Wall clock time and date at job start Mon Mar 30 2020 01:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30110 * 124.95352 * 2 1 4 4 C 1.35776 * 109.64342 * 180.02562 * 3 2 1 5 5 C 1.39742 * 133.60260 * 180.02562 * 4 3 2 6 6 C 1.36602 * 119.88886 * 180.02562 * 5 4 3 7 7 C 1.38774 * 120.66869 * 359.96303 * 6 5 4 8 8 C 1.37848 * 120.45154 * 359.97438 * 7 6 5 9 9 C 1.38835 * 119.69325 * 0.02562 * 8 7 6 10 10 N 1.36036 * 124.94652 * 180.28341 * 2 1 3 11 11 C 1.46497 * 126.35300 * 0.07781 * 10 2 1 12 12 C 1.53007 * 109.47012 * 270.08846 * 11 10 2 13 13 H 1.08996 * 109.47062 * 54.99896 * 12 11 10 14 14 C 1.47192 * 109.47031 * 294.99634 * 12 11 10 15 15 N 4.71372 * 121.62014 * 139.68079 * 2 1 3 16 16 C 1.53006 * 109.47101 * 174.99957 * 12 11 10 17 17 C 1.50701 * 109.46808 * 185.00144 * 16 12 11 18 18 H 1.07993 * 120.00021 * 359.97438 * 17 16 12 19 19 C 1.37875 * 119.99575 * 179.97438 * 17 16 12 20 20 N 1.31518 * 120.00287 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46805 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46937 * 120.00100 * 21 19 17 24 24 H 1.48496 * 109.47450 * 240.00297 * 21 19 17 25 25 H 1.08998 * 109.46765 * 90.02070 * 1 2 3 26 26 H 1.08994 * 109.47444 * 210.02104 * 1 2 3 27 27 H 1.09003 * 109.46910 * 330.02597 * 1 2 3 28 28 H 1.08008 * 120.05201 * 359.96629 * 5 4 3 29 29 H 1.08000 * 119.66422 * 179.97438 * 6 5 4 30 30 H 1.08004 * 119.77052 * 180.02562 * 7 6 5 31 31 H 1.07999 * 120.15949 * 180.02562 * 8 7 6 32 32 H 1.09000 * 109.47223 * 30.08336 * 11 10 2 33 33 H 1.08997 * 109.47471 * 150.08809 * 11 10 2 34 34 H 1.09006 * 109.46863 * 304.99975 * 16 12 11 35 35 H 1.08996 * 109.47374 * 64.99895 * 16 12 11 36 36 H 0.97003 * 120.00091 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2525 1.0664 0.0000 4 6 3.5621 0.7079 -0.0006 5 6 4.7588 1.4294 -0.0004 6 6 5.9533 0.7667 -0.0017 7 6 5.9931 -0.6205 -0.0024 8 6 4.8253 -1.3529 -0.0013 9 6 3.6019 -0.6966 0.0000 10 7 2.2863 -1.1151 -0.0055 11 6 1.8166 -2.5027 -0.0140 12 6 1.6494 -2.9933 1.4256 13 1 0.9900 -2.3145 1.9665 14 6 2.9639 -3.0312 2.0868 15 7 3.9784 -3.0604 2.5972 16 6 1.0414 -4.3973 1.4186 17 6 0.7629 -4.8312 2.8347 18 1 0.9967 -4.1717 3.6573 19 6 0.2098 -6.0701 3.0799 20 7 -0.0743 -6.8734 2.0780 21 14 -0.1347 -6.6083 4.8352 22 1 0.2729 -5.5308 5.7723 23 1 -1.5862 -6.8790 4.9940 24 1 0.6346 -7.8426 5.1346 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3634 -0.8897 0.5141 27 1 -0.3633 0.8902 0.5134 28 1 4.7393 2.5094 -0.0002 29 1 6.8760 1.3280 -0.0019 30 1 6.9456 -1.1296 -0.0030 31 1 4.8618 -2.4323 -0.0015 32 1 0.8584 -2.5588 -0.5305 33 1 2.5444 -3.1295 -0.5292 34 1 0.1103 -4.3872 0.8519 35 1 1.7406 -5.0938 0.9560 36 1 -0.4632 -7.7452 2.2506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032514632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:58 Heat of formation + Delta-G solvation = 67.313300 kcal Electronic energy + Delta-G solvation = -19698.271090 eV Core-core repulsion = 16760.943432 eV Total energy + Delta-G solvation = -2937.327658 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.17538 -38.81101 -38.14941 -35.99995 -35.05801 -33.25899 -32.19302 -31.13259 -28.73865 -28.36533 -25.72203 -23.75927 -23.10177 -22.95721 -21.07598 -18.78728 -18.59292 -18.06162 -17.75279 -16.80111 -16.47971 -16.24371 -15.44330 -15.13804 -14.87529 -14.79574 -14.36181 -14.15601 -13.94419 -13.81602 -13.52451 -13.41391 -13.10949 -12.97504 -12.79636 -12.71326 -12.60789 -12.40498 -12.27957 -12.07384 -11.67417 -11.43643 -11.13545 -10.93283 -10.57685 -9.24009 -9.04306 -8.22916 -6.30380 0.00565 0.55558 1.36994 1.41706 1.50082 1.61052 1.75229 1.88336 1.93011 2.39558 2.91162 3.04745 3.14881 3.25953 3.52066 3.83754 3.89147 4.03730 4.13784 4.25591 4.44411 4.48170 4.52459 4.62987 4.67155 4.76615 4.80775 4.93007 5.13031 5.23943 5.41730 5.50236 5.53627 5.55935 5.59447 5.74322 5.96159 6.13118 6.23389 6.66263 6.82407 6.92365 7.38635 8.87555 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025521 B = 0.004942 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.884358 B = 5664.466506 C = 6262.386257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.287 3.713 3 N -0.532 5.532 4 C 0.019 3.981 5 C -0.086 4.086 6 C -0.122 4.122 7 C -0.111 4.111 8 C -0.117 4.117 9 C 0.028 3.972 10 N -0.490 5.490 11 C 0.121 3.879 12 C 0.003 3.997 13 H 0.120 0.880 14 C 0.237 3.763 15 N -0.487 5.487 16 C 0.042 3.958 17 C -0.539 4.539 18 H 0.048 0.952 19 C 0.020 3.980 20 N -0.917 5.917 21 Si 0.942 3.058 22 H -0.274 1.274 23 H -0.271 1.271 24 H -0.286 1.286 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.140 0.860 29 H 0.160 0.840 30 H 0.148 0.852 31 H 0.108 0.892 32 H 0.152 0.848 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.009 0.991 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.717 12.668 -8.126 15.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.022 3.978 3 N -0.253 5.253 4 C -0.099 4.099 5 C -0.105 4.105 6 C -0.142 4.142 7 C -0.130 4.130 8 C -0.138 4.138 9 C -0.081 4.081 10 N -0.179 5.179 11 C -0.001 4.001 12 C -0.019 4.019 13 H 0.137 0.863 14 C -0.080 4.080 15 N -0.163 5.163 16 C 0.004 3.996 17 C -0.577 4.577 18 H 0.066 0.934 19 C -0.180 4.180 20 N -0.557 5.557 21 Si 0.769 3.231 22 H -0.199 1.199 23 H -0.196 1.196 24 H -0.212 1.212 25 H 0.130 0.870 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.158 0.842 29 H 0.177 0.823 30 H 0.166 0.834 31 H 0.126 0.874 32 H 0.170 0.830 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.027 0.973 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.846 13.159 -7.401 15.580 hybrid contribution -0.117 -1.658 1.000 1.940 sum 3.729 11.501 -6.401 13.680 Atomic orbital electron populations 1.20681 0.81122 1.06114 1.06028 1.24497 0.97383 0.79989 0.95883 1.70391 1.01078 1.28558 1.25279 1.19494 0.92934 0.90921 1.06511 1.20288 0.89228 1.00390 1.00600 1.20961 0.98169 0.94091 1.00983 1.21195 0.97509 0.94614 0.99731 1.20114 0.90046 0.99248 1.04360 1.19114 0.86293 0.95413 1.07263 1.45561 1.04214 1.07994 1.60156 1.22133 1.04787 0.77757 0.95443 1.19638 0.85704 1.02435 0.94113 0.86271 1.29544 0.94691 0.91009 0.92775 1.81019 1.14013 1.11000 1.10306 1.18988 0.96499 0.87498 0.96639 1.21467 1.41291 1.01411 0.93575 0.93366 1.25571 0.95480 0.96815 1.00146 1.69998 1.43927 1.09730 1.32059 0.85741 0.78264 0.77980 0.81154 1.19900 1.19623 1.21236 0.87000 0.88065 0.88015 0.84246 0.82253 0.83420 0.87365 0.83028 0.88408 0.92909 0.97309 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 9.95 71.24 0.71 -0.64 16 2 C 0.29 7.70 7.85 137.92 1.08 8.79 16 3 N -0.53 -17.05 11.27 -179.96 -2.03 -19.08 16 4 C 0.02 0.63 7.23 39.45 0.29 0.91 16 5 C -0.09 -2.33 10.05 22.25 0.22 -2.11 16 6 C -0.12 -2.84 9.96 22.02 0.22 -2.62 16 7 C -0.11 -2.85 10.03 22.31 0.22 -2.62 16 8 C -0.12 -3.58 9.32 22.32 0.21 -3.37 16 9 C 0.03 0.90 6.23 38.86 0.24 1.14 16 10 N -0.49 -13.86 2.66 -505.58 -1.34 -15.20 16 11 C 0.12 3.06 5.13 86.38 0.44 3.50 16 12 C 0.00 0.11 2.42 -12.60 -0.03 0.08 16 13 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 14 C 0.24 9.40 12.43 89.44 1.11 10.51 16 15 N -0.49 -21.18 18.41 20.00 0.37 -20.81 16 16 C 0.04 1.76 4.42 29.85 0.13 1.89 16 17 C -0.54 -26.93 8.60 25.60 0.22 -26.71 16 18 H 0.05 2.45 7.59 -2.91 -0.02 2.43 16 19 C 0.02 1.02 5.46 84.65 0.46 1.48 16 20 N -0.92 -49.67 13.29 21.45 0.28 -49.39 16 21 Si 0.94 41.91 29.54 68.60 2.03 43.94 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 25 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.10 1.43 7.67 -2.39 -0.02 1.41 16 27 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 29 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 30 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.11 3.41 8.00 -2.91 -0.02 3.39 16 32 H 0.15 2.69 7.63 -2.39 -0.02 2.67 16 33 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -67.79 317.79 5.92 -61.87 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.08 Total: 8.43 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 5.53 Total: -9.77 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -2.72 Total: -104.48 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -67.79 5.92 -61.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032514632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.184 kcal (2) G-P(sol) polarization free energy of solvation -67.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds