Wall clock time and date at job start Mon Mar 30 2020 00:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36837 * 119.99529 * 2 1 4 4 H 1.08007 * 119.99279 * 205.12731 * 3 2 1 5 5 C 1.38749 * 120.00589 * 25.13003 * 3 2 1 6 6 N 1.31620 * 119.99674 * 10.94839 * 5 3 2 7 7 Si 1.86798 * 120.00231 * 190.94977 * 5 3 2 8 8 H 1.48505 * 109.47014 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47512 * 119.99920 * 7 5 3 10 10 H 1.48501 * 109.47158 * 240.00223 * 7 5 3 11 11 C 1.39376 * 119.99878 * 179.97438 * 2 1 3 12 12 C 1.39092 * 120.03679 * 0.02562 * 11 2 1 13 13 C 1.37978 * 119.97063 * 180.27576 * 12 11 2 14 14 C 1.38825 * 120.03179 * 359.49651 * 13 12 11 15 15 O 1.35922 * 119.96912 * 180.27628 * 14 13 12 16 16 C 1.35880 * 117.99994 * 77.88423 * 15 14 13 17 17 C 1.38764 * 120.06018 * 3.90947 * 16 15 14 18 18 C 1.38125 * 119.94260 * 179.81002 * 17 16 15 19 19 C 1.38274 * 120.05730 * 0.44449 * 18 17 16 20 20 C 1.38267 * 120.12075 * 359.78455 * 19 18 17 21 21 C 1.38137 * 120.05593 * 0.02562 * 20 19 18 22 22 C 1.38822 * 120.06440 * 0.50423 * 14 13 12 23 23 C 1.37987 * 120.02932 * 359.74771 * 22 14 13 24 24 H 1.09002 * 109.47510 * 265.49337 * 1 2 3 25 25 H 1.09004 * 109.46874 * 25.49097 * 1 2 3 26 26 H 1.09000 * 109.46866 * 145.49087 * 1 2 3 27 27 H 0.97003 * 120.00222 * 179.97438 * 6 5 3 28 28 H 1.08000 * 120.00993 * 0.02562 * 12 11 2 29 29 H 1.08000 * 119.98483 * 179.72558 * 13 12 11 30 30 H 1.08005 * 120.02470 * 0.02562 * 17 16 15 31 31 H 1.08000 * 119.97441 * 180.18422 * 18 17 16 32 32 H 1.08002 * 119.94255 * 179.76671 * 19 18 17 33 33 H 1.08002 * 119.97427 * 179.97438 * 20 19 18 34 34 H 1.08005 * 120.02984 * 179.97438 * 21 20 19 35 35 H 1.08001 * 119.99039 * 179.72757 * 22 14 13 36 36 H 1.08008 * 120.01433 * 179.97438 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1851 0.0000 4 1 3.1525 1.2293 -0.3972 5 6 1.5539 2.3299 0.5103 6 7 0.4279 2.2408 1.1859 7 14 2.3505 3.9974 0.2383 8 1 3.6003 3.8270 -0.5456 9 1 1.4147 4.8776 -0.5065 10 1 2.6704 4.6133 1.5512 11 6 2.1619 -1.2070 0.0005 12 6 1.4672 -2.4121 0.0005 13 6 2.1584 -3.6062 0.0068 14 6 3.5467 -3.6054 0.0026 15 8 4.2263 -4.7825 0.0031 16 6 4.3236 -5.4635 -1.1687 17 6 3.8097 -4.9159 -2.3356 18 6 3.9135 -5.6084 -3.5262 19 6 4.5205 -6.8505 -3.5542 20 6 5.0292 -7.4006 -2.3922 21 6 4.9316 -6.7105 -1.1995 22 6 4.2415 -2.4036 0.0026 23 6 3.5528 -1.2078 0.0016 24 1 -0.3634 -0.0807 1.0245 25 1 -0.3633 0.9277 -0.4423 26 1 -0.3633 -0.8468 -0.5822 27 1 0.0119 3.0410 1.5430 28 1 0.3872 -2.4129 -0.0003 29 1 1.6192 -4.5419 0.0113 30 1 3.3322 -3.9474 -2.3135 31 1 3.5164 -5.1814 -4.4352 32 1 4.5973 -7.3920 -4.4855 33 1 5.5025 -8.3711 -2.4168 34 1 5.3287 -7.1408 -0.2920 35 1 5.3215 -2.4044 0.0037 36 1 4.0936 -0.2729 0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038351487.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:16 Heat of formation + Delta-G solvation = 37.664265 kcal Electronic energy + Delta-G solvation = -19343.715127 eV Core-core repulsion = 16372.809039 eV Total energy + Delta-G solvation = -2970.906088 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.17967 -38.46393 -37.24376 -35.14316 -32.01629 -30.77833 -30.24579 -29.80745 -27.81864 -26.68031 -24.03628 -22.40006 -22.24917 -21.59458 -20.23086 -18.15123 -17.45943 -16.71720 -16.03337 -15.55066 -15.14245 -14.65382 -14.25201 -13.85067 -13.71151 -13.47039 -13.31382 -13.18390 -12.77269 -12.60980 -11.89435 -11.68379 -11.39948 -11.35682 -11.31788 -11.27460 -10.93218 -10.76144 -10.59544 -10.45322 -9.79412 -9.41200 -8.82611 -8.68248 -8.17757 -7.91362 -6.75549 -6.46923 -3.93697 1.52577 1.65335 2.18918 2.31083 3.04532 3.10384 3.14281 3.90893 3.92204 3.99834 4.58918 4.81229 4.97667 5.06367 5.11748 5.34212 5.56863 5.65418 5.70113 5.72436 5.84943 6.17731 6.18510 6.30842 6.44735 6.50874 6.55399 6.65396 6.70075 6.73415 6.83139 6.97322 7.08926 7.15552 7.23095 7.35119 7.35703 7.58795 7.83780 8.35456 8.48175 9.10046 9.41418 10.45791 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.036565 B = 0.003907 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.565401 B = 7164.472536 C = 7288.231551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.436 5.436 3 C -0.311 4.311 4 H 0.099 0.901 5 C 0.029 3.971 6 N -0.871 5.871 7 Si 0.929 3.071 8 H -0.266 1.266 9 H -0.278 1.278 10 H -0.279 1.279 11 C 0.212 3.788 12 C -0.229 4.229 13 C -0.064 4.064 14 C -0.069 4.069 15 O -0.248 6.248 16 C 0.131 3.869 17 C -0.192 4.192 18 C -0.085 4.085 19 C -0.171 4.171 20 C -0.089 4.089 21 C -0.163 4.163 22 C -0.058 4.058 23 C -0.205 4.205 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.030 0.970 27 H 0.271 0.729 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.134 0.866 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.922 -10.563 -5.811 12.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.119 5.119 3 C -0.439 4.439 4 H 0.116 0.884 5 C -0.176 4.176 6 N -0.506 5.506 7 Si 0.755 3.245 8 H -0.191 1.191 9 H -0.204 1.204 10 H -0.205 1.205 11 C 0.092 3.908 12 C -0.254 4.254 13 C -0.083 4.083 14 C -0.114 4.114 15 O -0.160 6.160 16 C 0.086 3.914 17 C -0.211 4.211 18 C -0.104 4.104 19 C -0.189 4.189 20 C -0.107 4.107 21 C -0.181 4.181 22 C -0.078 4.078 23 C -0.229 4.229 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.152 0.848 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.128 0.872 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.629 -10.102 -5.510 12.065 hybrid contribution 0.100 0.994 -0.109 1.005 sum 3.728 -9.108 -5.618 11.332 Atomic orbital electron populations 1.21500 0.80400 0.99953 1.00695 1.42709 1.04539 1.02232 1.62371 1.19703 1.01168 0.84736 1.38322 0.88356 1.25430 0.96689 1.00467 0.94983 1.70090 1.18185 1.30077 1.32251 0.85811 0.79250 0.81038 0.78384 1.19065 1.20421 1.20453 1.18069 0.91498 0.86136 0.95114 1.20227 0.98745 0.90744 1.15636 1.20725 0.92713 0.97179 0.97720 1.17908 0.89808 0.82991 1.20740 1.84540 1.70038 1.33128 1.28261 1.19654 0.93996 0.91697 0.86055 1.21465 1.04963 1.02192 0.92463 1.20965 0.97569 0.94503 0.97325 1.20963 1.02929 0.96838 0.98185 1.20861 0.98697 0.99139 0.91995 1.20403 1.04997 0.93716 0.99016 1.20687 0.98603 0.91048 0.97457 1.20340 0.92486 0.97133 1.12958 0.92961 0.90703 0.95186 0.91874 0.86868 0.87466 0.84848 0.86267 0.86531 0.85979 0.85657 0.87207 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.62 8.33 59.85 0.50 3.12 16 2 N -0.44 -10.49 3.12 -120.48 -0.38 -10.87 16 3 C -0.31 -7.78 8.97 -15.13 -0.14 -7.91 16 4 H 0.10 2.39 6.23 -52.48 -0.33 2.06 16 5 C 0.03 0.72 5.07 -17.45 -0.09 0.63 16 6 N -0.87 -22.17 10.78 55.49 0.60 -21.57 16 7 Si 0.93 19.15 29.57 -169.99 -5.03 14.12 16 8 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 9 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 10 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 11 C 0.21 4.76 6.52 -83.80 -0.55 4.22 16 12 C -0.23 -4.66 9.20 -39.36 -0.36 -5.02 16 13 C -0.06 -1.21 9.18 -39.46 -0.36 -1.57 16 14 C -0.07 -1.34 4.29 -39.15 -0.17 -1.50 16 15 O -0.25 -4.63 9.98 -3.63 -0.04 -4.66 16 16 C 0.13 2.17 6.62 -39.19 -0.26 1.91 16 17 C -0.19 -3.07 9.00 -39.43 -0.35 -3.42 16 18 C -0.09 -1.15 10.04 -39.61 -0.40 -1.55 16 19 C -0.17 -2.06 10.04 -39.56 -0.40 -2.46 16 20 C -0.09 -1.07 10.04 -39.61 -0.40 -1.47 16 21 C -0.16 -2.29 9.99 -39.42 -0.39 -2.69 16 22 C -0.06 -1.14 9.98 -39.46 -0.39 -1.53 16 23 C -0.21 -4.38 9.26 -39.36 -0.36 -4.75 16 24 H 0.05 1.21 7.83 -51.93 -0.41 0.80 16 25 H 0.07 1.74 6.77 -51.93 -0.35 1.38 16 26 H 0.03 0.58 6.45 -51.93 -0.33 0.24 16 27 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 28 H 0.11 2.15 6.23 -52.49 -0.33 1.83 16 29 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.13 2.30 6.48 -52.48 -0.34 1.96 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 35 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.12 2.61 6.20 -52.48 -0.33 2.28 16 LS Contribution 304.15 15.07 4.58 4.58 Total: -1.00 -26.46 304.15 -8.47 -34.93 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.09 Total: 7.47 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -4.12 Total: -24.00 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.22 Total: -32.44 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.04 Total: -4.66 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.46 -8.47 -34.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038351487.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.590 kcal (2) G-P(sol) polarization free energy of solvation -26.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds