Wall clock time and date at job start Mon Mar 30 2020 00:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47224 * 2 1 4 4 C 1.53005 * 109.46936 * 119.99918 * 2 1 3 5 5 N 1.46498 * 109.46824 * 175.00005 * 4 2 1 6 6 C 1.46501 * 119.99922 * 269.99480 * 5 4 2 7 7 C 1.36929 * 120.00106 * 90.00253 * 5 4 2 8 8 H 1.08007 * 119.99972 * 23.63983 * 7 5 4 9 9 C 1.38811 * 120.00001 * 203.64079 * 7 5 4 10 10 N 1.31620 * 120.00052 * 11.27497 * 9 7 5 11 11 Si 1.86808 * 120.00115 * 191.27263 * 9 7 5 12 12 H 1.48498 * 109.46985 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47255 * 120.00184 * 11 9 7 14 14 H 1.48504 * 109.47119 * 240.00340 * 11 9 7 15 15 N 1.46504 * 109.46976 * 239.99866 * 2 1 3 16 16 C 1.34767 * 119.99931 * 84.72864 * 15 2 1 17 17 O 1.21630 * 120.00316 * 0.27104 * 16 15 2 18 18 C 1.47107 * 119.99942 * 180.27479 * 16 15 2 19 19 C 1.38387 * 127.99763 * 179.70524 * 18 16 15 20 20 C 1.37570 * 111.26129 * 179.82470 * 19 18 16 21 21 N 1.29553 * 117.94982 * 0.50459 * 20 19 18 22 22 S 1.56304 * 110.38038 * 359.71093 * 21 20 19 23 23 H 1.09009 * 109.47222 * 60.00180 * 1 2 3 24 24 H 1.09002 * 109.47617 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47086 * 300.00218 * 1 2 3 26 26 H 1.08999 * 109.47270 * 294.99930 * 4 2 1 27 27 H 1.09002 * 109.46747 * 55.00145 * 4 2 1 28 28 H 1.09004 * 109.46834 * 94.58124 * 6 5 4 29 29 H 1.08997 * 109.47550 * 214.58572 * 6 5 4 30 30 H 1.09004 * 109.47288 * 334.58996 * 6 5 4 31 31 H 0.97003 * 119.99770 * 180.02562 * 10 9 7 32 32 H 0.97001 * 119.99645 * 264.99873 * 15 2 1 33 33 H 1.08001 * 124.36771 * 359.97438 * 19 18 16 34 34 H 1.08008 * 121.02823 * 180.19491 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1257 -1.9920 0.5613 7 6 4.2798 0.1647 1.7240 8 1 3.8834 0.8067 2.4969 9 6 5.5797 0.3445 1.2715 10 7 5.9916 -0.2794 0.1882 11 14 6.7445 1.4719 2.1999 12 1 6.0430 2.0496 3.3743 13 1 7.9236 0.6952 2.6596 14 1 7.1925 2.5676 1.3032 15 7 2.0183 -0.6907 -1.1962 16 6 2.1418 -0.0197 -2.3584 17 8 1.8526 1.1604 -2.4131 18 6 2.6264 -0.7147 -3.5610 19 6 2.8097 -0.1942 -4.8301 20 6 3.2827 -1.1509 -5.6981 21 7 3.4724 -2.3472 -5.2386 22 16 3.1026 -2.4125 -3.7213 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7516 -0.1583 2.1370 27 1 1.6053 -1.7198 1.2951 28 1 4.3539 -1.7640 -0.4799 29 1 5.0466 -2.2394 1.0893 30 1 3.4422 -2.8399 0.6062 31 1 6.9001 -0.1541 -0.1278 32 1 2.2490 -1.6318 -1.1526 33 1 2.6098 0.8314 -5.1032 34 1 3.4849 -0.9133 -6.7322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699448673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:11 Heat of formation + Delta-G solvation = 9.518738 kcal Electronic energy + Delta-G solvation = -18789.643366 eV Core-core repulsion = 15849.420404 eV Total energy + Delta-G solvation = -2940.222962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.94506 -39.90488 -38.01294 -35.78342 -33.35789 -32.63287 -31.48733 -27.96824 -27.41061 -27.03654 -24.04913 -22.98572 -21.61500 -21.03110 -19.60397 -18.76815 -17.90140 -17.10947 -16.80510 -16.34426 -15.90883 -15.57161 -15.22408 -15.12050 -14.72618 -14.51071 -14.24632 -13.73902 -13.45202 -13.07772 -12.86754 -12.70237 -12.53706 -12.33790 -12.27311 -12.01033 -11.81244 -11.77900 -11.67950 -11.12413 -10.76688 -10.63213 -10.02213 -9.78492 -8.70736 -7.80492 -5.26827 -0.71702 0.27437 0.89734 1.25535 1.43427 1.46304 1.54488 2.03311 2.26693 2.51915 3.33921 3.66065 3.75533 4.02492 4.11097 4.21210 4.42324 4.53378 4.73780 4.79418 4.85308 4.88013 4.91315 5.02985 5.19996 5.38433 5.40192 5.49552 5.61384 5.68021 5.80551 6.36516 6.51160 7.16600 7.19887 7.91649 8.32279 9.21733 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.006837 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.133143 B = 4094.495216 C = 4751.342302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.120 3.880 3 H 0.043 0.957 4 C 0.140 3.860 5 N -0.612 5.612 6 C 0.170 3.830 7 C -0.256 4.256 8 H 0.069 0.931 9 C -0.050 4.050 10 N -0.929 5.929 11 Si 0.957 3.043 12 H -0.266 1.266 13 H -0.291 1.291 14 H -0.302 1.302 15 N -0.685 5.685 16 C 0.591 3.409 17 O -0.576 6.576 18 C -0.286 4.286 19 C -0.115 4.115 20 C 0.064 3.936 21 N -0.541 5.541 22 S 0.444 5.556 23 H 0.040 0.960 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.013 0.987 29 H 0.012 0.988 30 H 0.038 0.962 31 H 0.243 0.757 32 H 0.401 0.599 33 H 0.184 0.816 34 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.864 -5.524 -6.964 13.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.013 3.987 3 H 0.062 0.938 4 C 0.013 3.987 5 N -0.334 5.334 6 C 0.025 3.975 7 C -0.387 4.387 8 H 0.087 0.913 9 C -0.245 4.245 10 N -0.576 5.576 11 Si 0.787 3.213 12 H -0.191 1.191 13 H -0.218 1.218 14 H -0.230 1.230 15 N -0.334 5.334 16 C 0.377 3.623 17 O -0.458 6.458 18 C -0.420 4.420 19 C -0.151 4.151 20 C -0.128 4.128 21 N -0.371 5.371 22 S 0.600 5.400 23 H 0.060 0.940 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.237 0.763 33 H 0.201 0.799 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -9.471 -6.853 -6.598 13.424 hybrid contribution 1.064 2.299 -0.397 2.564 sum -8.407 -4.554 -6.995 11.846 Atomic orbital electron populations 1.22043 0.93207 1.03093 1.02246 1.21832 0.94383 0.96694 0.85769 0.93824 1.21426 0.83210 0.99484 0.94541 1.44103 1.00913 1.20443 1.67945 1.20685 0.94479 0.86211 0.96150 1.19502 0.94944 1.10451 1.13756 0.91342 1.25671 1.00521 1.00910 0.97406 1.70189 1.16808 1.47219 1.23401 0.85345 0.79351 0.78368 0.78240 1.19075 1.21806 1.22972 1.45685 1.65152 1.13838 1.08743 1.17018 0.77086 0.85627 0.82593 1.90729 1.52910 1.16500 1.85622 1.26923 1.12452 1.03616 0.98986 1.22387 0.99278 1.03272 0.90172 1.22662 0.99947 0.85865 1.04293 1.72237 1.25215 1.27269 1.12375 1.81538 1.50091 1.04523 1.03878 0.94037 0.90405 0.89994 0.91220 0.90328 0.96924 0.96897 0.94350 0.94768 0.76292 0.79930 0.76416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.48 71.98 0.68 -3.26 16 2 C 0.12 4.29 2.88 44.99 0.13 4.42 16 3 H 0.04 1.96 7.58 -2.39 -0.02 1.94 16 4 C 0.14 4.96 5.33 86.38 0.46 5.42 16 5 N -0.61 -28.16 2.78 -726.92 -2.02 -30.18 16 6 C 0.17 7.55 7.61 127.77 0.97 8.52 16 7 C -0.26 -13.59 9.66 84.03 0.81 -12.78 16 8 H 0.07 3.57 7.85 -2.91 -0.02 3.55 16 9 C -0.05 -2.76 5.13 84.86 0.44 -2.32 16 10 N -0.93 -53.96 10.66 21.65 0.23 -53.73 16 11 Si 0.96 45.58 29.57 68.60 2.03 47.60 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 14 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 15 N -0.69 -24.55 4.41 -446.12 -1.97 -26.52 16 16 C 0.59 23.10 7.76 86.57 0.67 23.78 16 17 O -0.58 -26.36 16.63 -4.13 -0.07 -26.43 16 18 C -0.29 -9.33 6.76 24.63 0.17 -9.16 16 19 C -0.11 -3.13 10.40 22.15 0.23 -2.90 16 20 C 0.06 1.49 11.14 84.87 0.95 2.44 16 21 N -0.54 -14.68 11.29 -85.49 -0.97 -15.64 16 22 S 0.44 12.24 22.81 -56.49 -1.29 10.95 16 23 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 2.37 8.03 -2.39 -0.02 2.35 16 27 H 0.08 2.26 7.86 -2.39 -0.02 2.24 16 28 H 0.01 0.61 6.90 -2.38 -0.02 0.59 16 29 H 0.01 0.62 7.30 -2.39 -0.02 0.61 16 30 H 0.04 1.36 7.84 -2.38 -0.02 1.34 16 31 H 0.24 13.97 8.31 -92.71 -0.77 13.20 16 32 H 0.40 12.94 6.55 -92.71 -0.61 12.33 16 33 H 0.18 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.22 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -69.76 304.39 1.96 -67.80 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.51 Total: 12.01 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 5.51 Total: 14.14 kcal Atomic # 7 Polarization: -121.35 SS G_CDS: -4.72 Total: -126.07 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.07 Total: -26.43 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 12.24 SS G_CDS: -1.29 Total: 10.95 kcal Total: -69.76 1.96 -67.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699448673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.320 kcal (2) G-P(sol) polarization free energy of solvation -69.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds