Wall clock time and date at job start Mon Mar 30 2020 01:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30113 * 124.95001 * 2 1 4 4 C 1.35786 * 109.64098 * 180.02562 * 3 2 1 5 5 C 1.39740 * 133.59952 * 180.02562 * 4 3 2 6 6 C 1.36601 * 119.88859 * 179.97438 * 5 4 3 7 7 C 1.38782 * 120.66560 * 359.97438 * 6 5 4 8 8 C 1.37850 * 120.44953 * 0.02562 * 7 6 5 9 9 C 1.38830 * 119.69583 * 359.71210 * 8 7 6 10 10 N 1.36034 * 124.95043 * 180.02562 * 2 1 3 11 11 C 1.46509 * 126.34894 * 359.97133 * 10 2 1 12 12 C 1.52997 * 109.46807 * 90.02717 * 11 10 2 13 13 H 1.09000 * 109.47175 * 305.00046 * 12 11 10 14 14 C 1.47193 * 109.47450 * 65.00382 * 12 11 10 15 15 N 4.71489 * 121.70877 * 220.58111 * 2 1 3 16 16 C 1.53006 * 109.46646 * 185.00070 * 12 11 10 17 17 C 1.50699 * 109.46866 * 175.00111 * 16 12 11 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 12 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 12 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47141 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47494 * 119.99680 * 21 19 17 24 24 H 1.48505 * 109.47047 * 239.99860 * 21 19 17 25 25 H 1.09008 * 109.46609 * 269.97187 * 1 2 3 26 26 H 1.09001 * 109.46889 * 29.97019 * 1 2 3 27 27 H 1.08993 * 109.47227 * 149.97180 * 1 2 3 28 28 H 1.08004 * 120.05663 * 359.93551 * 5 4 3 29 29 H 1.08001 * 119.66704 * 180.02562 * 6 5 4 30 30 H 1.08000 * 119.77143 * 179.97438 * 7 6 5 31 31 H 1.08007 * 120.15192 * 179.97438 * 8 7 6 32 32 H 1.09007 * 109.46799 * 330.03019 * 11 10 2 33 33 H 1.08992 * 109.46990 * 210.02878 * 11 10 2 34 34 H 1.08993 * 109.46955 * 295.00330 * 16 12 11 35 35 H 1.09000 * 109.47050 * 55.00158 * 16 12 11 36 36 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0665 0.0000 4 6 3.5621 0.7080 -0.0006 5 6 4.7587 1.4296 -0.0004 6 6 5.9533 0.7669 -0.0006 7 6 5.9931 -0.6203 -0.0005 8 6 4.8253 -1.3528 -0.0007 9 6 3.6019 -0.6965 0.0051 10 7 2.2863 -1.1150 -0.0005 11 6 1.8166 -2.5027 -0.0005 12 6 1.6532 -2.9857 -1.4430 13 1 0.9952 -2.3041 -1.9821 14 6 2.9694 -3.0202 -2.1011 15 7 3.9852 -3.0464 -2.6093 16 6 1.0451 -4.3898 -1.4449 17 6 0.7704 -4.8163 -2.8639 18 1 1.0056 -4.1522 -3.6825 19 6 0.2180 -6.0539 -3.1171 20 7 -0.0688 -6.8624 -2.1202 21 14 -0.1219 -6.5829 -4.8760 22 1 0.2882 -5.5006 -5.8065 23 1 0.6483 -7.8157 -5.1798 24 1 -1.5730 -6.8528 -5.0401 25 1 -0.3633 -0.0005 1.0278 26 1 -0.3633 0.8903 -0.5134 27 1 -0.3633 -0.8897 -0.5142 28 1 4.7392 2.5095 -0.0007 29 1 6.8760 1.3282 0.0000 30 1 6.9456 -1.1295 -0.0011 31 1 4.8619 -2.4322 -0.0010 32 1 0.8570 -2.5615 0.5133 33 1 2.5430 -3.1322 0.5133 34 1 1.7432 -5.0886 -0.9841 35 1 0.1126 -4.3826 -0.8806 36 1 -0.4572 -7.7332 -2.2983 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032514633.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:00 Heat of formation + Delta-G solvation = 83.653013 kcal Electronic energy + Delta-G solvation = -19698.026143 eV Core-core repulsion = 16761.407028 eV Total energy + Delta-G solvation = -2936.619115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.09013 -37.57638 -36.83826 -34.50392 -33.41057 -31.78181 -31.22825 -29.96906 -27.48017 -27.08766 -24.25118 -22.11326 -21.99753 -21.87362 -19.96699 -17.40881 -17.26332 -16.72217 -16.28438 -15.53907 -15.24775 -14.70119 -14.14275 -14.02354 -13.63252 -13.35716 -13.13097 -12.96920 -12.71429 -12.59757 -12.23760 -11.92246 -11.87398 -11.73566 -11.40441 -11.28555 -11.20790 -10.96143 -10.70588 -10.54165 -10.27127 -9.84843 -9.74014 -9.40968 -8.59420 -8.15355 -7.93859 -6.23592 -4.27753 1.07838 1.63942 2.69093 2.87376 3.20197 3.29208 3.33674 3.41354 3.51131 4.00668 4.22900 4.29654 4.44245 4.55407 4.97368 5.08661 5.10913 5.14839 5.15894 5.30905 5.42602 5.46211 5.52485 5.54454 5.72311 5.80705 5.86548 6.03344 6.16791 6.27249 6.58968 6.61501 6.65495 6.99163 7.18533 7.25422 7.28508 7.70920 8.01683 8.05041 8.25072 8.76294 9.39147 10.87089 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025485 B = 0.004945 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.433161 B = 5661.235205 C = 6259.525711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.286 3.714 3 N -0.502 5.502 4 C 0.047 3.953 5 C -0.073 4.073 6 C -0.129 4.129 7 C -0.109 4.109 8 C -0.096 4.096 9 C 0.050 3.950 10 N -0.486 5.486 11 C 0.113 3.887 12 C -0.007 4.007 13 H 0.107 0.893 14 C 0.231 3.769 15 N -0.452 5.452 16 C 0.034 3.966 17 C -0.529 4.529 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.281 1.281 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.029 0.971 35 H 0.043 0.957 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.114 11.760 7.861 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.021 3.979 3 N -0.223 5.223 4 C -0.072 4.072 5 C -0.092 4.092 6 C -0.150 4.150 7 C -0.129 4.129 8 C -0.117 4.117 9 C -0.059 4.059 10 N -0.175 5.175 11 C -0.009 4.009 12 C -0.030 4.030 13 H 0.124 0.876 14 C -0.086 4.086 15 N -0.128 5.128 16 C -0.004 4.004 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.207 1.207 25 H 0.106 0.894 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.114 0.886 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.243 12.245 7.134 14.793 hybrid contribution -0.296 -1.421 -0.890 1.702 sum 3.946 10.824 6.244 13.104 Atomic orbital electron populations 1.20447 0.84206 1.05160 1.04189 1.23662 0.95830 0.80676 0.97692 1.70399 1.00798 1.27399 1.23684 1.19041 0.92106 0.90350 1.05665 1.19930 0.89287 0.99418 1.00586 1.20578 0.97286 0.94295 1.02823 1.20813 0.97164 0.93931 1.00974 1.19995 0.89311 0.99479 1.02896 1.18867 0.85501 0.95110 1.06441 1.45514 1.04526 1.07662 1.59832 1.22132 1.02748 0.78170 0.97887 1.19658 0.87260 1.04369 0.91694 0.87555 1.28920 0.94299 0.91931 0.93493 1.81045 1.12770 1.10031 1.08985 1.19182 0.96448 0.85827 0.98968 1.21092 1.42275 1.01595 0.91776 0.92434 1.24931 0.95119 0.96372 0.97323 1.69931 1.42771 1.09232 1.30838 0.86516 0.78039 0.78789 0.84659 1.19663 1.20856 1.20690 0.89400 0.88723 0.89336 0.85763 0.85727 0.85649 0.86434 0.86746 0.88598 0.95251 0.93914 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 9.95 36.01 0.36 -0.43 16 2 C 0.29 4.06 7.85 -154.82 -1.22 2.85 16 3 N -0.50 -8.24 11.27 -8.23 -0.09 -8.33 16 4 C 0.05 0.77 7.23 -84.70 -0.61 0.16 16 5 C -0.07 -1.03 10.05 -39.61 -0.40 -1.42 16 6 C -0.13 -1.62 9.96 -39.97 -0.40 -2.02 16 7 C -0.11 -1.46 10.03 -39.52 -0.40 -1.86 16 8 C -0.10 -1.48 9.31 -39.50 -0.37 -1.85 16 9 C 0.05 0.81 6.24 -83.99 -0.52 0.29 16 10 N -0.49 -7.18 2.65 -111.15 -0.30 -7.48 16 11 C 0.11 1.53 5.13 -4.04 -0.02 1.51 16 12 C -0.01 -0.12 2.42 -93.41 -0.23 -0.35 16 13 H 0.11 1.74 8.14 -51.93 -0.42 1.31 16 14 C 0.23 4.61 12.45 -20.76 -0.26 4.36 16 15 N -0.45 -9.78 18.41 42.16 0.78 -9.00 16 16 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 17 C -0.53 -13.37 8.60 -34.44 -0.30 -13.66 16 18 H 0.06 1.48 7.59 -52.48 -0.40 1.08 16 19 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -24.24 13.29 55.43 0.74 -23.50 16 21 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.09 0.77 7.65 -51.93 -0.40 0.38 16 28 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.82 8.01 -52.48 -0.42 1.40 16 32 H 0.11 1.21 7.62 -51.93 -0.40 0.81 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 317.79 15.07 4.79 4.79 Total: -1.00 -31.44 317.79 -8.23 -39.67 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -4.55 Total: -1.52 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -4.58 Total: -10.22 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 1.12 Total: -48.31 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.44 -8.23 -39.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032514633.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.324 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds