Wall clock time and date at job start Mon Mar 30 2020 00:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47075 * 2 1 4 4 N 1.46502 * 109.47095 * 120.00686 * 2 1 3 5 5 C 1.34772 * 119.99601 * 274.99532 * 4 2 1 6 6 O 1.21578 * 120.00042 * 0.02562 * 5 4 2 7 7 C 1.47693 * 120.00208 * 180.02562 * 5 4 2 8 8 C 1.39482 * 122.10567 * 180.02562 * 7 5 4 9 9 C 1.35000 * 111.68429 * 179.70786 * 8 7 5 10 10 S 1.71762 * 105.44902 * 0.27069 * 9 8 7 11 11 N 1.30609 * 122.10149 * 0.23684 * 7 5 4 12 12 C 1.53001 * 109.46961 * 240.00336 * 2 1 3 13 13 H 1.09005 * 109.47187 * 300.00251 * 12 2 1 14 14 C 1.52995 * 109.46924 * 180.02562 * 12 2 1 15 15 N 1.46498 * 109.47084 * 59.99713 * 12 2 1 16 16 C 1.36945 * 120.00014 * 204.99823 * 15 12 2 17 17 H 1.07997 * 119.99550 * 0.02562 * 16 15 12 18 18 C 1.38810 * 119.99547 * 180.02562 * 16 15 12 19 19 N 1.31614 * 120.00506 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99591 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46910 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47140 * 119.99755 * 20 18 16 23 23 H 1.48501 * 109.46981 * 239.99970 * 20 18 16 24 24 H 1.09003 * 109.46999 * 299.99476 * 1 2 3 25 25 H 1.08997 * 109.47008 * 59.99623 * 1 2 3 26 26 H 1.08999 * 109.46802 * 179.97438 * 1 2 3 27 27 H 0.96995 * 120.00332 * 94.99854 * 4 2 1 28 28 H 1.08002 * 124.16115 * 359.97438 * 8 7 5 29 29 H 1.07999 * 127.27661 * 180.28643 * 9 8 7 30 30 H 1.08996 * 109.47410 * 299.99449 * 14 12 2 31 31 H 1.08997 * 109.47657 * 59.99942 * 14 12 2 32 32 H 1.09003 * 109.46963 * 180.02562 * 14 12 2 33 33 H 0.96995 * 119.99979 * 25.00220 * 15 12 2 34 34 H 0.97005 * 119.99875 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6908 1.1961 5 6 2.1471 -0.0185 2.3571 6 8 1.8576 1.1611 2.4118 7 6 2.6400 -0.7146 3.5628 8 6 2.7896 -0.0620 4.7865 9 6 3.2468 -0.8964 5.7442 10 16 3.4410 -2.4178 4.9709 11 7 2.9670 -1.9790 3.5494 12 6 2.0400 -0.7212 -1.2493 13 1 1.6766 -1.7489 -1.2494 14 6 3.5700 -0.7217 -1.2490 15 7 1.5516 -0.0305 -2.4454 16 6 1.4208 -0.7137 -3.6251 17 1 1.6773 -1.7616 -3.6735 18 6 0.9585 -0.0590 -4.7585 19 7 0.6454 1.2180 -4.6993 20 14 0.7794 -0.9910 -6.3675 21 1 1.1935 -2.4034 -6.1701 22 1 -0.6375 -0.9472 -6.8098 23 1 1.6405 -0.3631 -7.4017 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 2.2491 -1.6319 1.1525 28 1 2.5631 0.9814 4.9490 29 1 3.4478 -0.6578 6.7781 30 1 3.9337 0.3057 -1.2488 31 1 3.9330 -1.2359 -0.3591 32 1 3.9333 -1.2351 -2.1392 33 1 1.3209 0.9106 -2.4018 34 1 0.3220 1.6753 -5.4913 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755241141.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:43 Heat of formation + Delta-G solvation = 15.387394 kcal Electronic energy + Delta-G solvation = -18098.543946 eV Core-core repulsion = 15158.575468 eV Total energy + Delta-G solvation = -2939.968478 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49497 -38.55774 -36.62724 -33.97904 -32.10359 -31.43653 -29.57931 -28.38224 -26.53962 -23.98394 -23.07662 -21.47884 -20.21142 -19.82930 -18.52064 -17.78909 -17.26045 -15.69639 -15.48198 -14.83641 -14.57281 -14.13655 -13.66676 -13.62601 -13.47380 -13.24858 -13.01308 -12.41347 -11.83948 -11.68976 -11.51804 -11.42106 -11.16140 -10.94830 -10.83356 -10.67133 -10.17781 -10.13910 -9.97556 -9.84955 -9.65697 -9.12022 -8.98920 -8.73343 -6.98329 -5.77137 -3.06664 0.35697 1.19504 1.56454 1.62519 3.25242 3.27589 3.43372 3.49284 3.51202 4.48347 4.59922 4.82802 5.05922 5.27576 5.33553 5.50224 5.55290 5.69470 5.76632 5.91110 6.08761 6.13045 6.23436 6.40595 6.43943 6.55054 6.64085 6.82685 6.94634 7.04684 7.67560 7.70031 8.28005 8.40561 9.52063 10.07141 10.42598 11.45324 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.043501 B = 0.003713 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.503866 B = 7538.564618 C = 7877.971577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.134 3.866 3 H 0.088 0.912 4 N -0.696 5.696 5 C 0.587 3.413 6 O -0.531 6.531 7 C 0.055 3.945 8 C -0.134 4.134 9 C -0.285 4.285 10 S 0.460 5.540 11 N -0.518 5.518 12 C 0.169 3.831 13 H 0.051 0.949 14 C -0.165 4.165 15 N -0.718 5.718 16 C -0.238 4.238 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 H 0.047 0.953 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.406 0.594 28 H 0.172 0.828 29 H 0.186 0.814 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.385 0.615 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.554 -6.909 22.067 23.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.029 3.971 3 H 0.106 0.894 4 N -0.346 5.346 5 C 0.367 3.633 6 O -0.407 6.407 7 C -0.121 4.121 8 C -0.167 4.167 9 C -0.434 4.434 10 S 0.614 5.386 11 N -0.353 5.353 12 C 0.058 3.942 13 H 0.069 0.931 14 C -0.225 4.225 15 N -0.360 5.360 16 C -0.369 4.369 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.070 0.930 27 H 0.241 0.759 28 H 0.190 0.810 29 H 0.203 0.797 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.220 0.780 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.749 -8.237 21.523 23.751 hybrid contribution -0.457 1.324 -0.785 1.606 sum 5.292 -6.913 20.738 22.491 Atomic orbital electron populations 1.22058 0.94672 1.01905 1.02445 1.21441 0.94641 0.97642 0.83328 0.89436 1.45940 1.65111 1.14429 1.09133 1.17212 0.78205 0.85919 0.81929 1.90810 1.50672 1.14856 1.84344 1.21335 1.04773 0.88840 0.97104 1.21446 1.01576 1.03360 0.90288 1.27193 1.08421 1.01754 1.06037 1.80503 1.51848 1.12099 0.94131 1.72295 1.20780 1.17829 1.24376 1.20382 0.92164 0.95611 0.86004 0.93080 1.22446 0.98999 1.01117 0.99929 1.42295 1.78203 1.10692 1.04801 1.19247 1.36696 0.93906 0.87061 0.91078 1.24736 1.02066 0.95967 0.98038 1.69673 1.50744 1.08634 1.28824 0.86129 0.77295 0.78777 0.84036 1.20579 1.21875 1.21903 0.93373 0.89904 0.92995 0.75901 0.81021 0.79668 0.93395 0.94517 0.92584 0.78030 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.33 37.16 0.35 -2.38 16 2 C 0.13 2.39 2.21 -67.93 -0.15 2.24 16 3 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 4 N -0.70 -10.76 4.38 -54.80 -0.24 -11.00 16 5 C 0.59 9.30 7.78 -12.40 -0.10 9.21 16 6 O -0.53 -9.87 16.32 5.30 0.09 -9.78 16 7 C 0.05 0.71 6.66 -84.06 -0.56 0.15 16 8 C -0.13 -1.40 9.98 -40.27 -0.40 -1.80 16 9 C -0.29 -2.09 11.41 29.58 0.34 -1.76 16 10 S 0.46 3.52 23.20 -107.50 -2.49 1.03 16 11 N -0.52 -6.07 10.71 24.84 0.27 -5.80 16 12 C 0.17 3.34 2.52 -67.93 -0.17 3.17 16 13 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 14 C -0.16 -3.04 9.33 37.16 0.35 -2.70 16 15 N -0.72 -17.67 4.43 -53.43 -0.24 -17.90 16 16 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 20 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.08 1.65 7.44 -51.93 -0.39 1.27 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.41 5.71 7.85 -40.82 -0.32 5.39 16 28 H 0.17 1.70 7.99 -52.49 -0.42 1.29 16 29 H 0.19 0.75 8.06 -52.49 -0.42 0.32 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.58 7.44 -51.93 -0.39 0.19 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.39 10.17 7.58 -40.82 -0.31 9.86 16 34 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 308.34 15.07 4.65 4.65 Total: -1.00 -31.66 308.34 -7.16 -38.82 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -4.29 Total: 10.89 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -0.59 Total: -0.95 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: 0.51 Total: -61.89 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -2.49 Total: 1.03 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.66 -7.16 -38.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755241141.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.205 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds