Wall clock time and date at job start Mon Mar 30 2020 00:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38345 * 119.87650 * 2 1 4 4 C 1.38003 * 120.11558 * 180.02562 * 3 2 1 5 5 C 1.39345 * 119.87950 * 0.25476 * 4 3 2 6 6 C 1.48415 * 120.11963 * 179.72174 * 5 4 3 7 7 C 1.39708 * 120.41048 * 129.99746 * 6 5 4 8 8 N 1.31912 * 121.15287 * 180.02562 * 7 6 5 9 9 C 1.31529 * 122.11860 * 0.02562 * 8 7 6 10 10 C 1.40767 * 120.66507 * 359.97250 * 9 8 7 11 11 C 1.41439 * 120.60422 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00092 * 335.75568 * 11 10 9 13 13 C 1.39937 * 119.99846 * 155.75261 * 11 10 9 14 14 N 1.30828 * 120.00109 * 343.26222 * 13 11 10 15 15 Si 1.86799 * 119.99649 * 163.25908 * 13 11 10 16 16 H 1.48503 * 109.47202 * 60.00439 * 15 13 11 17 17 H 1.48504 * 109.46732 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47422 * 299.99756 * 15 13 11 19 19 C 1.39136 * 120.41020 * 309.72883 * 6 5 4 20 20 C 1.39304 * 119.76132 * 359.45029 * 5 4 3 21 21 C 1.50707 * 120.06445 * 180.27356 * 20 5 4 22 22 O 1.42896 * 109.47158 * 180.30016 * 21 20 5 23 23 C 1.38048 * 119.87662 * 0.56975 * 20 5 4 24 24 H 1.09005 * 109.47484 * 89.99583 * 1 2 3 25 25 H 1.08997 * 109.47476 * 210.00006 * 1 2 3 26 26 H 1.09005 * 109.47248 * 329.99649 * 1 2 3 27 27 H 1.07993 * 119.93975 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.05873 * 179.97438 * 4 3 2 29 29 H 1.07998 * 119.42308 * 359.97438 * 7 6 5 30 30 H 1.07996 * 119.66587 * 179.97438 * 9 8 7 31 31 H 0.97004 * 119.99520 * 180.02562 * 14 13 11 32 32 H 1.08002 * 120.95592 * 359.96824 * 19 6 5 33 33 H 1.09000 * 109.46615 * 300.30037 * 21 20 5 34 34 H 1.09000 * 109.46705 * 60.30271 * 21 20 5 35 35 H 0.96699 * 113.99638 * 180.02562 * 22 21 20 36 36 H 1.08002 * 119.94015 * 179.72496 * 23 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1996 0.0000 4 6 3.5761 1.2053 -0.0005 5 6 4.2754 0.0000 -0.0064 6 6 5.7595 0.0000 -0.0133 7 6 6.4709 -0.7765 0.9047 8 7 7.7900 -0.7871 0.9121 9 6 8.4998 -0.0743 0.0646 10 6 7.8678 0.7378 -0.8959 11 6 8.6323 1.5033 -1.8069 12 1 9.6427 1.7907 -1.5559 13 6 8.0796 1.8884 -3.0335 14 7 7.0086 1.2883 -3.4855 15 14 8.8710 3.2594 -4.0252 16 1 10.2673 2.8833 -4.3633 17 1 8.1000 3.4738 -5.2762 18 1 8.8751 4.5103 -3.2251 19 6 6.4595 0.7690 -0.9377 20 6 3.5764 -1.2049 -0.0002 21 6 4.3257 -2.5125 -0.0003 22 8 3.3937 -3.5956 -0.0003 23 6 2.1959 -1.1991 -0.0001 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6532 2.1331 -0.0004 28 1 4.1132 2.1423 -0.0010 29 1 5.9315 -1.3779 1.6215 30 1 9.5783 -0.1125 0.1062 31 1 6.6257 1.5551 -4.3360 32 1 5.9386 1.3761 -1.6633 33 1 4.9522 -2.5721 -0.8903 34 1 4.9522 -2.5722 0.8897 35 1 3.8068 -4.4699 0.0000 36 1 1.6529 -2.1327 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244489708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:20 Heat of formation + Delta-G solvation = -31.245515 kcal Electronic energy + Delta-G solvation = -19662.731248 eV Core-core repulsion = 16688.837008 eV Total energy + Delta-G solvation = -2973.894240 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.01814 -39.66462 -37.63227 -36.01958 -34.78918 -32.59717 -32.10053 -31.37642 -27.86936 -27.38593 -26.87856 -24.00316 -23.20429 -22.48513 -21.18893 -19.29337 -18.31131 -17.66451 -17.14574 -16.90703 -16.41280 -15.95938 -15.90653 -15.59429 -14.93599 -14.66423 -14.47561 -14.26193 -14.05886 -13.58784 -13.35220 -13.23015 -13.07345 -12.93700 -12.88858 -12.69334 -12.32156 -12.09195 -11.87426 -11.58122 -11.25271 -11.16655 -10.30923 -10.12680 -9.73272 -9.64294 -8.95986 -8.72794 -6.49472 0.09834 0.46745 0.85594 1.06123 1.37728 1.49000 1.52804 2.16074 2.64297 2.82506 3.24440 3.63183 3.82121 3.91276 4.05841 4.08563 4.13606 4.37783 4.48444 4.51208 4.61002 4.71119 4.77455 4.80292 4.88225 4.94623 5.01058 5.13022 5.19143 5.24223 5.30772 5.51538 5.64931 5.67790 5.81801 5.86875 5.98177 6.11542 6.44706 6.71797 6.73011 6.83445 7.63929 8.20373 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.018702 B = 0.005832 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.774276 B = 4800.287036 C = 5646.901455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.097 4.097 3 C -0.120 4.120 4 C -0.119 4.119 5 C -0.045 4.045 6 C -0.082 4.082 7 C -0.033 4.033 8 N -0.476 5.476 9 C -0.039 4.039 10 C 0.040 3.960 11 C -0.479 4.479 12 H 0.089 0.911 13 C 0.036 3.964 14 N -0.818 5.818 15 Si 0.987 3.013 16 H -0.256 1.256 17 H -0.268 1.268 18 H -0.258 1.258 19 C -0.136 4.136 20 C -0.093 4.093 21 C 0.125 3.875 22 O -0.576 6.576 23 C -0.105 4.105 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.148 0.852 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.292 0.708 32 H 0.116 0.884 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.400 0.600 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.433 -1.354 2.040 10.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.097 4.097 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.046 4.046 6 C -0.085 4.085 7 C -0.191 4.191 8 N -0.183 5.183 9 C -0.200 4.200 10 C 0.035 3.965 11 C -0.508 4.508 12 H 0.107 0.893 13 C -0.180 4.180 14 N -0.442 5.442 15 Si 0.807 3.193 16 H -0.180 1.180 17 H -0.193 1.193 18 H -0.183 1.183 19 C -0.162 4.162 20 C -0.093 4.093 21 C 0.048 3.952 22 O -0.385 6.385 23 C -0.123 4.123 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.166 0.834 28 H 0.133 0.867 29 H 0.160 0.840 30 H 0.154 0.846 31 H 0.103 0.897 32 H 0.134 0.866 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.250 0.750 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.592 -1.421 2.449 10.964 hybrid contribution 0.795 0.552 -1.201 1.542 sum -9.797 -0.870 1.248 9.914 Atomic orbital electron populations 1.20803 0.88477 1.03846 1.03118 1.20337 0.97945 0.92280 0.99141 1.21217 0.92925 0.98930 1.00718 1.21257 0.95108 0.96667 1.00644 1.18661 0.91444 0.93484 1.01044 1.19663 0.92399 0.99172 0.97232 1.22151 0.89488 1.05205 1.02267 1.66957 1.08457 1.19803 1.23099 1.22701 0.98776 0.99816 0.98683 1.18795 0.93133 0.91418 0.93104 1.19843 1.01251 1.29369 1.00362 0.89342 1.26853 0.94792 0.97853 0.98521 1.69842 1.19636 1.35422 1.19339 0.85166 0.79272 0.77798 0.77069 1.17999 1.19271 1.18271 1.21752 0.94060 1.01262 0.99152 1.19855 0.94749 0.93109 1.01621 1.20845 0.89680 0.84413 1.00273 1.86314 1.36530 1.17852 1.97766 1.20926 0.92631 0.98688 1.00079 0.90380 0.90631 0.90054 0.83443 0.86658 0.83981 0.84578 0.89730 0.86589 0.94199 0.91256 0.74993 0.84317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 10.01 71.24 0.71 -1.29 16 2 C -0.10 -2.71 5.88 -19.83 -0.12 -2.83 16 3 C -0.12 -3.57 9.68 22.24 0.22 -3.35 16 4 C -0.12 -4.38 9.54 22.48 0.21 -4.17 16 5 C -0.05 -1.87 5.49 -20.04 -0.11 -1.98 16 6 C -0.08 -3.88 5.10 -19.99 -0.10 -3.99 16 7 C -0.03 -1.54 9.39 85.04 0.80 -0.75 16 8 N -0.48 -23.53 10.32 -192.78 -1.99 -25.52 16 9 C -0.04 -2.00 10.96 85.36 0.94 -1.07 16 10 C 0.04 2.13 5.59 -21.21 -0.12 2.01 16 11 C -0.48 -24.81 9.09 23.47 0.21 -24.60 16 12 H 0.09 4.32 7.90 -2.91 -0.02 4.30 16 13 C 0.04 1.75 5.19 85.25 0.44 2.19 16 14 N -0.82 -41.46 10.90 21.82 0.24 -41.22 16 15 Si 0.99 36.39 29.59 68.60 2.03 38.42 16 16 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 17 H -0.27 -9.42 7.11 99.48 0.71 -8.72 16 18 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 19 C -0.14 -7.13 8.30 23.14 0.19 -6.94 16 20 C -0.09 -3.44 5.87 -19.65 -0.12 -3.55 16 21 C 0.13 4.24 6.00 71.24 0.43 4.67 16 22 O -0.58 -15.87 12.14 -148.98 -1.81 -17.68 16 23 C -0.11 -3.35 9.02 22.24 0.20 -3.15 16 24 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 26 H 0.08 1.26 8.08 -2.38 -0.02 1.24 16 27 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 28 H 0.12 4.29 8.05 -2.91 -0.02 4.26 16 29 H 0.14 5.83 6.18 -2.91 -0.02 5.81 16 30 H 0.14 6.43 8.06 -2.91 -0.02 6.41 16 31 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 32 H 0.12 6.31 6.19 -2.91 -0.02 6.29 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 2.31 5.52 -2.39 -0.01 2.30 16 35 H 0.40 7.01 9.12 -74.06 -0.68 6.33 16 36 H 0.14 4.04 7.00 -2.91 -0.02 4.02 16 Total: -1.00 -62.15 306.21 2.69 -59.45 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: 0.44 Total: 35.34 kcal Atomic # 6 Polarization: -52.58 SS G_CDS: 3.79 Total: -48.79 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -1.75 Total: -66.74 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -1.81 Total: -17.68 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -62.15 2.69 -59.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244489708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.209 kcal (2) G-P(sol) polarization free energy of solvation -62.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds