Wall clock time and date at job start Mon Mar 30 2020 00:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 119.99971 * 2 1 4 4 C 1.50703 * 109.46873 * 270.00069 * 3 2 1 5 5 H 1.08002 * 120.00158 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00092 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99814 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 119.99907 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47300 * 90.00099 * 8 6 4 10 10 H 1.48502 * 109.47059 * 209.99895 * 8 6 4 11 11 H 1.48501 * 109.47391 * 329.99724 * 8 6 4 12 12 C 1.34781 * 120.00158 * 179.97438 * 2 1 3 13 13 O 1.21554 * 119.99875 * 184.87227 * 12 2 1 14 14 C 1.47775 * 119.99624 * 4.87034 * 12 2 1 15 15 C 1.40655 * 119.74336 * 140.39664 * 14 12 2 16 16 C 1.35721 * 120.84564 * 180.29730 * 15 14 12 17 17 C 1.40704 * 120.02025 * 359.71126 * 16 15 14 18 18 C 1.40483 * 121.04768 * 180.02562 * 17 16 15 19 19 C 1.36137 * 119.72248 * 180.02562 * 18 17 16 20 20 C 1.39359 * 121.01332 * 359.96736 * 19 18 17 21 21 C 1.36092 * 120.95278 * 0.02562 * 20 19 18 22 22 C 1.40655 * 119.66017 * 0.02562 * 21 20 19 23 23 C 1.38489 * 119.75114 * 320.14804 * 14 12 2 24 24 H 1.09005 * 109.47062 * 266.06867 * 1 2 3 25 25 H 1.08992 * 109.47184 * 26.06639 * 1 2 3 26 26 H 1.08998 * 109.47022 * 146.07110 * 1 2 3 27 27 H 1.08997 * 109.47027 * 29.99590 * 3 2 1 28 28 H 1.08990 * 109.47223 * 150.00246 * 3 2 1 29 29 H 0.97001 * 120.00288 * 180.02562 * 7 6 4 30 30 H 1.08001 * 119.57840 * 0.03443 * 15 14 12 31 31 H 1.07997 * 119.99267 * 179.72610 * 16 15 14 32 32 H 1.08006 * 120.13751 * 0.05434 * 18 17 16 33 33 H 1.08006 * 119.49258 * 179.97438 * 19 18 17 34 34 H 1.07999 * 119.52863 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.17023 * 180.02562 * 21 20 19 36 36 H 1.07996 * 120.26991 * 0.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0981 1.0957 -2.2418 6 6 3.1269 2.8775 -1.6729 7 7 3.5542 3.6176 -0.6733 8 14 3.4375 3.4169 -3.4341 9 1 2.3077 4.2606 -3.8999 10 1 4.6982 4.1992 -3.4971 11 1 3.5537 2.2200 -4.3053 12 6 2.1390 -1.1672 0.0005 13 8 3.3512 -1.1690 0.0899 14 6 1.4040 -2.4447 -0.1076 15 6 1.9276 -3.4866 -0.8942 16 6 1.2684 -4.6669 -1.0139 17 6 0.0479 -4.8629 -0.3419 18 6 -0.6522 -6.0760 -0.4502 19 6 -1.8312 -6.2363 0.2114 20 6 -2.3578 -5.2138 0.9983 21 6 -1.7083 -4.0248 1.1276 22 6 -0.4881 -3.8219 0.4581 23 6 0.2077 -2.6088 0.5705 24 1 -0.3633 -0.0705 1.0253 25 1 -0.3633 0.9231 -0.4515 26 1 -0.3633 -0.8527 -0.5736 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5137 29 1 4.0310 4.4435 -0.8506 30 1 2.8641 -3.3440 -1.4129 31 1 1.6809 -5.4560 -1.6251 32 1 -0.2566 -6.8782 -1.0555 33 1 -2.3666 -7.1703 0.1251 34 1 -3.2948 -5.3670 1.5130 35 1 -2.1277 -3.2412 1.7410 36 1 -0.1890 -1.8076 1.1763 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:10 Heat of formation + Delta-G solvation = 15.225462 kcal Electronic energy + Delta-G solvation = -19458.524889 eV Core-core repulsion = 16486.645781 eV Total energy + Delta-G solvation = -2971.879107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.52634 -38.86771 -36.08326 -34.95845 -33.01656 -32.41606 -30.44930 -29.46489 -27.60555 -26.09685 -24.13441 -23.30110 -22.30361 -21.94186 -19.26090 -17.52580 -16.88283 -16.59185 -16.52568 -15.39134 -15.17559 -14.80802 -14.39369 -14.29218 -13.79643 -13.53350 -13.38640 -13.24558 -12.69196 -12.43651 -12.19840 -12.06901 -11.66605 -11.30544 -11.23783 -11.14096 -10.92216 -10.79067 -10.58626 -10.17949 -9.98457 -9.65290 -9.06413 -8.60445 -8.45037 -7.91156 -7.69044 -6.05909 -4.11084 0.41437 0.89102 1.96586 2.76519 3.29645 3.36176 3.40121 3.56169 3.90057 4.16726 4.43470 4.51593 4.73627 4.77894 4.94089 5.02339 5.13703 5.27543 5.29349 5.33422 5.40421 5.61712 5.70212 5.84122 5.87093 5.97534 6.11867 6.18438 6.20766 6.34492 6.49554 6.51641 6.74269 6.90925 7.04723 7.41667 7.49635 7.90323 8.20635 8.33951 8.85903 9.02080 9.54104 11.02201 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033417 B = 0.004188 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.703838 B = 6683.439393 C = 6909.492360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.593 5.593 3 C 0.244 3.756 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.544 3.456 13 O -0.535 6.535 14 C -0.106 4.106 15 C -0.067 4.067 16 C -0.118 4.118 17 C -0.042 4.042 18 C -0.109 4.109 19 C -0.117 4.117 20 C -0.125 4.125 21 C -0.098 4.098 22 C -0.059 4.059 23 C -0.082 4.082 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.047 0.953 29 H 0.264 0.736 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.750 -17.260 2.279 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.324 5.324 3 C 0.125 3.875 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.331 3.669 13 O -0.413 6.413 14 C -0.110 4.110 15 C -0.086 4.086 16 C -0.136 4.136 17 C -0.042 4.042 18 C -0.127 4.127 19 C -0.135 4.135 20 C -0.143 4.143 21 C -0.116 4.116 22 C -0.059 4.059 23 C -0.101 4.101 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.000 -17.031 2.373 20.968 hybrid contribution 0.102 0.420 -0.997 1.087 sum -11.899 -16.611 1.376 20.479 Atomic orbital electron populations 1.21980 0.81559 1.03253 0.99958 1.48095 1.06228 1.07639 1.70438 1.19362 0.92736 0.77737 0.97678 1.21440 1.36702 1.06440 0.92215 0.92387 1.24935 0.95261 0.96342 0.97517 1.69931 1.38283 1.14307 1.30765 0.86480 0.77703 0.78613 0.84549 1.20597 1.21033 1.19867 1.18198 0.87225 0.83392 0.78132 1.90755 1.13483 1.87019 1.50081 1.20235 0.95493 0.95718 0.99520 1.20876 0.99488 0.91737 0.96458 1.20901 0.94552 0.97762 1.00371 1.18187 0.95101 0.93860 0.97033 1.21028 0.95408 0.96368 0.99917 1.20846 0.96177 0.99057 0.97390 1.20810 1.00216 0.93691 0.99600 1.21081 0.94031 0.97774 0.98675 1.18037 0.95594 0.93848 0.98403 1.21878 0.93352 0.96543 0.98280 0.93515 0.90559 0.91783 0.94742 0.93519 0.92658 0.84972 0.85232 0.85651 0.86167 0.86072 0.85424 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 8.88 59.85 0.53 1.78 16 2 N -0.59 -12.95 2.86 -184.11 -0.53 -13.48 16 3 C 0.24 6.45 5.18 -5.19 -0.03 6.43 16 4 C -0.53 -15.13 9.39 -34.44 -0.32 -15.46 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.54 11.99 7.33 -12.36 -0.09 11.90 16 13 O -0.54 -14.03 16.45 5.32 0.09 -13.94 16 14 C -0.11 -1.85 5.23 -104.99 -0.55 -2.40 16 15 C -0.07 -1.05 9.52 -39.57 -0.38 -1.43 16 16 C -0.12 -1.51 9.73 -39.55 -0.38 -1.90 16 17 C -0.04 -0.52 5.75 -106.76 -0.61 -1.14 16 18 C -0.11 -1.10 9.76 -39.49 -0.39 -1.49 16 19 C -0.12 -1.05 9.95 -39.92 -0.40 -1.45 16 20 C -0.13 -1.14 9.95 -39.94 -0.40 -1.54 16 21 C -0.10 -1.02 9.77 -39.44 -0.39 -1.40 16 22 C -0.06 -0.76 5.74 -106.85 -0.61 -1.37 16 23 C -0.08 -1.17 7.29 -38.72 -0.28 -1.46 16 24 H 0.05 0.63 6.92 -51.93 -0.36 0.27 16 25 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 26 H 0.06 0.94 5.80 -51.93 -0.30 0.64 16 27 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 28 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.13 2.10 8.04 -52.49 -0.42 1.68 16 31 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.14 1.80 5.33 -52.49 -0.28 1.52 16 LS Contribution 308.34 15.07 4.65 4.65 Total: -1.00 -33.72 308.34 -8.71 -42.43 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.24 Total: -1.41 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -4.39 Total: -9.24 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.21 Total: -39.38 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.72 -8.71 -42.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.651 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds