Wall clock time and date at job start Mon Mar 30 2020 00:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37093 * 120.00006 * 2 1 4 4 H 1.07992 * 120.00118 * 204.39165 * 3 2 1 5 5 C 1.38953 * 120.00037 * 24.39502 * 3 2 1 6 6 N 1.31410 * 120.00315 * 12.64174 * 5 3 2 7 7 Si 1.86798 * 119.99863 * 192.63642 * 5 3 2 8 8 H 1.48503 * 109.47141 * 90.00383 * 7 5 3 9 9 H 1.48507 * 109.47341 * 210.00027 * 7 5 3 10 10 H 1.48506 * 109.47394 * 330.00062 * 7 5 3 11 11 C 1.34774 * 119.99877 * 179.97438 * 2 1 3 12 12 O 1.21287 * 120.00033 * 179.97438 * 11 2 1 13 13 C 1.50704 * 119.99715 * 0.02562 * 11 2 1 14 14 C 1.50708 * 109.46769 * 179.97438 * 13 11 2 15 15 C 1.39376 * 119.50131 * 270.29075 * 14 13 11 16 16 C 1.36099 * 120.98326 * 180.28059 * 15 14 13 17 17 C 1.40536 * 119.65253 * 359.70668 * 16 15 14 18 18 C 1.40545 * 121.28165 * 180.02562 * 17 16 15 19 19 C 1.36089 * 119.65336 * 180.02562 * 18 17 16 20 20 C 1.39373 * 120.98820 * 359.95844 * 19 18 17 21 21 C 1.36092 * 120.99038 * 0.02562 * 20 19 18 22 22 C 1.40531 * 119.65739 * 0.02562 * 21 20 19 23 23 C 1.36092 * 119.50378 * 90.00236 * 14 13 11 24 24 H 1.09004 * 109.47534 * 265.86428 * 1 2 3 25 25 H 1.09009 * 109.46832 * 25.86013 * 1 2 3 26 26 H 1.08999 * 109.47535 * 145.85859 * 1 2 3 27 27 H 0.96998 * 120.00583 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.47133 * 60.00424 * 13 11 2 29 29 H 1.08998 * 109.47431 * 299.99701 * 13 11 2 30 30 H 1.07995 * 119.51122 * 359.97438 * 15 14 13 31 31 H 1.07999 * 120.17524 * 179.73454 * 16 15 14 32 32 H 1.07998 * 120.17087 * 0.02952 * 18 17 16 33 33 H 1.08002 * 119.50423 * 179.97438 * 19 18 17 34 34 H 1.08000 * 119.50071 * 180.02562 * 20 19 18 35 35 H 1.08001 * 120.16906 * 180.02562 * 21 20 19 36 36 H 1.07994 * 120.17296 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1581 1.2290 -0.3862 5 6 1.5488 2.3369 0.4970 6 7 0.4346 2.2492 1.1882 7 14 2.3238 4.0072 0.1828 8 1 1.7870 4.5721 -1.0814 9 1 2.0035 4.9213 1.3086 10 1 3.7970 3.8564 0.0714 11 6 2.1389 -1.1672 0.0005 12 8 3.3517 -1.1672 0.0001 13 6 1.3853 -2.4723 0.0005 14 6 2.3646 -3.6178 0.0005 15 6 2.8153 -4.1355 -1.2125 16 6 3.6952 -5.1732 -1.2477 17 6 4.1629 -5.7293 -0.0448 18 6 5.0722 -6.8010 -0.0413 19 6 5.5031 -7.3144 1.1431 20 6 5.0569 -6.7929 2.3561 21 6 4.1769 -5.7553 2.3914 22 6 3.7086 -5.1995 1.1886 23 6 2.8001 -4.1272 1.1850 24 1 -0.3634 -0.0741 1.0250 25 1 -0.3633 0.9248 -0.4483 26 1 -0.3634 -0.8505 -0.5767 27 1 0.0143 3.0517 1.5349 28 1 0.7590 -2.5302 -0.8897 29 1 0.7583 -2.5298 0.8903 30 1 2.4572 -3.7101 -2.1383 31 1 4.0325 -5.5669 -2.1951 32 1 5.4271 -7.2148 -0.9736 33 1 6.2015 -8.1382 1.1430 34 1 5.4148 -7.2185 3.2819 35 1 3.8401 -5.3612 3.3389 36 1 2.4454 -3.7131 2.1172 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049147.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:25 Heat of formation + Delta-G solvation = 11.413817 kcal Electronic energy + Delta-G solvation = -19375.041406 eV Core-core repulsion = 16402.997014 eV Total energy + Delta-G solvation = -2972.044393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.19900 -38.46892 -36.41516 -34.58614 -32.71217 -31.77652 -31.12331 -29.30375 -27.37152 -26.03636 -24.24593 -23.10881 -21.95847 -21.71204 -18.93547 -17.11736 -16.84629 -16.69823 -15.96680 -15.71693 -14.69345 -14.53753 -14.32901 -14.09720 -13.73279 -13.34662 -13.23499 -13.10552 -12.46727 -12.25187 -12.01976 -11.61109 -11.49190 -11.26418 -11.08327 -10.92330 -10.88996 -10.70820 -10.58853 -10.33724 -10.21876 -9.74541 -8.99477 -8.48325 -8.19226 -7.64851 -7.62092 -6.30857 -3.87090 0.75728 1.23312 2.29138 3.17243 3.18911 3.26059 3.32088 3.92333 4.15112 4.33674 4.75186 4.92820 4.96925 5.05362 5.12105 5.17581 5.25360 5.39678 5.50699 5.56964 5.66495 5.84432 5.95566 5.96586 6.03618 6.19217 6.26332 6.35680 6.45505 6.48383 6.58947 6.77733 6.84578 6.97939 7.02928 7.19438 7.25280 7.58285 8.16585 8.51126 9.21313 9.44318 10.01380 10.74200 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034320 B = 0.003981 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.662556 B = 7031.153557 C = 7147.506506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.449 5.449 3 C -0.305 4.305 4 H 0.097 0.903 5 C 0.030 3.970 6 N -0.884 5.884 7 Si 0.925 3.075 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.450 3.550 12 O -0.581 6.581 13 C -0.100 4.100 14 C -0.038 4.038 15 C -0.092 4.092 16 C -0.115 4.115 17 C -0.056 4.056 18 C -0.106 4.106 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.103 4.103 22 C -0.046 4.046 23 C -0.099 4.099 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.025 0.975 27 H 0.267 0.733 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -15.392 -1.161 15.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.169 5.169 3 C -0.433 4.433 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.523 5.523 7 Si 0.752 3.248 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.238 3.762 12 O -0.465 6.465 13 C -0.140 4.140 14 C -0.038 4.038 15 C -0.110 4.110 16 C -0.133 4.133 17 C -0.056 4.056 18 C -0.124 4.124 19 C -0.145 4.145 20 C -0.144 4.144 21 C -0.121 4.121 22 C -0.046 4.046 23 C -0.117 4.117 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.870 -15.222 -1.065 15.374 hybrid contribution 0.129 1.031 -0.006 1.039 sum 1.999 -14.191 -1.071 14.371 Atomic orbital electron populations 1.21483 0.81319 0.99902 1.00559 1.43580 1.05409 1.04694 1.63183 1.19649 1.00604 0.84169 1.38901 0.88519 1.25332 0.96671 1.00085 0.95188 1.69987 1.19301 1.29550 1.33493 0.85941 0.79686 0.81367 0.77813 1.20393 1.20958 1.19380 1.19917 0.88065 0.84423 0.83782 1.90546 1.13844 1.87011 1.55078 1.20725 0.97214 0.92378 1.03722 1.19199 0.96798 0.94754 0.93048 1.20740 0.97033 0.95580 0.97622 1.20892 0.98264 0.97402 0.96761 1.18061 0.97839 0.96642 0.93080 1.20976 0.97187 0.95993 0.98226 1.20748 1.00677 1.00477 0.92592 1.20759 0.98445 0.97400 0.97822 1.21039 0.97518 0.96333 0.97164 1.18056 0.97437 0.96234 0.92868 1.20833 0.97136 0.95559 0.98131 0.93039 0.90731 0.95597 0.92302 0.89476 0.89260 0.86161 0.85878 0.85992 0.86476 0.86401 0.85771 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.45 8.44 59.85 0.51 2.96 16 2 N -0.45 -11.55 3.01 -122.19 -0.37 -11.92 16 3 C -0.31 -8.60 9.24 -14.93 -0.14 -8.74 16 4 H 0.10 2.87 7.45 -52.49 -0.39 2.48 16 5 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 6 N -0.88 -23.67 10.83 55.50 0.60 -23.07 16 7 Si 0.93 20.94 29.57 -169.99 -5.03 15.91 16 8 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 C 0.45 11.01 7.62 -10.98 -0.08 10.93 16 12 O -0.58 -16.39 15.75 5.55 0.09 -16.30 16 13 C -0.10 -1.84 4.40 -29.03 -0.13 -1.96 16 14 C -0.04 -0.67 4.34 -104.97 -0.46 -1.12 16 15 C -0.09 -1.49 9.59 -39.93 -0.38 -1.87 16 16 C -0.12 -1.69 9.77 -39.48 -0.39 -2.08 16 17 C -0.06 -0.85 5.74 -106.83 -0.61 -1.47 16 18 C -0.11 -1.33 9.77 -39.48 -0.39 -1.72 16 19 C -0.13 -1.46 9.95 -39.93 -0.40 -1.86 16 20 C -0.13 -1.50 9.95 -39.93 -0.40 -1.90 16 21 C -0.10 -1.40 9.77 -39.49 -0.39 -1.79 16 22 C -0.05 -0.74 5.74 -106.84 -0.61 -1.35 16 23 C -0.10 -1.69 9.37 -39.49 -0.37 -2.06 16 24 H 0.05 1.16 7.83 -51.93 -0.41 0.75 16 25 H 0.07 1.74 6.80 -51.92 -0.35 1.39 16 26 H 0.03 0.46 6.61 -51.93 -0.34 0.12 16 27 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.09 1.38 7.35 -51.93 -0.38 1.00 16 29 H 0.09 1.49 8.03 -51.93 -0.42 1.08 16 30 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 308.00 15.07 4.64 4.64 Total: -1.00 -32.45 308.00 -8.77 -41.22 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.39 Total: 2.84 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -4.32 Total: -13.33 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.23 Total: -34.99 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.09 Total: -16.30 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.45 -8.77 -41.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049147.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.637 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds