Wall clock time and date at job start Mon Mar 30 2020 00:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 119.99971 * 2 1 4 4 C 1.50703 * 109.46873 * 270.00069 * 3 2 1 5 5 H 1.08002 * 120.00158 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00092 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99814 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 119.99907 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47300 * 90.00099 * 8 6 4 10 10 H 1.48502 * 109.47059 * 209.99895 * 8 6 4 11 11 H 1.48501 * 109.47391 * 329.99724 * 8 6 4 12 12 C 1.34781 * 120.00158 * 179.97438 * 2 1 3 13 13 O 1.21554 * 119.99875 * 184.87227 * 12 2 1 14 14 C 1.47775 * 119.99624 * 4.87034 * 12 2 1 15 15 C 1.40655 * 119.74336 * 140.39664 * 14 12 2 16 16 C 1.35721 * 120.84564 * 180.29730 * 15 14 12 17 17 C 1.40704 * 120.02025 * 359.71126 * 16 15 14 18 18 C 1.40483 * 121.04768 * 180.02562 * 17 16 15 19 19 C 1.36137 * 119.72248 * 180.02562 * 18 17 16 20 20 C 1.39359 * 121.01332 * 359.96736 * 19 18 17 21 21 C 1.36092 * 120.95278 * 0.02562 * 20 19 18 22 22 C 1.40655 * 119.66017 * 0.02562 * 21 20 19 23 23 C 1.38489 * 119.75114 * 320.14804 * 14 12 2 24 24 H 1.09005 * 109.47062 * 266.06867 * 1 2 3 25 25 H 1.08992 * 109.47184 * 26.06639 * 1 2 3 26 26 H 1.08998 * 109.47022 * 146.07110 * 1 2 3 27 27 H 1.08997 * 109.47027 * 29.99590 * 3 2 1 28 28 H 1.08990 * 109.47223 * 150.00246 * 3 2 1 29 29 H 0.97001 * 120.00288 * 180.02562 * 7 6 4 30 30 H 1.08001 * 119.57840 * 0.03443 * 15 14 12 31 31 H 1.07997 * 119.99267 * 179.72610 * 16 15 14 32 32 H 1.08006 * 120.13751 * 0.05434 * 18 17 16 33 33 H 1.08006 * 119.49258 * 179.97438 * 19 18 17 34 34 H 1.07999 * 119.52863 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.17023 * 180.02562 * 21 20 19 36 36 H 1.07996 * 120.26991 * 0.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0981 1.0957 -2.2418 6 6 3.1269 2.8775 -1.6729 7 7 3.5542 3.6176 -0.6733 8 14 3.4375 3.4169 -3.4341 9 1 2.3077 4.2606 -3.8999 10 1 4.6982 4.1992 -3.4971 11 1 3.5537 2.2200 -4.3053 12 6 2.1390 -1.1672 0.0005 13 8 3.3512 -1.1690 0.0899 14 6 1.4040 -2.4447 -0.1076 15 6 1.9276 -3.4866 -0.8942 16 6 1.2684 -4.6669 -1.0139 17 6 0.0479 -4.8629 -0.3419 18 6 -0.6522 -6.0760 -0.4502 19 6 -1.8312 -6.2363 0.2114 20 6 -2.3578 -5.2138 0.9983 21 6 -1.7083 -4.0248 1.1276 22 6 -0.4881 -3.8219 0.4581 23 6 0.2077 -2.6088 0.5705 24 1 -0.3633 -0.0705 1.0253 25 1 -0.3633 0.9231 -0.4515 26 1 -0.3633 -0.8527 -0.5736 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5137 29 1 4.0310 4.4435 -0.8506 30 1 2.8641 -3.3440 -1.4129 31 1 1.6809 -5.4560 -1.6251 32 1 -0.2566 -6.8782 -1.0555 33 1 -2.3666 -7.1703 0.1251 34 1 -3.2948 -5.3670 1.5130 35 1 -2.1277 -3.2412 1.7410 36 1 -0.1890 -1.8076 1.1763 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:10 Heat of formation + Delta-G solvation = -5.009180 kcal Electronic energy + Delta-G solvation = -19459.402328 eV Core-core repulsion = 16486.645781 eV Total energy + Delta-G solvation = -2972.756547 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.64275 -40.31633 -37.13113 -36.76692 -34.84850 -33.67871 -31.53269 -30.58197 -29.33689 -27.65552 -25.72525 -24.38130 -23.73001 -22.85104 -20.75642 -18.73856 -18.68070 -17.93139 -17.83640 -17.05514 -16.45701 -16.20496 -15.98454 -15.49457 -14.98320 -14.63216 -14.46300 -14.33385 -14.13438 -13.97711 -13.78072 -13.51809 -13.15637 -12.93218 -12.72335 -12.58178 -12.25599 -12.17603 -12.13991 -11.77269 -11.70576 -10.93688 -10.75565 -10.66967 -9.64677 -9.47425 -8.83104 -8.25900 -6.41465 -0.53830 -0.08335 1.04902 1.34891 1.38156 1.48461 1.60961 2.08774 2.36233 2.42565 3.03572 3.16162 3.50500 3.68065 3.89806 4.02269 4.13189 4.25918 4.32196 4.38032 4.45206 4.55063 4.56918 4.79073 4.88652 4.93438 4.94832 5.06865 5.16854 5.24140 5.30046 5.41586 5.50031 5.61978 5.63356 5.76486 5.83088 6.00895 6.08197 6.60497 6.67840 7.19769 7.34960 8.81546 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033417 B = 0.004188 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.703838 B = 6683.439393 C = 6909.492360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.600 5.600 3 C 0.258 3.742 4 C -0.549 4.549 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.970 3.030 9 H -0.261 1.261 10 H -0.278 1.278 11 H -0.274 1.274 12 C 0.537 3.463 13 O -0.596 6.596 14 C -0.137 4.137 15 C -0.097 4.097 16 C -0.103 4.103 17 C -0.054 4.054 18 C -0.118 4.118 19 C -0.107 4.107 20 C -0.117 4.117 21 C -0.108 4.108 22 C -0.074 4.074 23 C -0.067 4.067 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.031 0.969 28 H 0.000 1.000 29 H 0.269 0.731 30 H 0.113 0.887 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.101 -19.634 1.718 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.329 5.329 3 C 0.137 3.863 4 C -0.587 4.587 5 H 0.070 0.930 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.794 3.206 9 H -0.186 1.186 10 H -0.204 1.204 11 H -0.199 1.199 12 C 0.327 3.673 13 O -0.479 6.479 14 C -0.140 4.140 15 C -0.116 4.116 16 C -0.120 4.120 17 C -0.055 4.055 18 C -0.135 4.135 19 C -0.125 4.125 20 C -0.135 4.135 21 C -0.125 4.125 22 C -0.075 4.075 23 C -0.086 4.086 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.049 0.951 28 H 0.019 0.981 29 H 0.078 0.922 30 H 0.131 0.869 31 H 0.176 0.824 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.166 0.834 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.411 -19.414 1.817 24.854 hybrid contribution 0.968 0.974 -0.727 1.554 sum -14.442 -18.440 1.090 23.448 Atomic orbital electron populations 1.22264 0.78054 1.03988 1.02540 1.48092 1.08423 1.06188 1.70245 1.18855 0.91290 0.79830 0.96356 1.21683 1.37373 1.06846 0.92824 0.93042 1.25870 0.94641 0.96245 1.02225 1.70045 1.38670 1.14760 1.33107 0.85378 0.78252 0.78196 0.78764 1.18561 1.20358 1.19925 1.19012 0.86872 0.84910 0.76513 1.90692 1.16265 1.88085 1.52809 1.19834 0.97185 0.93788 1.03203 1.20795 0.99793 0.93034 0.97983 1.21157 0.94306 0.96902 0.99652 1.18505 0.95093 0.95031 0.96832 1.21330 0.95782 0.95879 1.00554 1.21333 0.95441 1.00190 0.95536 1.21275 1.00888 0.92793 0.98554 1.21352 0.93130 0.99272 0.98774 1.18256 0.96671 0.93280 0.99246 1.21972 0.91903 0.97707 0.96987 0.90044 0.90866 0.89782 0.95117 0.98139 0.92223 0.86866 0.82406 0.83230 0.82883 0.82929 0.83400 0.82870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.38 8.88 127.77 1.13 3.51 16 2 N -0.60 -27.53 2.86 -854.66 -2.44 -29.97 16 3 C 0.26 14.50 5.18 85.63 0.44 14.94 16 4 C -0.55 -32.73 9.39 25.60 0.24 -32.49 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.56 5.46 84.66 0.46 1.02 16 7 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 8 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 12 C 0.54 25.34 7.33 86.77 0.64 25.98 16 13 O -0.60 -34.10 16.45 -3.89 -0.06 -34.16 16 14 C -0.14 -4.95 5.23 -20.11 -0.11 -5.06 16 15 C -0.10 -3.20 9.52 22.28 0.21 -2.99 16 16 C -0.10 -2.53 9.73 22.29 0.22 -2.32 16 17 C -0.05 -1.24 5.75 -21.25 -0.12 -1.36 16 18 C -0.12 -1.89 9.76 22.33 0.22 -1.67 16 19 C -0.11 -1.36 9.95 22.05 0.22 -1.14 16 20 C -0.12 -1.53 9.95 22.04 0.22 -1.31 16 21 C -0.11 -1.83 9.77 22.36 0.22 -1.61 16 22 C -0.07 -1.75 5.74 -21.31 -0.12 -1.88 16 23 C -0.07 -1.88 7.29 22.83 0.17 -1.71 16 24 H 0.08 2.07 6.92 -2.38 -0.02 2.05 16 25 H 0.07 2.41 8.04 -2.39 -0.02 2.39 16 26 H 0.08 2.40 5.80 -2.39 -0.01 2.39 16 27 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16 28 H 0.00 0.03 7.36 -2.39 -0.02 0.01 16 29 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.11 3.99 8.04 -2.91 -0.02 3.96 16 31 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 33 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 34 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.15 3.69 5.33 -2.91 -0.02 3.67 16 Total: -1.00 -78.83 308.34 4.93 -73.90 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.08 Total: 7.15 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 4.04 Total: -8.06 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -2.16 Total: -86.54 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.06 Total: -34.16 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -78.83 4.93 -73.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.895 kcal (2) G-P(sol) polarization free energy of solvation -78.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds