Wall clock time and date at job start Mon Mar 30 2020 01:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30110 * 124.95352 * 2 1 4 4 C 1.35776 * 109.64342 * 180.02562 * 3 2 1 5 5 C 1.39742 * 133.60260 * 180.02562 * 4 3 2 6 6 C 1.36602 * 119.88886 * 180.02562 * 5 4 3 7 7 C 1.38774 * 120.66869 * 359.96303 * 6 5 4 8 8 C 1.37848 * 120.45154 * 359.97438 * 7 6 5 9 9 C 1.38835 * 119.69325 * 0.02562 * 8 7 6 10 10 N 1.36036 * 124.94652 * 180.28341 * 2 1 3 11 11 C 1.46497 * 126.35300 * 0.07781 * 10 2 1 12 12 C 1.53007 * 109.47012 * 270.08846 * 11 10 2 13 13 H 1.08996 * 109.47062 * 54.99896 * 12 11 10 14 14 C 1.47192 * 109.47031 * 294.99634 * 12 11 10 15 15 N 4.71372 * 121.62014 * 139.68079 * 2 1 3 16 16 C 1.53006 * 109.47101 * 174.99957 * 12 11 10 17 17 C 1.50701 * 109.46808 * 185.00144 * 16 12 11 18 18 H 1.07993 * 120.00021 * 359.97438 * 17 16 12 19 19 C 1.37875 * 119.99575 * 179.97438 * 17 16 12 20 20 N 1.31518 * 120.00287 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46805 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46937 * 120.00100 * 21 19 17 24 24 H 1.48496 * 109.47450 * 240.00297 * 21 19 17 25 25 H 1.08998 * 109.46765 * 90.02070 * 1 2 3 26 26 H 1.08994 * 109.47444 * 210.02104 * 1 2 3 27 27 H 1.09003 * 109.46910 * 330.02597 * 1 2 3 28 28 H 1.08008 * 120.05201 * 359.96629 * 5 4 3 29 29 H 1.08000 * 119.66422 * 179.97438 * 6 5 4 30 30 H 1.08004 * 119.77052 * 180.02562 * 7 6 5 31 31 H 1.07999 * 120.15949 * 180.02562 * 8 7 6 32 32 H 1.09000 * 109.47223 * 30.08336 * 11 10 2 33 33 H 1.08997 * 109.47471 * 150.08809 * 11 10 2 34 34 H 1.09006 * 109.46863 * 304.99975 * 16 12 11 35 35 H 1.08996 * 109.47374 * 64.99895 * 16 12 11 36 36 H 0.97003 * 120.00091 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2525 1.0664 0.0000 4 6 3.5621 0.7079 -0.0006 5 6 4.7588 1.4294 -0.0004 6 6 5.9533 0.7667 -0.0017 7 6 5.9931 -0.6205 -0.0024 8 6 4.8253 -1.3529 -0.0013 9 6 3.6019 -0.6966 0.0000 10 7 2.2863 -1.1151 -0.0055 11 6 1.8166 -2.5027 -0.0140 12 6 1.6494 -2.9933 1.4256 13 1 0.9900 -2.3145 1.9665 14 6 2.9639 -3.0312 2.0868 15 7 3.9784 -3.0604 2.5972 16 6 1.0414 -4.3973 1.4186 17 6 0.7629 -4.8312 2.8347 18 1 0.9967 -4.1717 3.6573 19 6 0.2098 -6.0701 3.0799 20 7 -0.0743 -6.8734 2.0780 21 14 -0.1347 -6.6083 4.8352 22 1 0.2729 -5.5308 5.7723 23 1 -1.5862 -6.8790 4.9940 24 1 0.6346 -7.8426 5.1346 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3634 -0.8897 0.5141 27 1 -0.3633 0.8902 0.5134 28 1 4.7393 2.5094 -0.0002 29 1 6.8760 1.3280 -0.0019 30 1 6.9456 -1.1296 -0.0030 31 1 4.8618 -2.4323 -0.0015 32 1 0.8584 -2.5588 -0.5305 33 1 2.5444 -3.1295 -0.5292 34 1 0.1103 -4.3872 0.8519 35 1 1.7406 -5.0938 0.9560 36 1 -0.4632 -7.7452 2.2506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032514632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:58 Heat of formation + Delta-G solvation = 83.657515 kcal Electronic energy + Delta-G solvation = -19697.562351 eV Core-core repulsion = 16760.943432 eV Total energy + Delta-G solvation = -2936.618920 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.09123 -37.57772 -36.84020 -34.50644 -33.41117 -31.78171 -31.22804 -29.96927 -27.48069 -27.08743 -24.25264 -22.11374 -21.99796 -21.87323 -19.96766 -17.40949 -17.26425 -16.72181 -16.28310 -15.54206 -15.24664 -14.70103 -14.14493 -14.02281 -13.63041 -13.35926 -13.13117 -12.96912 -12.71453 -12.59757 -12.23876 -11.92439 -11.87666 -11.73304 -11.40534 -11.28675 -11.20920 -10.96112 -10.70741 -10.54131 -10.27304 -9.84694 -9.74109 -9.40972 -8.59467 -8.15367 -7.93901 -6.23602 -4.27778 1.07764 1.63996 2.69206 2.87271 3.20187 3.29200 3.33665 3.41327 3.51098 4.00662 4.22867 4.29621 4.44235 4.55417 4.97321 5.08607 5.10938 5.14814 5.15846 5.30878 5.42669 5.46286 5.52495 5.54394 5.72329 5.80691 5.86523 6.03330 6.16775 6.27212 6.58955 6.61464 6.65466 6.99137 7.18498 7.25424 7.28504 7.70885 8.01685 8.05015 8.24969 8.76282 9.39133 10.87038 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025521 B = 0.004942 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.884358 B = 5664.466506 C = 6262.386257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.286 3.714 3 N -0.502 5.502 4 C 0.047 3.953 5 C -0.073 4.073 6 C -0.130 4.130 7 C -0.109 4.109 8 C -0.096 4.096 9 C 0.050 3.950 10 N -0.486 5.486 11 C 0.113 3.887 12 C -0.008 4.008 13 H 0.107 0.893 14 C 0.231 3.769 15 N -0.452 5.452 16 C 0.034 3.966 17 C -0.529 4.529 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.283 1.283 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.029 0.971 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 11.802 -7.788 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.021 3.979 3 N -0.223 5.223 4 C -0.072 4.072 5 C -0.092 4.092 6 C -0.150 4.150 7 C -0.129 4.129 8 C -0.117 4.117 9 C -0.059 4.059 10 N -0.175 5.175 11 C -0.009 4.009 12 C -0.030 4.030 13 H 0.124 0.876 14 C -0.086 4.086 15 N -0.128 5.128 16 C -0.004 4.004 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.209 1.209 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.113 0.887 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.114 0.886 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.261 12.283 -7.064 14.796 hybrid contribution -0.299 -1.426 0.891 1.708 sum 3.962 10.857 -6.173 13.102 Atomic orbital electron populations 1.20447 0.84204 1.05159 1.04190 1.23662 0.95830 0.80673 0.97695 1.70393 1.00800 1.27407 1.23677 1.19039 0.92107 0.90349 1.05682 1.19931 0.89286 0.99418 1.00576 1.20575 0.97287 0.94295 1.02834 1.20812 0.97164 0.93932 1.00969 1.19996 0.89311 0.99481 1.02909 1.18867 0.85501 0.95109 1.06421 1.45513 1.04527 1.07661 1.59831 1.22132 1.02750 0.78153 0.97904 1.19663 0.87297 1.04336 0.91708 0.87554 1.28915 0.94294 0.91934 0.93501 1.81039 1.12770 1.10027 1.08994 1.19184 0.96445 0.85824 0.98972 1.21091 1.42251 1.01612 0.91793 0.92432 1.24930 0.95125 0.96389 0.97290 1.69932 1.42788 1.09357 1.30689 0.86517 0.78047 0.78808 0.84642 1.19663 1.20690 1.20856 0.89402 0.89335 0.88723 0.85761 0.85727 0.85648 0.86431 0.86735 0.88593 0.93914 0.95253 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 9.95 36.01 0.36 -0.43 16 2 C 0.29 4.06 7.85 -154.82 -1.22 2.85 16 3 N -0.50 -8.24 11.27 -8.23 -0.09 -8.33 16 4 C 0.05 0.77 7.23 -84.70 -0.61 0.16 16 5 C -0.07 -1.02 10.05 -39.61 -0.40 -1.42 16 6 C -0.13 -1.62 9.96 -39.97 -0.40 -2.02 16 7 C -0.11 -1.46 10.03 -39.53 -0.40 -1.86 16 8 C -0.10 -1.48 9.32 -39.50 -0.37 -1.85 16 9 C 0.05 0.81 6.23 -83.99 -0.52 0.29 16 10 N -0.49 -7.18 2.66 -111.15 -0.30 -7.48 16 11 C 0.11 1.53 5.13 -4.04 -0.02 1.51 16 12 C -0.01 -0.13 2.42 -93.40 -0.23 -0.35 16 13 H 0.11 1.74 8.14 -51.93 -0.42 1.31 16 14 C 0.23 4.61 12.43 -20.76 -0.26 4.35 16 15 N -0.45 -9.78 18.41 42.15 0.78 -9.00 16 16 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 17 C -0.53 -13.37 8.60 -34.44 -0.30 -13.66 16 18 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 19 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -24.23 13.29 55.43 0.74 -23.50 16 21 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 0.78 7.67 -51.93 -0.40 0.38 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 30 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.12 1.82 8.00 -52.49 -0.42 1.40 16 32 H 0.11 1.21 7.63 -51.93 -0.40 0.81 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 317.79 15.07 4.79 4.79 Total: -1.00 -31.43 317.79 -8.24 -39.67 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -4.55 Total: -1.51 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -4.58 Total: -10.22 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 1.12 Total: -48.31 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.43 -8.24 -39.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032514632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.324 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds