Wall clock time and date at job start Mon Mar 30 2020 00:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47075 * 2 1 4 4 N 1.46502 * 109.47095 * 120.00686 * 2 1 3 5 5 C 1.34772 * 119.99601 * 274.99532 * 4 2 1 6 6 O 1.21578 * 120.00042 * 0.02562 * 5 4 2 7 7 C 1.47693 * 120.00208 * 180.02562 * 5 4 2 8 8 C 1.39482 * 122.10567 * 180.02562 * 7 5 4 9 9 C 1.35000 * 111.68429 * 179.70786 * 8 7 5 10 10 S 1.71762 * 105.44902 * 0.27069 * 9 8 7 11 11 N 1.30609 * 122.10149 * 0.23684 * 7 5 4 12 12 C 1.53001 * 109.46961 * 240.00336 * 2 1 3 13 13 H 1.09005 * 109.47187 * 300.00251 * 12 2 1 14 14 C 1.52995 * 109.46924 * 180.02562 * 12 2 1 15 15 N 1.46498 * 109.47084 * 59.99713 * 12 2 1 16 16 C 1.36945 * 120.00014 * 204.99823 * 15 12 2 17 17 H 1.07997 * 119.99550 * 0.02562 * 16 15 12 18 18 C 1.38810 * 119.99547 * 180.02562 * 16 15 12 19 19 N 1.31614 * 120.00506 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99591 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46910 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47140 * 119.99755 * 20 18 16 23 23 H 1.48501 * 109.46981 * 239.99970 * 20 18 16 24 24 H 1.09003 * 109.46999 * 299.99476 * 1 2 3 25 25 H 1.08997 * 109.47008 * 59.99623 * 1 2 3 26 26 H 1.08999 * 109.46802 * 179.97438 * 1 2 3 27 27 H 0.96995 * 120.00332 * 94.99854 * 4 2 1 28 28 H 1.08002 * 124.16115 * 359.97438 * 8 7 5 29 29 H 1.07999 * 127.27661 * 180.28643 * 9 8 7 30 30 H 1.08996 * 109.47410 * 299.99449 * 14 12 2 31 31 H 1.08997 * 109.47657 * 59.99942 * 14 12 2 32 32 H 1.09003 * 109.46963 * 180.02562 * 14 12 2 33 33 H 0.96995 * 119.99979 * 25.00220 * 15 12 2 34 34 H 0.97005 * 119.99875 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6908 1.1961 5 6 2.1471 -0.0185 2.3571 6 8 1.8576 1.1611 2.4118 7 6 2.6400 -0.7146 3.5628 8 6 2.7896 -0.0620 4.7865 9 6 3.2468 -0.8964 5.7442 10 16 3.4410 -2.4178 4.9709 11 7 2.9670 -1.9790 3.5494 12 6 2.0400 -0.7212 -1.2493 13 1 1.6766 -1.7489 -1.2494 14 6 3.5700 -0.7217 -1.2490 15 7 1.5516 -0.0305 -2.4454 16 6 1.4208 -0.7137 -3.6251 17 1 1.6773 -1.7616 -3.6735 18 6 0.9585 -0.0590 -4.7585 19 7 0.6454 1.2180 -4.6993 20 14 0.7794 -0.9910 -6.3675 21 1 1.1935 -2.4034 -6.1701 22 1 -0.6375 -0.9472 -6.8098 23 1 1.6405 -0.3631 -7.4017 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 2.2491 -1.6319 1.1525 28 1 2.5631 0.9814 4.9490 29 1 3.4478 -0.6578 6.7781 30 1 3.9337 0.3057 -1.2488 31 1 3.9330 -1.2359 -0.3591 32 1 3.9333 -1.2351 -2.1392 33 1 1.3209 0.9106 -2.4018 34 1 0.3220 1.6753 -5.4913 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755241141.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:42 Heat of formation + Delta-G solvation = -7.188976 kcal Electronic energy + Delta-G solvation = -18099.522931 eV Core-core repulsion = 15158.575468 eV Total energy + Delta-G solvation = -2940.947463 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.54786 -39.65998 -38.15954 -35.66835 -33.65758 -32.50522 -31.08713 -30.17569 -27.53065 -25.93722 -24.46568 -22.59926 -21.60649 -21.03573 -19.41554 -19.26429 -18.69574 -17.13844 -16.65961 -16.42145 -15.94246 -15.34264 -15.28176 -15.04034 -14.65306 -14.50427 -14.21838 -14.10416 -13.49088 -13.23252 -12.95884 -12.76422 -12.63753 -12.35475 -12.24615 -12.18261 -12.09724 -11.74505 -11.51411 -11.07692 -11.00179 -10.83789 -10.23706 -9.72444 -9.02932 -7.92444 -5.21873 -0.41791 0.56264 0.75379 0.81594 1.49215 1.49543 1.59479 2.04627 2.15865 2.59109 3.41618 3.63890 3.77911 3.87817 4.00716 4.16176 4.31278 4.43519 4.54827 4.57083 4.74009 4.84835 4.87429 4.90897 5.00095 5.12567 5.27209 5.28288 5.44846 5.48605 5.56300 6.28208 6.45795 7.07121 7.34921 8.06676 8.31408 9.31167 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.043501 B = 0.003713 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.503866 B = 7538.564618 C = 7877.971577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.148 3.852 3 H 0.066 0.934 4 N -0.689 5.689 5 C 0.585 3.415 6 O -0.568 6.568 7 C 0.028 3.972 8 C -0.157 4.157 9 C -0.265 4.265 10 S 0.541 5.459 11 N -0.553 5.553 12 C 0.169 3.831 13 H 0.058 0.942 14 C -0.154 4.154 15 N -0.729 5.729 16 C -0.234 4.234 17 H 0.079 0.921 18 C -0.074 4.074 19 N -0.969 5.969 20 Si 0.971 3.029 21 H -0.264 1.264 22 H -0.295 1.295 23 H -0.296 1.296 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.415 0.585 28 H 0.169 0.831 29 H 0.224 0.776 30 H 0.035 0.965 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.373 0.627 34 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.620 -9.257 24.234 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.043 3.957 3 H 0.084 0.916 4 N -0.340 5.340 5 C 0.367 3.633 6 O -0.447 6.447 7 C -0.145 4.145 8 C -0.189 4.189 9 C -0.414 4.414 10 S 0.696 5.304 11 N -0.390 5.390 12 C 0.060 3.940 13 H 0.076 0.924 14 C -0.214 4.214 15 N -0.369 5.369 16 C -0.366 4.366 17 H 0.097 0.903 18 C -0.267 4.267 19 N -0.620 5.620 20 Si 0.801 3.199 21 H -0.189 1.189 22 H -0.222 1.222 23 H -0.224 1.224 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.252 0.748 28 H 0.186 0.814 29 H 0.241 0.759 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.205 0.795 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.841 -10.633 23.732 26.889 hybrid contribution -0.705 1.925 -1.243 2.398 sum 6.135 -8.708 22.488 24.884 Atomic orbital electron populations 1.21932 0.94726 1.02158 1.01292 1.21026 0.94448 0.96504 0.83755 0.91577 1.45738 1.65198 1.14663 1.08424 1.17689 0.77273 0.85612 0.82681 1.90780 1.52250 1.16532 1.85100 1.20957 1.07499 0.89535 0.96483 1.21470 1.03270 1.03845 0.90345 1.27632 1.05678 1.00923 1.07126 1.80220 1.48342 1.10582 0.91272 1.71969 1.21615 1.17436 1.27959 1.20519 0.92925 0.95510 0.85049 0.92353 1.22288 0.97592 1.00647 1.00849 1.42448 1.78448 1.10260 1.05785 1.19627 1.34866 0.94259 0.87868 0.90267 1.25528 1.02937 0.96826 1.01376 1.69833 1.52589 1.10260 1.29324 0.85099 0.76653 0.78267 0.79882 1.18863 1.22244 1.22387 0.93071 0.92421 0.91946 0.74838 0.81373 0.75904 0.94575 0.91563 0.93561 0.79491 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 9.33 71.98 0.67 -4.53 16 2 C 0.15 5.37 2.21 44.99 0.10 5.47 16 3 H 0.07 2.71 7.58 -2.39 -0.02 2.69 16 4 N -0.69 -21.12 4.38 -445.55 -1.95 -23.07 16 5 C 0.58 18.61 7.78 86.74 0.67 19.29 16 6 O -0.57 -21.75 16.32 -3.96 -0.06 -21.81 16 7 C 0.03 0.69 6.66 42.12 0.28 0.97 16 8 C -0.16 -3.04 9.98 21.82 0.22 -2.82 16 9 C -0.26 -2.90 11.41 67.07 0.77 -2.13 16 10 S 0.54 6.29 23.20 -56.49 -1.31 4.98 16 11 N -0.55 -11.74 10.71 -75.32 -0.81 -12.54 16 12 C 0.17 6.66 2.52 44.99 0.11 6.77 16 13 H 0.06 2.24 8.08 -2.38 -0.02 2.22 16 14 C -0.15 -5.59 9.33 71.98 0.67 -4.91 16 15 N -0.73 -36.48 4.43 -322.94 -1.43 -37.91 16 16 C -0.23 -12.81 9.93 84.03 0.83 -11.98 16 17 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 18 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 19 N -0.97 -59.57 13.06 21.65 0.28 -59.29 16 20 Si 0.97 46.09 29.55 68.60 2.03 48.11 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.06 2.39 7.44 -2.39 -0.02 2.37 16 26 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.41 11.19 7.85 -92.71 -0.73 10.46 16 28 H 0.17 3.26 7.99 -2.91 -0.02 3.24 16 29 H 0.22 0.63 8.06 -2.91 -0.02 0.61 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.99 7.44 -2.39 -0.02 1.98 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.37 20.41 7.58 -92.71 -0.70 19.71 16 34 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 Total: -1.00 -69.72 308.34 1.24 -68.48 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: -0.30 Total: 30.71 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 4.80 Total: 2.34 kcal Atomic # 7 Polarization: -128.90 SS G_CDS: -3.91 Total: -132.81 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.06 Total: -21.81 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Atomic # 16 Polarization: 6.29 SS G_CDS: -1.31 Total: 4.98 kcal Total: -69.72 1.24 -68.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755241141.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.290 kcal (2) G-P(sol) polarization free energy of solvation -69.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds