Wall clock time and date at job start Mon Mar 30 2020 00:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36837 * 119.99529 * 2 1 4 4 H 1.08007 * 119.99279 * 205.12731 * 3 2 1 5 5 C 1.38749 * 120.00589 * 25.13003 * 3 2 1 6 6 N 1.31620 * 119.99674 * 10.94839 * 5 3 2 7 7 Si 1.86798 * 120.00231 * 190.94977 * 5 3 2 8 8 H 1.48505 * 109.47014 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47512 * 119.99920 * 7 5 3 10 10 H 1.48501 * 109.47158 * 240.00223 * 7 5 3 11 11 C 1.39376 * 119.99878 * 179.97438 * 2 1 3 12 12 C 1.39092 * 120.03679 * 0.02562 * 11 2 1 13 13 C 1.37978 * 119.97063 * 180.27576 * 12 11 2 14 14 C 1.38825 * 120.03179 * 359.49651 * 13 12 11 15 15 O 1.35922 * 119.96912 * 180.27628 * 14 13 12 16 16 C 1.35880 * 117.99994 * 77.88423 * 15 14 13 17 17 C 1.38764 * 120.06018 * 3.90947 * 16 15 14 18 18 C 1.38125 * 119.94260 * 179.81002 * 17 16 15 19 19 C 1.38274 * 120.05730 * 0.44449 * 18 17 16 20 20 C 1.38267 * 120.12075 * 359.78455 * 19 18 17 21 21 C 1.38137 * 120.05593 * 0.02562 * 20 19 18 22 22 C 1.38822 * 120.06440 * 0.50423 * 14 13 12 23 23 C 1.37987 * 120.02932 * 359.74771 * 22 14 13 24 24 H 1.09002 * 109.47510 * 265.49337 * 1 2 3 25 25 H 1.09004 * 109.46874 * 25.49097 * 1 2 3 26 26 H 1.09000 * 109.46866 * 145.49087 * 1 2 3 27 27 H 0.97003 * 120.00222 * 179.97438 * 6 5 3 28 28 H 1.08000 * 120.00993 * 0.02562 * 12 11 2 29 29 H 1.08000 * 119.98483 * 179.72558 * 13 12 11 30 30 H 1.08005 * 120.02470 * 0.02562 * 17 16 15 31 31 H 1.08000 * 119.97441 * 180.18422 * 18 17 16 32 32 H 1.08002 * 119.94255 * 179.76671 * 19 18 17 33 33 H 1.08002 * 119.97427 * 179.97438 * 20 19 18 34 34 H 1.08005 * 120.02984 * 179.97438 * 21 20 19 35 35 H 1.08001 * 119.99039 * 179.72757 * 22 14 13 36 36 H 1.08008 * 120.01433 * 179.97438 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1851 0.0000 4 1 3.1525 1.2293 -0.3972 5 6 1.5539 2.3299 0.5103 6 7 0.4279 2.2408 1.1859 7 14 2.3505 3.9974 0.2383 8 1 3.6003 3.8270 -0.5456 9 1 1.4147 4.8776 -0.5065 10 1 2.6704 4.6133 1.5512 11 6 2.1619 -1.2070 0.0005 12 6 1.4672 -2.4121 0.0005 13 6 2.1584 -3.6062 0.0068 14 6 3.5467 -3.6054 0.0026 15 8 4.2263 -4.7825 0.0031 16 6 4.3236 -5.4635 -1.1687 17 6 3.8097 -4.9159 -2.3356 18 6 3.9135 -5.6084 -3.5262 19 6 4.5205 -6.8505 -3.5542 20 6 5.0292 -7.4006 -2.3922 21 6 4.9316 -6.7105 -1.1995 22 6 4.2415 -2.4036 0.0026 23 6 3.5528 -1.2078 0.0016 24 1 -0.3634 -0.0807 1.0245 25 1 -0.3633 0.9277 -0.4423 26 1 -0.3633 -0.8468 -0.5822 27 1 0.0119 3.0410 1.5430 28 1 0.3872 -2.4129 -0.0003 29 1 1.6192 -4.5419 0.0113 30 1 3.3322 -3.9474 -2.3135 31 1 3.5164 -5.1814 -4.4352 32 1 4.5973 -7.3920 -4.4855 33 1 5.5025 -8.3711 -2.4168 34 1 5.3287 -7.1408 -0.2920 35 1 5.3215 -2.4044 0.0037 36 1 4.0936 -0.2729 0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038351487.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:15 Heat of formation + Delta-G solvation = 26.255526 kcal Electronic energy + Delta-G solvation = -19344.209847 eV Core-core repulsion = 16372.809039 eV Total energy + Delta-G solvation = -2971.400808 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55652 -39.97339 -38.57122 -36.77586 -33.77754 -31.94457 -31.80086 -31.00062 -29.39649 -28.45043 -25.68487 -23.69097 -23.49576 -23.11164 -21.75210 -19.55043 -19.16713 -18.24806 -17.43942 -16.76469 -16.66734 -16.30170 -15.42803 -15.38131 -15.26682 -15.11571 -14.67181 -14.31052 -14.26472 -14.12743 -13.50322 -13.29981 -13.00879 -12.83054 -12.74691 -12.62832 -12.44552 -12.39359 -12.07495 -11.80312 -11.39656 -11.15295 -10.41970 -9.89603 -9.78003 -9.11089 -8.51883 -8.23114 -5.80624 0.46134 0.51756 0.63513 0.66914 1.41524 1.42302 1.54078 2.23314 2.47020 2.89720 2.92268 3.10567 3.25905 4.02546 4.11156 4.11759 4.16073 4.34889 4.50576 4.51309 4.58546 4.66369 4.72469 4.81466 4.93258 5.02122 5.15673 5.22349 5.27924 5.34687 5.44820 5.51023 5.58197 5.65741 5.67879 5.72415 5.88064 6.00756 6.18154 6.68218 6.91162 7.34526 7.63746 8.66525 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.036565 B = 0.003907 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.565401 B = 7164.472536 C = 7288.231551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.133 3.867 2 N -0.466 5.466 3 C -0.330 4.330 4 H 0.095 0.905 5 C -0.015 4.015 6 N -0.904 5.904 7 Si 0.992 3.008 8 H -0.261 1.261 9 H -0.275 1.275 10 H -0.280 1.280 11 C 0.195 3.805 12 C -0.228 4.228 13 C -0.064 4.064 14 C -0.048 4.048 15 O -0.264 6.264 16 C 0.099 3.901 17 C -0.210 4.210 18 C -0.092 4.092 19 C -0.161 4.161 20 C -0.082 4.082 21 C -0.167 4.167 22 C -0.062 4.062 23 C -0.216 4.216 24 H 0.033 0.967 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.271 0.729 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.112 0.888 31 H 0.138 0.862 32 H 0.151 0.849 33 H 0.160 0.840 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.233 -13.179 -7.266 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.153 5.153 3 C -0.459 4.459 4 H 0.113 0.887 5 C -0.216 4.216 6 N -0.541 5.541 7 Si 0.816 3.184 8 H -0.185 1.185 9 H -0.200 1.200 10 H -0.206 1.206 11 C 0.078 3.922 12 C -0.252 4.252 13 C -0.083 4.083 14 C -0.094 4.094 15 O -0.176 6.176 16 C 0.056 3.944 17 C -0.229 4.229 18 C -0.110 4.110 19 C -0.179 4.179 20 C -0.100 4.100 21 C -0.185 4.185 22 C -0.081 4.081 23 C -0.240 4.240 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.130 0.870 31 H 0.156 0.844 32 H 0.169 0.831 33 H 0.177 0.823 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.968 -12.774 -6.981 15.382 hybrid contribution -0.148 1.387 0.242 1.416 sum 4.819 -11.387 -6.739 14.082 Atomic orbital electron populations 1.21286 0.80057 0.99994 0.99692 1.42767 1.04858 1.02345 1.65312 1.19885 1.01443 0.85734 1.38798 0.88743 1.26197 0.97268 1.03363 0.94742 1.70192 1.19518 1.30659 1.33753 0.84866 0.78504 0.77021 0.78018 1.18496 1.20048 1.20602 1.18430 0.92121 0.86539 0.95076 1.20415 0.99482 0.90411 1.14843 1.20939 0.92834 0.97581 0.96980 1.18047 0.90078 0.83515 1.17733 1.84439 1.70481 1.32735 1.29939 1.19854 0.96473 0.92839 0.85262 1.21412 1.06010 1.01897 0.93585 1.21255 0.97567 0.95153 0.97033 1.21418 1.00794 0.95990 0.99683 1.21326 0.97536 1.00195 0.90925 1.20717 1.04379 0.92787 1.00641 1.20871 0.99606 0.90625 0.96999 1.20414 0.92408 0.97636 1.13523 0.94871 0.92416 0.92786 0.91987 0.85683 0.85391 0.86986 0.84445 0.83123 0.82272 0.84434 0.85428 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.12 8.33 127.77 1.06 7.18 16 2 N -0.47 -23.17 3.12 -535.08 -1.67 -24.84 16 3 C -0.33 -17.11 8.97 84.03 0.75 -16.36 16 4 H 0.09 4.77 6.23 -2.91 -0.02 4.75 16 5 C -0.01 -0.74 5.07 84.85 0.43 -0.31 16 6 N -0.90 -47.74 10.78 21.64 0.23 -47.51 16 7 Si 0.99 40.25 29.57 68.60 2.03 42.27 16 8 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 9 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 10 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 11 C 0.19 8.92 6.52 38.35 0.25 9.17 16 12 C -0.23 -9.20 9.20 22.41 0.21 -8.99 16 13 C -0.06 -2.38 9.18 22.35 0.21 -2.17 16 14 C -0.05 -1.84 4.29 22.55 0.10 -1.74 16 15 O -0.26 -9.52 9.98 -35.90 -0.36 -9.88 16 16 C 0.10 3.13 6.62 22.52 0.15 3.28 16 17 C -0.21 -6.43 9.00 22.37 0.20 -6.23 16 18 C -0.09 -2.22 10.04 22.25 0.22 -2.00 16 19 C -0.16 -3.15 10.04 22.29 0.22 -2.93 16 20 C -0.08 -1.61 10.04 22.25 0.22 -1.38 16 21 C -0.17 -4.21 9.99 22.37 0.22 -3.98 16 22 C -0.06 -2.40 9.98 22.35 0.22 -2.17 16 23 C -0.22 -9.39 9.26 22.42 0.21 -9.18 16 24 H 0.03 1.60 7.83 -2.39 -0.02 1.58 16 25 H 0.06 2.79 6.77 -2.38 -0.02 2.78 16 26 H 0.05 2.12 6.45 -2.39 -0.02 2.11 16 27 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 28 H 0.13 4.69 6.23 -2.91 -0.02 4.67 16 29 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.11 3.84 6.48 -2.91 -0.02 3.82 16 31 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.13 4.44 8.06 -2.91 -0.02 4.41 16 36 H 0.12 5.12 6.20 -2.91 -0.02 5.11 16 Total: -1.00 -58.28 304.15 6.00 -52.28 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 1.09 Total: 25.50 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 4.68 Total: -37.82 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -1.44 Total: -72.35 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.36 Total: -9.88 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.27 kcal Total: -58.28 6.00 -52.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038351487.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.533 kcal (2) G-P(sol) polarization free energy of solvation -58.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds