Wall clock time and date at job start Mon Mar 30 2020 01:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30113 * 124.95001 * 2 1 4 4 C 1.35786 * 109.64098 * 180.02562 * 3 2 1 5 5 C 1.39740 * 133.59952 * 180.02562 * 4 3 2 6 6 C 1.36601 * 119.88859 * 179.97438 * 5 4 3 7 7 C 1.38782 * 120.66560 * 359.97438 * 6 5 4 8 8 C 1.37850 * 120.44953 * 0.02562 * 7 6 5 9 9 C 1.38830 * 119.69583 * 359.71210 * 8 7 6 10 10 N 1.36034 * 124.95043 * 180.02562 * 2 1 3 11 11 C 1.46509 * 126.34894 * 359.97133 * 10 2 1 12 12 C 1.52997 * 109.46807 * 90.02717 * 11 10 2 13 13 H 1.09000 * 109.47175 * 305.00046 * 12 11 10 14 14 C 1.47193 * 109.47450 * 65.00382 * 12 11 10 15 15 N 4.71489 * 121.70877 * 220.58111 * 2 1 3 16 16 C 1.53006 * 109.46646 * 185.00070 * 12 11 10 17 17 C 1.50699 * 109.46866 * 175.00111 * 16 12 11 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 12 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 12 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47141 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47494 * 119.99680 * 21 19 17 24 24 H 1.48505 * 109.47047 * 239.99860 * 21 19 17 25 25 H 1.09008 * 109.46609 * 269.97187 * 1 2 3 26 26 H 1.09001 * 109.46889 * 29.97019 * 1 2 3 27 27 H 1.08993 * 109.47227 * 149.97180 * 1 2 3 28 28 H 1.08004 * 120.05663 * 359.93551 * 5 4 3 29 29 H 1.08001 * 119.66704 * 180.02562 * 6 5 4 30 30 H 1.08000 * 119.77143 * 179.97438 * 7 6 5 31 31 H 1.08007 * 120.15192 * 179.97438 * 8 7 6 32 32 H 1.09007 * 109.46799 * 330.03019 * 11 10 2 33 33 H 1.08992 * 109.46990 * 210.02878 * 11 10 2 34 34 H 1.08993 * 109.46955 * 295.00330 * 16 12 11 35 35 H 1.09000 * 109.47050 * 55.00158 * 16 12 11 36 36 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0665 0.0000 4 6 3.5621 0.7080 -0.0006 5 6 4.7587 1.4296 -0.0004 6 6 5.9533 0.7669 -0.0006 7 6 5.9931 -0.6203 -0.0005 8 6 4.8253 -1.3528 -0.0007 9 6 3.6019 -0.6965 0.0051 10 7 2.2863 -1.1150 -0.0005 11 6 1.8166 -2.5027 -0.0005 12 6 1.6532 -2.9857 -1.4430 13 1 0.9952 -2.3041 -1.9821 14 6 2.9694 -3.0202 -2.1011 15 7 3.9852 -3.0464 -2.6093 16 6 1.0451 -4.3898 -1.4449 17 6 0.7704 -4.8163 -2.8639 18 1 1.0056 -4.1522 -3.6825 19 6 0.2180 -6.0539 -3.1171 20 7 -0.0688 -6.8624 -2.1202 21 14 -0.1219 -6.5829 -4.8760 22 1 0.2882 -5.5006 -5.8065 23 1 0.6483 -7.8157 -5.1798 24 1 -1.5730 -6.8528 -5.0401 25 1 -0.3633 -0.0005 1.0278 26 1 -0.3633 0.8903 -0.5134 27 1 -0.3633 -0.8897 -0.5142 28 1 4.7392 2.5095 -0.0007 29 1 6.8760 1.3282 0.0000 30 1 6.9456 -1.1295 -0.0011 31 1 4.8619 -2.4322 -0.0010 32 1 0.8570 -2.5615 0.5133 33 1 2.5430 -3.1322 0.5133 34 1 1.7432 -5.0886 -0.9841 35 1 0.1126 -4.3826 -0.8806 36 1 -0.4572 -7.7332 -2.2983 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032514633.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:00 Heat of formation + Delta-G solvation = 67.307209 kcal Electronic energy + Delta-G solvation = -19698.734950 eV Core-core repulsion = 16761.407028 eV Total energy + Delta-G solvation = -2937.327922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.17445 -38.80938 -38.14826 -35.99793 -35.05740 -33.25936 -32.19323 -31.13261 -28.73902 -28.36508 -25.72088 -23.75898 -23.10190 -22.95740 -21.07544 -18.78614 -18.59298 -18.06110 -17.75501 -16.79900 -16.47999 -16.24463 -15.44122 -15.13898 -14.87445 -14.79701 -14.36171 -14.15579 -13.94335 -13.81569 -13.52442 -13.41298 -13.10880 -12.97564 -12.79587 -12.71303 -12.60692 -12.40471 -12.27787 -12.07528 -11.67114 -11.43675 -11.13756 -10.93222 -10.57651 -9.24013 -9.04296 -8.22926 -6.30369 0.00615 0.55464 1.36992 1.41704 1.50072 1.60929 1.75329 1.88319 1.93007 2.39577 2.91123 3.04759 3.14876 3.25980 3.52073 3.83807 3.89132 4.03738 4.13791 4.25610 4.44411 4.48180 4.52425 4.62922 4.67119 4.76611 4.80757 4.93003 5.13041 5.23940 5.41741 5.50220 5.53634 5.55924 5.59449 5.74347 5.96147 6.13128 6.23386 6.66322 6.82412 6.92353 7.38634 8.87585 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025485 B = 0.004945 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.433161 B = 5661.235205 C = 6259.525711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.287 3.713 3 N -0.532 5.532 4 C 0.019 3.981 5 C -0.086 4.086 6 C -0.122 4.122 7 C -0.111 4.111 8 C -0.117 4.117 9 C 0.028 3.972 10 N -0.490 5.490 11 C 0.121 3.879 12 C 0.004 3.996 13 H 0.120 0.880 14 C 0.237 3.763 15 N -0.487 5.487 16 C 0.043 3.957 17 C -0.539 4.539 18 H 0.048 0.952 19 C 0.020 3.980 20 N -0.918 5.918 21 Si 0.942 3.058 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.271 1.271 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.140 0.860 29 H 0.160 0.840 30 H 0.148 0.852 31 H 0.108 0.892 32 H 0.152 0.848 33 H 0.098 0.902 34 H 0.009 0.991 35 H 0.053 0.947 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.694 12.620 8.201 15.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.023 3.977 3 N -0.253 5.253 4 C -0.099 4.099 5 C -0.105 4.105 6 C -0.142 4.142 7 C -0.131 4.131 8 C -0.138 4.138 9 C -0.081 4.081 10 N -0.179 5.179 11 C -0.001 4.001 12 C -0.019 4.019 13 H 0.137 0.863 14 C -0.080 4.080 15 N -0.163 5.163 16 C 0.004 3.996 17 C -0.577 4.577 18 H 0.066 0.934 19 C -0.180 4.180 20 N -0.557 5.557 21 Si 0.769 3.231 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.196 1.196 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.157 0.843 29 H 0.177 0.823 30 H 0.166 0.834 31 H 0.126 0.874 32 H 0.170 0.830 33 H 0.116 0.884 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.825 13.115 7.472 15.571 hybrid contribution -0.114 -1.651 -0.999 1.933 sum 3.711 11.464 6.473 13.678 Atomic orbital electron populations 1.20682 0.81122 1.06114 1.06028 1.24497 0.97382 0.79990 0.95881 1.70396 1.01077 1.28555 1.25286 1.19496 0.92932 0.90928 1.06499 1.20286 0.89231 1.00388 1.00612 1.20963 0.98169 0.94093 1.00978 1.21197 0.97511 0.94612 0.99740 1.20114 0.90044 0.99253 1.04341 1.19111 0.86289 0.95408 1.07278 1.45562 1.04215 1.07999 1.60155 1.22133 1.04795 0.77780 0.95412 1.19633 0.85659 1.02464 0.94114 0.86279 1.29550 0.94700 0.91007 0.92764 1.81026 1.14013 1.11004 1.10296 1.18986 0.96508 0.87502 0.96626 1.21467 1.41314 1.01384 0.93573 0.93370 1.25571 0.95470 0.96786 1.00192 1.69997 1.43908 1.09605 1.32208 0.85740 0.78260 0.77971 0.81160 1.19901 1.21233 1.19624 0.86996 0.88020 0.88060 0.84251 0.82256 0.83425 0.87356 0.83034 0.88407 0.97303 0.92910 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 9.95 71.24 0.71 -0.64 16 2 C 0.29 7.70 7.85 137.92 1.08 8.79 16 3 N -0.53 -17.06 11.27 -179.96 -2.03 -19.09 16 4 C 0.02 0.63 7.23 39.45 0.29 0.91 16 5 C -0.09 -2.33 10.05 22.25 0.22 -2.11 16 6 C -0.12 -2.84 9.96 22.02 0.22 -2.62 16 7 C -0.11 -2.85 10.03 22.31 0.22 -2.63 16 8 C -0.12 -3.58 9.31 22.32 0.21 -3.37 16 9 C 0.03 0.89 6.24 38.86 0.24 1.14 16 10 N -0.49 -13.86 2.65 -505.58 -1.34 -15.20 16 11 C 0.12 3.05 5.13 86.38 0.44 3.50 16 12 C 0.00 0.12 2.42 -12.60 -0.03 0.09 16 13 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 14 C 0.24 9.40 12.45 89.44 1.11 10.51 16 15 N -0.49 -21.18 18.41 20.01 0.37 -20.81 16 16 C 0.04 1.76 4.42 29.85 0.13 1.89 16 17 C -0.54 -26.93 8.60 25.60 0.22 -26.71 16 18 H 0.05 2.45 7.59 -2.91 -0.02 2.43 16 19 C 0.02 1.02 5.46 84.65 0.46 1.48 16 20 N -0.92 -49.67 13.29 21.45 0.28 -49.39 16 21 Si 0.94 41.92 29.54 68.60 2.03 43.95 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.10 1.43 7.65 -2.39 -0.02 1.41 16 28 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 29 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 30 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.11 3.41 8.01 -2.91 -0.02 3.39 16 32 H 0.15 2.69 7.62 -2.38 -0.02 2.67 16 33 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.27 13.68 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -67.80 317.79 5.92 -61.87 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.08 Total: 8.43 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 5.53 Total: -9.77 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -2.72 Total: -104.49 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -67.80 5.92 -61.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032514633.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.180 kcal (2) G-P(sol) polarization free energy of solvation -67.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds