Wall clock time and date at job start Mon Mar 30 2020 00:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37092 * 119.99865 * 2 1 4 4 H 1.08002 * 119.99788 * 204.39370 * 3 2 1 5 5 C 1.38954 * 120.00292 * 24.39374 * 3 2 1 6 6 N 1.31414 * 119.99781 * 12.64520 * 5 3 2 7 7 Si 1.86795 * 120.00292 * 192.64323 * 5 3 2 8 8 H 1.48498 * 109.47145 * 59.99924 * 7 5 3 9 9 H 1.48493 * 109.47476 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47273 * 300.00202 * 7 5 3 11 11 C 1.34772 * 120.00202 * 179.97438 * 2 1 3 12 12 O 1.21288 * 120.00434 * 180.02562 * 11 2 1 13 13 C 1.50708 * 119.99897 * 359.97438 * 11 2 1 14 14 C 1.50698 * 109.46952 * 180.02562 * 13 11 2 15 15 C 1.36134 * 120.17260 * 264.72622 * 14 13 11 16 16 C 1.39331 * 120.99108 * 180.32908 * 15 14 13 17 17 C 1.36131 * 120.98952 * 359.92327 * 16 15 14 18 18 C 1.40503 * 119.64741 * 0.04796 * 17 16 15 19 19 C 1.40548 * 121.27616 * 180.02562 * 18 17 16 20 20 C 1.36087 * 119.65134 * 179.97438 * 19 18 17 21 21 C 1.39381 * 120.99354 * 0.02562 * 20 19 18 22 22 C 1.36093 * 120.99174 * 359.96315 * 21 20 19 23 23 C 1.40500 * 120.17366 * 85.00469 * 14 13 11 24 24 H 1.09004 * 109.46528 * 265.86331 * 1 2 3 25 25 H 1.08994 * 109.46788 * 25.86104 * 1 2 3 26 26 H 1.08996 * 109.46687 * 145.86370 * 1 2 3 27 27 H 0.96993 * 119.99754 * 180.02562 * 6 5 3 28 28 H 1.09003 * 109.46699 * 60.00301 * 13 11 2 29 29 H 1.08993 * 109.47135 * 300.00298 * 13 11 2 30 30 H 1.08001 * 119.50506 * 0.27570 * 15 14 13 31 31 H 1.08003 * 119.50653 * 179.97438 * 16 15 14 32 32 H 1.07997 * 120.17409 * 180.02562 * 17 16 15 33 33 H 1.07999 * 120.17660 * 359.94637 * 19 18 17 34 34 H 1.07999 * 119.50230 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.50407 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.17050 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2290 -0.3863 5 6 1.5488 2.3369 0.4970 6 7 0.4346 2.2491 1.1882 7 14 2.3236 4.0073 0.1826 8 1 2.4039 4.2482 -1.2805 9 1 1.4933 5.0647 0.8130 10 1 3.6895 4.0369 0.7648 11 6 2.1390 -1.1671 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3855 -2.4723 0.0017 14 6 2.3648 -3.6177 0.0027 15 6 2.7272 -4.2091 -1.1687 16 6 3.6260 -5.2736 -1.1869 17 6 4.1691 -5.7523 -0.0340 18 6 3.8193 -5.1669 1.1944 19 6 4.3596 -5.6334 2.4051 20 6 3.9982 -5.0416 3.5760 21 6 3.0979 -3.9777 3.5946 22 6 2.5547 -3.4992 2.4421 23 6 2.9041 -4.0846 1.2132 24 1 -0.3632 -0.0741 1.0251 25 1 -0.3633 0.9247 -0.4482 26 1 -0.3632 -0.8506 -0.5767 27 1 0.0144 3.0516 1.5348 28 1 0.7585 -2.5306 -0.8881 29 1 0.7591 -2.5295 0.8919 30 1 2.3112 -3.8483 -2.0977 31 1 3.8965 -5.7253 -2.1299 32 1 4.8648 -6.5778 -0.0635 33 1 5.0577 -6.4575 2.4063 34 1 4.4145 -5.4022 4.5050 35 1 2.8275 -3.5261 4.5377 36 1 1.8587 -2.6739 2.4719 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049116.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:27 Heat of formation + Delta-G solvation = 14.173637 kcal Electronic energy + Delta-G solvation = -19870.619631 eV Core-core repulsion = 16898.694913 eV Total energy + Delta-G solvation = -2971.924718 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.24821 -38.30323 -36.22787 -34.68187 -33.26121 -31.60107 -30.01310 -29.78994 -27.40438 -26.03497 -24.19516 -23.01657 -22.67542 -20.87762 -18.73300 -17.24682 -16.84330 -16.62197 -16.00949 -15.86053 -14.72626 -14.46454 -14.22670 -13.88060 -13.72895 -13.23395 -13.17886 -12.93542 -12.48001 -12.18891 -11.95116 -11.60413 -11.47849 -11.24860 -11.14367 -10.99325 -10.85026 -10.62628 -10.43840 -10.37361 -10.20769 -9.52879 -8.98578 -8.38158 -8.29429 -7.63643 -7.50278 -6.30726 -3.86706 0.84324 1.33308 2.36810 3.20051 3.25234 3.28000 3.30917 3.91987 4.15354 4.40667 4.80794 5.00667 5.04262 5.13099 5.14496 5.22826 5.32283 5.41884 5.62468 5.67682 5.70893 5.85534 5.89094 5.95933 6.14329 6.29305 6.33810 6.42855 6.52088 6.54798 6.73402 6.80400 6.84380 7.00175 7.15422 7.18852 7.32183 7.58244 8.16387 8.51297 9.21480 9.44208 10.01553 10.74315 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025400 B = 0.005121 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.104430 B = 5466.649342 C = 5866.359166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.449 5.449 3 C -0.305 4.305 4 H 0.096 0.904 5 C 0.030 3.970 6 N -0.884 5.884 7 Si 0.925 3.075 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.451 3.549 12 O -0.578 6.578 13 C -0.102 4.102 14 C -0.023 4.023 15 C -0.120 4.120 16 C -0.107 4.107 17 C -0.124 4.124 18 C -0.049 4.049 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.128 4.128 22 C -0.087 4.087 23 C -0.036 4.036 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.025 0.975 27 H 0.267 0.733 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 -13.588 0.353 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.168 5.168 3 C -0.433 4.433 4 H 0.114 0.886 5 C -0.172 4.172 6 N -0.523 5.523 7 Si 0.752 3.248 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.239 3.761 12 O -0.462 6.462 13 C -0.142 4.142 14 C -0.023 4.023 15 C -0.138 4.138 16 C -0.125 4.125 17 C -0.142 4.142 18 C -0.049 4.049 19 C -0.134 4.134 20 C -0.135 4.135 21 C -0.146 4.146 22 C -0.104 4.104 23 C -0.036 4.036 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.677 -13.416 0.449 13.441 hybrid contribution 0.168 1.037 -0.039 1.051 sum 0.845 -12.379 0.410 12.415 Atomic orbital electron populations 1.21487 0.81347 0.99922 1.00552 1.43564 1.05369 1.04649 1.63249 1.19581 1.00564 0.84161 1.38969 0.88618 1.25324 0.96658 1.00058 0.95201 1.69979 1.19257 1.29660 1.33448 0.86011 0.79056 0.81033 0.78682 1.19951 1.20959 1.19829 1.19861 0.88055 0.84309 0.83882 1.90551 1.13789 1.86940 1.54898 1.20716 0.97277 0.92456 1.03745 1.19323 0.96216 0.94346 0.92461 1.20640 0.98900 0.96723 0.97518 1.20742 0.97061 0.96715 0.97989 1.20871 1.00863 1.00564 0.91856 1.18030 0.97079 0.95911 0.93880 1.20914 1.00276 1.00335 0.91873 1.20777 0.98158 0.96672 0.97872 1.20799 0.98156 0.97328 0.98334 1.21150 0.99262 0.98357 0.91677 1.17891 0.96869 0.95393 0.93455 0.93037 0.90696 0.95628 0.92256 0.89330 0.89204 0.86279 0.86350 0.86116 0.86066 0.86445 0.86237 0.85501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.44 8.44 59.85 0.51 2.94 16 2 N -0.45 -11.51 3.01 -122.19 -0.37 -11.88 16 3 C -0.30 -8.57 9.24 -14.93 -0.14 -8.71 16 4 H 0.10 2.83 7.45 -52.49 -0.39 2.44 16 5 C 0.03 0.81 5.04 -17.47 -0.09 0.72 16 6 N -0.88 -23.59 10.83 55.50 0.60 -22.99 16 7 Si 0.93 20.94 29.57 -169.99 -5.03 15.92 16 8 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 C 0.45 11.04 7.62 -10.98 -0.08 10.95 16 12 O -0.58 -16.36 15.75 5.55 0.09 -16.27 16 13 C -0.10 -1.90 3.83 -29.03 -0.11 -2.02 16 14 C -0.02 -0.42 4.38 -104.53 -0.46 -0.88 16 15 C -0.12 -1.96 9.57 -39.93 -0.38 -2.34 16 16 C -0.11 -1.53 9.95 -39.93 -0.40 -1.93 16 17 C -0.12 -1.76 9.77 -39.49 -0.39 -2.15 16 18 C -0.05 -0.80 5.74 -106.83 -0.61 -1.41 16 19 C -0.12 -1.61 9.77 -39.48 -0.39 -2.00 16 20 C -0.12 -1.58 9.95 -39.93 -0.40 -1.98 16 21 C -0.13 -1.94 9.95 -39.93 -0.40 -2.34 16 22 C -0.09 -1.53 9.28 -39.48 -0.37 -1.90 16 23 C -0.04 -0.66 5.74 -106.84 -0.61 -1.27 16 24 H 0.05 1.15 7.83 -51.93 -0.41 0.75 16 25 H 0.07 1.75 6.80 -51.93 -0.35 1.39 16 26 H 0.03 0.46 6.61 -51.93 -0.34 0.11 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.09 1.43 7.30 -51.93 -0.38 1.06 16 29 H 0.09 1.54 6.68 -51.93 -0.35 1.20 16 30 H 0.12 1.74 8.05 -52.49 -0.42 1.32 16 31 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 36 H 0.13 2.30 6.49 -52.49 -0.34 1.96 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -32.38 304.56 -8.66 -41.04 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -4.23 Total: 3.90 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -4.31 Total: -14.30 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.23 Total: -34.86 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.09 Total: -16.27 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.38 -8.66 -41.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049116.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.210 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds