Wall clock time and date at job start Mon Mar 30 2020 00:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47055 * 2 1 4 4 C 1.53007 * 109.46953 * 240.00555 * 2 1 3 5 5 C 1.52994 * 109.47045 * 174.99851 * 4 2 1 6 6 N 1.46502 * 109.47229 * 179.97438 * 5 4 2 7 7 C 1.36932 * 120.00345 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00048 * 0.02562 * 7 6 5 9 9 C 1.38817 * 120.00018 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99900 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99733 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47212 * 60.00225 * 11 9 7 13 13 H 1.48499 * 109.46860 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47243 * 299.99755 * 11 9 7 15 15 N 1.46493 * 109.47351 * 120.00613 * 2 1 3 16 16 C 1.34782 * 119.99750 * 274.99560 * 15 2 1 17 17 O 1.21628 * 120.00190 * 0.02562 * 16 15 2 18 18 C 1.47107 * 120.00077 * 180.02562 * 16 15 2 19 19 C 1.38386 * 127.99645 * 180.02562 * 18 16 15 20 20 C 1.37580 * 111.25840 * 180.26663 * 19 18 16 21 21 N 1.29553 * 117.95128 * 359.46570 * 20 19 18 22 22 S 1.56309 * 110.37822 * 0.52347 * 21 20 19 23 23 H 1.08998 * 109.47743 * 59.99838 * 1 2 3 24 24 H 1.08999 * 109.47055 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46877 * 299.99508 * 1 2 3 26 26 H 1.08998 * 109.46637 * 294.99875 * 4 2 1 27 27 H 1.08992 * 109.47269 * 54.99528 * 4 2 1 28 28 H 1.08998 * 109.47422 * 299.99543 * 5 4 2 29 29 H 1.09004 * 109.47333 * 60.00126 * 5 4 2 30 30 H 0.97002 * 119.99812 * 0.02562 * 6 5 4 31 31 H 0.97006 * 119.99735 * 180.02562 * 10 9 7 32 32 H 0.96995 * 120.00661 * 95.00441 * 15 2 1 33 33 H 1.08002 * 124.36697 * 359.97438 * 19 18 16 34 34 H 1.07998 * 121.02107 * 179.73245 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5647 -0.6132 -1.3139 6 7 4.0531 -1.3042 -2.5098 7 6 5.3950 -1.3402 -2.7798 8 1 6.0935 -0.8595 -2.1108 9 6 5.8577 -1.9945 -3.9132 10 7 5.0064 -2.5799 -4.7287 11 14 7.6885 -2.0442 -4.2811 12 1 8.3998 -2.7156 -3.1638 13 1 7.9202 -2.7973 -5.5398 14 1 8.2007 -0.6586 -4.4326 15 7 2.0183 -0.6907 1.1960 16 6 2.1471 -0.0184 2.3571 17 8 1.8575 1.1616 2.4119 18 6 2.6381 -0.7117 3.5580 19 6 2.8321 -0.1885 4.8243 20 6 3.3102 -1.1440 5.6910 21 7 3.4937 -2.3419 5.2330 22 16 3.1171 -2.4088 3.7175 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.7515 -1.7714 -1.2057 27 1 1.6053 -0.2617 -2.1370 28 1 3.8531 0.4370 -1.3575 29 1 3.9994 -1.0728 -0.4262 30 1 3.4257 -1.7356 -3.1108 31 1 5.3298 -3.0375 -5.5206 32 1 2.2491 -1.6318 1.1524 33 1 2.6382 0.8387 5.0959 34 1 3.5218 -0.9039 6.7225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732695435.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:34 Heat of formation + Delta-G solvation = 10.720898 kcal Electronic energy + Delta-G solvation = -17690.826561 eV Core-core repulsion = 14750.655729 eV Total energy + Delta-G solvation = -2940.170832 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.09112 -39.11968 -36.57206 -34.40122 -32.40648 -31.50660 -30.52168 -27.91199 -26.30518 -24.07892 -22.80998 -21.47631 -20.66447 -20.22249 -18.82298 -17.30360 -16.87645 -16.28970 -15.44608 -15.14982 -14.74541 -14.37961 -14.07331 -13.81809 -13.56676 -13.45028 -13.36040 -12.85706 -12.47729 -11.95111 -11.56116 -11.23194 -11.05769 -10.98898 -10.81645 -10.68556 -10.61062 -10.15314 -10.08589 -9.94736 -9.71509 -9.18415 -9.06044 -8.87668 -6.94497 -5.78071 -3.06981 0.06924 1.04705 1.62964 1.97977 2.94449 2.99887 3.43743 3.48122 3.49113 4.44800 4.56500 4.72232 4.83090 4.94161 5.17195 5.29405 5.39932 5.53294 5.55752 5.67447 5.69800 5.88039 5.96569 6.17915 6.22545 6.23666 6.29640 6.40257 6.77382 6.81966 7.34910 7.68554 8.01355 8.40929 9.52110 10.09202 10.43982 11.44742 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.004343 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.957565 B = 6446.309308 C = 7429.896506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.093 0.907 4 C -0.136 4.136 5 C 0.153 3.847 6 N -0.734 5.734 7 C -0.241 4.241 8 H 0.069 0.931 9 C -0.013 4.013 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.710 5.710 16 C 0.597 3.403 17 O -0.527 6.527 18 C -0.267 4.267 19 C -0.113 4.113 20 C 0.056 3.944 21 N -0.521 5.521 22 S 0.429 5.571 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.384 0.616 31 H 0.256 0.744 32 H 0.401 0.599 33 H 0.175 0.825 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.018 2.254 17.819 20.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.174 4.174 5 C 0.025 3.975 6 N -0.378 5.378 7 C -0.372 4.372 8 H 0.087 0.913 9 C -0.209 4.209 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 N -0.362 5.362 16 C 0.381 3.619 17 O -0.404 6.404 18 C -0.401 4.401 19 C -0.149 4.149 20 C -0.136 4.136 21 N -0.351 5.351 22 S 0.583 5.417 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.217 0.783 31 H 0.066 0.934 32 H 0.235 0.765 33 H 0.192 0.808 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.609 1.005 17.442 19.477 hybrid contribution 0.754 1.076 0.286 1.345 sum -7.855 2.081 17.729 19.502 Atomic orbital electron populations 1.22175 0.95097 1.02226 1.02527 1.21076 0.93792 0.97796 0.83188 0.88927 1.22088 0.98153 1.00918 0.96276 1.20646 0.90297 0.95731 0.90821 1.42348 1.05392 1.64952 1.25088 1.19182 0.83822 1.28658 1.05568 0.91301 1.24732 0.97697 1.00823 0.97611 1.69647 1.32888 1.40605 1.15120 0.86269 0.85116 0.77520 0.77301 1.21251 1.21636 1.21247 1.46015 1.66615 1.14084 1.09461 1.16710 0.77652 0.85973 0.81549 1.90813 1.50204 1.14821 1.84540 1.26952 1.11563 1.02362 0.99185 1.22119 0.99599 1.02555 0.90608 1.22285 1.01412 0.86763 1.03160 1.72211 1.24370 1.26299 1.12209 1.81856 1.50036 1.05652 1.04150 0.91219 0.92352 0.92307 0.91179 0.89904 0.96325 0.96445 0.78278 0.93445 0.76465 0.80774 0.80018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.48 37.16 0.35 -1.41 16 2 C 0.15 1.87 2.57 -67.93 -0.17 1.69 16 3 H 0.09 1.33 7.58 -51.93 -0.39 0.93 16 4 C -0.14 -2.00 4.87 -26.73 -0.13 -2.13 16 5 C 0.15 2.97 6.15 -4.04 -0.02 2.95 16 6 N -0.73 -18.32 5.60 -59.91 -0.34 -18.66 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 10 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 11 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 N -0.71 -8.72 4.53 -54.99 -0.25 -8.97 16 16 C 0.60 7.98 7.77 -12.66 -0.10 7.88 16 17 O -0.53 -8.55 16.62 5.25 0.09 -8.46 16 18 C -0.27 -3.02 6.76 -35.93 -0.24 -3.26 16 19 C -0.11 -1.09 10.40 -39.77 -0.41 -1.51 16 20 C 0.06 0.50 11.14 -18.75 -0.21 0.29 16 21 N -0.52 -5.74 11.29 21.63 0.24 -5.49 16 22 S 0.43 4.36 22.81 -107.50 -2.45 1.91 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.02 0.34 7.75 -51.93 -0.40 -0.06 16 30 H 0.38 9.96 7.67 -40.82 -0.31 9.65 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.40 4.34 7.98 -40.82 -0.33 4.01 16 33 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 311.51 15.07 4.69 4.69 Total: -1.00 -33.07 311.51 -7.86 -40.93 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.36 Total: 6.85 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.19 Total: -2.85 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.38 Total: -60.41 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -2.45 Total: 1.91 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.07 -7.86 -40.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732695435.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.656 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds