Wall clock time and date at job start Mon Mar 30 2020 00:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47055 * 2 1 4 4 C 1.53007 * 109.46953 * 240.00555 * 2 1 3 5 5 C 1.52994 * 109.47045 * 174.99851 * 4 2 1 6 6 N 1.46502 * 109.47229 * 179.97438 * 5 4 2 7 7 C 1.36932 * 120.00345 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00048 * 0.02562 * 7 6 5 9 9 C 1.38817 * 120.00018 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99900 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99733 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47212 * 60.00225 * 11 9 7 13 13 H 1.48499 * 109.46860 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47243 * 299.99755 * 11 9 7 15 15 N 1.46493 * 109.47351 * 120.00613 * 2 1 3 16 16 C 1.34782 * 119.99750 * 274.99560 * 15 2 1 17 17 O 1.21628 * 120.00190 * 0.02562 * 16 15 2 18 18 C 1.47107 * 120.00077 * 180.02562 * 16 15 2 19 19 C 1.38386 * 127.99645 * 180.02562 * 18 16 15 20 20 C 1.37580 * 111.25840 * 180.26663 * 19 18 16 21 21 N 1.29553 * 117.95128 * 359.46570 * 20 19 18 22 22 S 1.56309 * 110.37822 * 0.52347 * 21 20 19 23 23 H 1.08998 * 109.47743 * 59.99838 * 1 2 3 24 24 H 1.08999 * 109.47055 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46877 * 299.99508 * 1 2 3 26 26 H 1.08998 * 109.46637 * 294.99875 * 4 2 1 27 27 H 1.08992 * 109.47269 * 54.99528 * 4 2 1 28 28 H 1.08998 * 109.47422 * 299.99543 * 5 4 2 29 29 H 1.09004 * 109.47333 * 60.00126 * 5 4 2 30 30 H 0.97002 * 119.99812 * 0.02562 * 6 5 4 31 31 H 0.97006 * 119.99735 * 180.02562 * 10 9 7 32 32 H 0.96995 * 120.00661 * 95.00441 * 15 2 1 33 33 H 1.08002 * 124.36697 * 359.97438 * 19 18 16 34 34 H 1.07998 * 121.02107 * 179.73245 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5647 -0.6132 -1.3139 6 7 4.0531 -1.3042 -2.5098 7 6 5.3950 -1.3402 -2.7798 8 1 6.0935 -0.8595 -2.1108 9 6 5.8577 -1.9945 -3.9132 10 7 5.0064 -2.5799 -4.7287 11 14 7.6885 -2.0442 -4.2811 12 1 8.3998 -2.7156 -3.1638 13 1 7.9202 -2.7973 -5.5398 14 1 8.2007 -0.6586 -4.4326 15 7 2.0183 -0.6907 1.1960 16 6 2.1471 -0.0184 2.3571 17 8 1.8575 1.1616 2.4119 18 6 2.6381 -0.7117 3.5580 19 6 2.8321 -0.1885 4.8243 20 6 3.3102 -1.1440 5.6910 21 7 3.4937 -2.3419 5.2330 22 16 3.1171 -2.4088 3.7175 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.7515 -1.7714 -1.2057 27 1 1.6053 -0.2617 -2.1370 28 1 3.8531 0.4370 -1.3575 29 1 3.9994 -1.0728 -0.4262 30 1 3.4257 -1.7356 -3.1108 31 1 5.3298 -3.0375 -5.5206 32 1 2.2491 -1.6318 1.1524 33 1 2.6382 0.8387 5.0959 34 1 3.5218 -0.9039 6.7225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732695435.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:33 Heat of formation + Delta-G solvation = -12.698714 kcal Electronic energy + Delta-G solvation = -17691.842112 eV Core-core repulsion = 14750.655729 eV Total energy + Delta-G solvation = -2941.186383 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.08444 -39.96812 -37.85952 -36.11897 -33.75309 -32.87132 -31.72922 -29.41610 -27.14539 -25.85066 -23.89758 -22.98819 -21.77598 -21.13736 -19.74125 -19.14466 -17.90383 -17.35886 -16.72459 -16.33908 -16.07397 -15.53090 -15.36711 -15.14605 -15.08861 -14.71965 -14.32129 -14.20053 -13.62946 -13.10916 -12.90923 -12.86241 -12.45249 -12.30513 -12.27515 -12.00271 -11.94555 -11.76139 -11.64352 -11.22883 -10.93207 -10.81579 -10.19969 -9.83755 -9.00271 -7.95493 -5.24285 -0.76392 0.24019 0.86286 1.21721 1.47906 1.50288 1.56588 1.96490 2.02771 2.55934 3.38254 3.52904 3.69210 4.00836 4.05495 4.09041 4.17027 4.39573 4.57273 4.63880 4.71354 4.78116 4.84444 4.88048 5.00194 5.18861 5.28296 5.34079 5.46967 5.48750 5.49304 6.26993 6.35578 7.00352 7.33987 8.09093 8.33257 9.27570 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.004343 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.957565 B = 6446.309308 C = 7429.896506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.152 3.848 3 H 0.077 0.923 4 C -0.121 4.121 5 C 0.151 3.849 6 N -0.745 5.745 7 C -0.250 4.250 8 H 0.071 0.929 9 C -0.070 4.070 10 N -0.967 5.967 11 Si 0.971 3.029 12 H -0.278 1.278 13 H -0.293 1.293 14 H -0.280 1.280 15 N -0.707 5.707 16 C 0.598 3.402 17 O -0.561 6.561 18 C -0.290 4.290 19 C -0.104 4.104 20 C 0.063 3.937 21 N -0.542 5.542 22 S 0.437 5.563 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.009 0.991 29 H 0.022 0.978 30 H 0.376 0.624 31 H 0.252 0.748 32 H 0.408 0.592 33 H 0.189 0.811 34 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.937 2.223 19.112 21.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.047 3.953 3 H 0.095 0.905 4 C -0.159 4.159 5 C 0.025 3.975 6 N -0.388 5.388 7 C -0.382 4.382 8 H 0.089 0.911 9 C -0.263 4.263 10 N -0.617 5.617 11 Si 0.799 3.201 12 H -0.204 1.204 13 H -0.219 1.219 14 H -0.206 1.206 15 N -0.358 5.358 16 C 0.383 3.617 17 O -0.441 6.441 18 C -0.424 4.424 19 C -0.141 4.141 20 C -0.129 4.129 21 N -0.373 5.373 22 S 0.593 5.407 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.027 0.973 29 H 0.040 0.960 30 H 0.209 0.791 31 H 0.061 0.939 32 H 0.244 0.756 33 H 0.206 0.794 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -8.530 0.963 18.760 20.630 hybrid contribution 0.724 1.117 -0.022 1.331 sum -7.806 2.080 18.737 20.405 Atomic orbital electron populations 1.22102 0.93120 1.03207 1.02806 1.20951 0.95200 0.96607 0.82514 0.90524 1.21929 0.94577 1.01941 0.97421 1.20790 0.93551 0.94332 0.88842 1.42540 1.04468 1.65302 1.26505 1.19556 0.85327 1.27862 1.05444 0.91138 1.25515 1.01855 1.01141 0.97761 1.69790 1.34618 1.41748 1.15531 0.85261 0.80269 0.77568 0.76966 1.20365 1.21887 1.20628 1.45993 1.66253 1.14399 1.09156 1.16932 0.77005 0.85599 0.82128 1.90790 1.51905 1.16248 1.85165 1.26855 1.13134 1.03268 0.99109 1.22423 0.98301 1.03371 0.89975 1.22734 0.99910 0.85783 1.04447 1.72260 1.25130 1.27304 1.12560 1.81760 1.50063 1.04787 1.04133 0.90103 0.91009 0.92864 0.90104 0.89586 0.97306 0.96015 0.79147 0.93881 0.75591 0.79368 0.76685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.48 71.98 0.68 -2.43 16 2 C 0.15 3.75 2.57 44.99 0.12 3.87 16 3 H 0.08 2.18 7.58 -2.39 -0.02 2.16 16 4 C -0.12 -3.42 4.87 30.59 0.15 -3.27 16 5 C 0.15 5.84 6.15 86.38 0.53 6.37 16 6 N -0.75 -37.20 5.60 -343.46 -1.92 -39.13 16 7 C -0.25 -13.96 9.99 84.04 0.84 -13.12 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 9 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 10 N -0.97 -58.30 13.06 21.65 0.28 -58.01 16 11 Si 0.97 45.83 29.55 68.60 2.03 47.86 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 N -0.71 -16.77 4.53 -446.12 -2.02 -18.79 16 16 C 0.60 15.64 7.77 86.57 0.67 16.31 16 17 O -0.56 -18.11 16.62 -4.12 -0.07 -18.18 16 18 C -0.29 -6.27 6.76 24.63 0.17 -6.10 16 19 C -0.10 -1.83 10.40 22.15 0.23 -1.60 16 20 C 0.06 0.98 11.14 84.87 0.95 1.93 16 21 N -0.54 -10.99 11.29 -85.49 -0.97 -11.96 16 22 S 0.44 8.41 22.81 -56.49 -1.29 7.12 16 23 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.02 0.83 7.75 -2.38 -0.02 0.81 16 30 H 0.38 19.64 7.67 -92.71 -0.71 18.93 16 31 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 32 H 0.41 8.43 7.98 -92.71 -0.74 7.69 16 33 H 0.19 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.22 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -69.89 311.51 0.52 -69.37 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -0.32 Total: 23.29 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 4.80 Total: -1.56 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -4.63 Total: -127.89 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.07 Total: -18.18 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 16 Polarization: 8.41 SS G_CDS: -1.29 Total: 7.12 kcal Total: -69.89 0.52 -69.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732695435.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.673 kcal (2) G-P(sol) polarization free energy of solvation -69.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds