.80 7.85 -52.48 -0.41 1.39 16 9 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 10 N -0.90 -25.73 10.66 55.49 0.59 -25.14 16 11 Si 0.90 21.89 29.57 -169.99 -5.03 16.86 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 15 N -0.69 -12.48 4.41 -54.98 -0.24 -12.72 16 16 C 0.60 11.54 7.76 -12.67 -0.10 11.44 16 17 O -0.53 -11.89 16.63 5.25 0.09 -11.80 16 18 C -0.25 -4.09 6.76 -35.93 -0.24 -4.33 16 19 C -0.12 -1.76 10.40 -39.77 -0.41 -2.18 16 20 C 0.06 0.72 11.14 -18.76 -0.21 0.51 16 21 N -0.53 -7.70 11.29 21.63 0.24 -7.46 16 22 S 0.42 6.08 22.81 -107.50 -2.45 3.63 16 23 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 1.12 8.03 -51.93 -0.42 0.70 16 27 H 0.04 0.70 7.86 -51.93 -0.41 0.30 16 28 H 0.03 0.75 6.90 -51.93 -0.36 0.39 16 29 H 0.04 1.13 7.30 -51.93 -0.38 0.75 16 30 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 31 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.39 6.56 6.55 -40.82 -0.27 6.30 16 33 H 0.17 2.19 8.06 -52.49 -0.42 1.76 16 34 H 0.18 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -31.77 304.39 -7.61 -39.38 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.29 Total: 1.96 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -0.61 Total: 5.18 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.09 Total: -59.81 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -2.45 Total: 3.63 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.77 -7.61 -39.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699448673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.370 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds