Wall clock time and date at job start Mon Mar 30 2020 00:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37092 * 119.99865 * 2 1 4 4 H 1.08002 * 119.99788 * 204.39370 * 3 2 1 5 5 C 1.38954 * 120.00292 * 24.39374 * 3 2 1 6 6 N 1.31414 * 119.99781 * 12.64520 * 5 3 2 7 7 Si 1.86795 * 120.00292 * 192.64323 * 5 3 2 8 8 H 1.48498 * 109.47145 * 59.99924 * 7 5 3 9 9 H 1.48493 * 109.47476 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47273 * 300.00202 * 7 5 3 11 11 C 1.34772 * 120.00202 * 179.97438 * 2 1 3 12 12 O 1.21288 * 120.00434 * 180.02562 * 11 2 1 13 13 C 1.50708 * 119.99897 * 359.97438 * 11 2 1 14 14 C 1.50698 * 109.46952 * 180.02562 * 13 11 2 15 15 C 1.36134 * 120.17260 * 264.72622 * 14 13 11 16 16 C 1.39331 * 120.99108 * 180.32908 * 15 14 13 17 17 C 1.36131 * 120.98952 * 359.92327 * 16 15 14 18 18 C 1.40503 * 119.64741 * 0.04796 * 17 16 15 19 19 C 1.40548 * 121.27616 * 180.02562 * 18 17 16 20 20 C 1.36087 * 119.65134 * 179.97438 * 19 18 17 21 21 C 1.39381 * 120.99354 * 0.02562 * 20 19 18 22 22 C 1.36093 * 120.99174 * 359.96315 * 21 20 19 23 23 C 1.40500 * 120.17366 * 85.00469 * 14 13 11 24 24 H 1.09004 * 109.46528 * 265.86331 * 1 2 3 25 25 H 1.08994 * 109.46788 * 25.86104 * 1 2 3 26 26 H 1.08996 * 109.46687 * 145.86370 * 1 2 3 27 27 H 0.96993 * 119.99754 * 180.02562 * 6 5 3 28 28 H 1.09003 * 109.46699 * 60.00301 * 13 11 2 29 29 H 1.08993 * 109.47135 * 300.00298 * 13 11 2 30 30 H 1.08001 * 119.50506 * 0.27570 * 15 14 13 31 31 H 1.08003 * 119.50653 * 179.97438 * 16 15 14 32 32 H 1.07997 * 120.17409 * 180.02562 * 17 16 15 33 33 H 1.07999 * 120.17660 * 359.94637 * 19 18 17 34 34 H 1.07999 * 119.50230 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.50407 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.17050 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2290 -0.3863 5 6 1.5488 2.3369 0.4970 6 7 0.4346 2.2491 1.1882 7 14 2.3236 4.0073 0.1826 8 1 2.4039 4.2482 -1.2805 9 1 1.4933 5.0647 0.8130 10 1 3.6895 4.0369 0.7648 11 6 2.1390 -1.1671 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3855 -2.4723 0.0017 14 6 2.3648 -3.6177 0.0027 15 6 2.7272 -4.2091 -1.1687 16 6 3.6260 -5.2736 -1.1869 17 6 4.1691 -5.7523 -0.0340 18 6 3.8193 -5.1669 1.1944 19 6 4.3596 -5.6334 2.4051 20 6 3.9982 -5.0416 3.5760 21 6 3.0979 -3.9777 3.5946 22 6 2.5547 -3.4992 2.4421 23 6 2.9041 -4.0846 1.2132 24 1 -0.3632 -0.0741 1.0251 25 1 -0.3633 0.9247 -0.4482 26 1 -0.3632 -0.8506 -0.5767 27 1 0.0144 3.0516 1.5348 28 1 0.7585 -2.5306 -0.8881 29 1 0.7591 -2.5295 0.8919 30 1 2.3112 -3.8483 -2.0977 31 1 3.8965 -5.7253 -2.1299 32 1 4.8648 -6.5778 -0.0635 33 1 5.0577 -6.4575 2.4063 34 1 4.4145 -5.4022 4.5050 35 1 2.8275 -3.5261 4.5377 36 1 1.8587 -2.6739 2.4719 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049116.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:27 Heat of formation + Delta-G solvation = -3.748801 kcal Electronic energy + Delta-G solvation = -19871.396807 eV Core-core repulsion = 16898.694913 eV Total energy + Delta-G solvation = -2972.701893 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.49395 -40.11439 -37.41775 -36.62331 -34.61532 -33.60425 -31.17643 -31.05487 -28.93534 -27.82431 -26.08904 -24.19707 -23.82816 -22.26939 -20.43436 -18.87948 -18.38739 -17.88830 -17.77776 -17.09315 -16.57014 -16.07146 -15.94060 -15.25488 -15.07428 -14.58635 -14.37330 -14.23957 -14.02823 -13.70257 -13.49768 -13.32861 -13.13187 -12.79965 -12.72569 -12.63441 -12.30724 -12.17267 -12.13414 -11.75312 -11.58771 -11.00553 -10.78729 -10.31800 -9.66548 -9.45972 -8.69886 -8.34176 -5.99592 -0.32907 0.16464 1.16639 1.37690 1.39173 1.49815 2.03580 2.13623 2.28707 3.04631 3.08260 3.33196 3.64862 3.90516 3.99901 4.06753 4.15460 4.22439 4.34028 4.40346 4.50908 4.54475 4.60067 4.68825 4.72393 4.93772 5.01313 5.12355 5.26737 5.35062 5.36539 5.40915 5.43403 5.56672 5.65727 5.80003 5.99653 6.10343 6.19577 6.49323 7.17223 7.46788 8.04834 8.68409 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025400 B = 0.005121 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.104430 B = 5466.649342 C = 5866.359166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.465 5.465 3 C -0.344 4.344 4 H 0.067 0.933 5 C -0.002 4.002 6 N -0.897 5.897 7 Si 0.988 3.012 8 H -0.266 1.266 9 H -0.268 1.268 10 H -0.279 1.279 11 C 0.446 3.554 12 O -0.625 6.625 13 C -0.086 4.086 14 C -0.063 4.063 15 C -0.123 4.123 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.075 4.075 19 C -0.110 4.110 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.060 4.060 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.273 0.727 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.153 0.847 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.136 0.864 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 -15.290 0.312 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.185 5.185 3 C -0.472 4.472 4 H 0.085 0.915 5 C -0.203 4.203 6 N -0.535 5.535 7 Si 0.811 3.189 8 H -0.191 1.191 9 H -0.193 1.193 10 H -0.205 1.205 11 C 0.236 3.764 12 O -0.512 6.512 13 C -0.126 4.126 14 C -0.063 4.063 15 C -0.141 4.141 16 C -0.135 4.135 17 C -0.133 4.133 18 C -0.075 4.075 19 C -0.127 4.127 20 C -0.140 4.140 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.060 4.060 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.117 0.883 30 H 0.148 0.852 31 H 0.171 0.829 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.153 0.847 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.195 -15.127 0.409 15.179 hybrid contribution 0.038 1.484 0.022 1.484 sum 1.233 -13.643 0.431 13.705 Atomic orbital electron populations 1.21455 0.79414 1.00902 1.00583 1.43836 1.06694 1.04530 1.63408 1.19525 1.00313 0.86235 1.41121 0.91498 1.26061 0.97069 1.02848 0.94346 1.70051 1.19689 1.30793 1.33005 0.85091 0.77919 0.76977 0.78915 1.19120 1.19267 1.20497 1.20800 0.87875 0.85783 0.81976 1.90495 1.16122 1.87920 1.56627 1.20574 0.97251 0.89480 1.05250 1.19410 0.97947 0.95305 0.93632 1.20974 0.98873 0.97041 0.97239 1.21128 0.96453 0.96171 0.99752 1.21347 1.00319 1.00675 0.90916 1.18463 0.97243 0.95890 0.95908 1.21382 0.99763 1.00625 0.90938 1.21176 0.97478 0.95842 0.99552 1.21133 0.97658 0.97494 0.98132 1.21141 1.00990 0.99256 0.93041 1.18164 0.97867 0.96546 0.93443 0.93921 0.92317 0.91373 0.91697 0.86765 0.88329 0.85196 0.82939 0.82352 0.82327 0.82841 0.84659 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.33 8.44 127.77 1.08 6.41 16 2 N -0.47 -24.70 3.01 -658.88 -1.98 -26.68 16 3 C -0.34 -20.13 9.24 84.04 0.78 -19.35 16 4 H 0.07 4.20 7.45 -2.91 -0.02 4.18 16 5 C 0.00 -0.08 5.04 84.93 0.43 0.34 16 6 N -0.90 -48.33 10.83 21.66 0.23 -48.10 16 7 Si 0.99 43.39 29.57 68.60 2.03 45.42 16 8 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 9 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 C 0.45 22.67 7.62 87.66 0.67 23.34 16 12 O -0.62 -37.16 15.75 -3.05 -0.05 -37.20 16 13 C -0.09 -3.28 3.83 29.10 0.11 -3.17 16 14 C -0.06 -2.33 4.38 -19.80 -0.09 -2.41 16 15 C -0.12 -3.95 9.57 22.04 0.21 -3.74 16 16 C -0.12 -3.09 9.95 22.04 0.22 -2.87 16 17 C -0.11 -2.95 9.77 22.33 0.22 -2.74 16 18 C -0.08 -2.32 5.74 -21.30 -0.12 -2.45 16 19 C -0.11 -2.73 9.77 22.33 0.22 -2.51 16 20 C -0.12 -3.04 9.95 22.04 0.22 -2.82 16 21 C -0.13 -3.80 9.95 22.05 0.22 -3.58 16 22 C -0.13 -4.64 9.28 22.33 0.21 -4.43 16 23 C -0.06 -2.23 5.74 -21.30 -0.12 -2.35 16 24 H 0.04 1.94 7.83 -2.38 -0.02 1.92 16 25 H 0.06 2.77 6.80 -2.39 -0.02 2.76 16 26 H 0.07 2.40 6.61 -2.39 -0.02 2.38 16 27 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 28 H 0.11 3.63 7.30 -2.39 -0.02 3.62 16 29 H 0.10 3.52 6.68 -2.39 -0.02 3.50 16 30 H 0.13 3.69 8.05 -2.91 -0.02 3.67 16 31 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 32 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 36 H 0.11 4.13 6.49 -2.91 -0.02 4.11 16 Total: -1.00 -73.70 304.56 5.56 -68.14 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 1.09 Total: 20.74 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 4.24 Total: -22.32 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -1.75 Total: -74.78 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -0.05 Total: -37.20 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -73.70 5.56 -68.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049116.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.390 kcal (2) G-P(sol) polarization free energy of solvation -73.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds