Wall clock time and date at job start Mon Mar 30 2020 00:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37093 * 120.00006 * 2 1 4 4 H 1.07992 * 120.00118 * 204.39165 * 3 2 1 5 5 C 1.38953 * 120.00037 * 24.39502 * 3 2 1 6 6 N 1.31410 * 120.00315 * 12.64174 * 5 3 2 7 7 Si 1.86798 * 119.99863 * 192.63642 * 5 3 2 8 8 H 1.48503 * 109.47141 * 90.00383 * 7 5 3 9 9 H 1.48507 * 109.47341 * 210.00027 * 7 5 3 10 10 H 1.48506 * 109.47394 * 330.00062 * 7 5 3 11 11 C 1.34774 * 119.99877 * 179.97438 * 2 1 3 12 12 O 1.21287 * 120.00033 * 179.97438 * 11 2 1 13 13 C 1.50704 * 119.99715 * 0.02562 * 11 2 1 14 14 C 1.50708 * 109.46769 * 179.97438 * 13 11 2 15 15 C 1.39376 * 119.50131 * 270.29075 * 14 13 11 16 16 C 1.36099 * 120.98326 * 180.28059 * 15 14 13 17 17 C 1.40536 * 119.65253 * 359.70668 * 16 15 14 18 18 C 1.40545 * 121.28165 * 180.02562 * 17 16 15 19 19 C 1.36089 * 119.65336 * 180.02562 * 18 17 16 20 20 C 1.39373 * 120.98820 * 359.95844 * 19 18 17 21 21 C 1.36092 * 120.99038 * 0.02562 * 20 19 18 22 22 C 1.40531 * 119.65739 * 0.02562 * 21 20 19 23 23 C 1.36092 * 119.50378 * 90.00236 * 14 13 11 24 24 H 1.09004 * 109.47534 * 265.86428 * 1 2 3 25 25 H 1.09009 * 109.46832 * 25.86013 * 1 2 3 26 26 H 1.08999 * 109.47535 * 145.85859 * 1 2 3 27 27 H 0.96998 * 120.00583 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.47133 * 60.00424 * 13 11 2 29 29 H 1.08998 * 109.47431 * 299.99701 * 13 11 2 30 30 H 1.07995 * 119.51122 * 359.97438 * 15 14 13 31 31 H 1.07999 * 120.17524 * 179.73454 * 16 15 14 32 32 H 1.07998 * 120.17087 * 0.02952 * 18 17 16 33 33 H 1.08002 * 119.50423 * 179.97438 * 19 18 17 34 34 H 1.08000 * 119.50071 * 180.02562 * 20 19 18 35 35 H 1.08001 * 120.16906 * 180.02562 * 21 20 19 36 36 H 1.07994 * 120.17296 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1581 1.2290 -0.3862 5 6 1.5488 2.3369 0.4970 6 7 0.4346 2.2492 1.1882 7 14 2.3238 4.0072 0.1828 8 1 1.7870 4.5721 -1.0814 9 1 2.0035 4.9213 1.3086 10 1 3.7970 3.8564 0.0714 11 6 2.1389 -1.1672 0.0005 12 8 3.3517 -1.1672 0.0001 13 6 1.3853 -2.4723 0.0005 14 6 2.3646 -3.6178 0.0005 15 6 2.8153 -4.1355 -1.2125 16 6 3.6952 -5.1732 -1.2477 17 6 4.1629 -5.7293 -0.0448 18 6 5.0722 -6.8010 -0.0413 19 6 5.5031 -7.3144 1.1431 20 6 5.0569 -6.7929 2.3561 21 6 4.1769 -5.7553 2.3914 22 6 3.7086 -5.1995 1.1886 23 6 2.8001 -4.1272 1.1850 24 1 -0.3634 -0.0741 1.0250 25 1 -0.3633 0.9248 -0.4483 26 1 -0.3634 -0.8505 -0.5767 27 1 0.0143 3.0517 1.5349 28 1 0.7590 -2.5302 -0.8897 29 1 0.7583 -2.5298 0.8903 30 1 2.4572 -3.7101 -2.1383 31 1 4.0325 -5.5669 -2.1951 32 1 5.4271 -7.2148 -0.9736 33 1 6.2015 -8.1382 1.1430 34 1 5.4148 -7.2185 3.2819 35 1 3.8401 -5.3612 3.3389 36 1 2.4454 -3.7131 2.1172 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049147.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:25 Heat of formation + Delta-G solvation = -6.318470 kcal Electronic energy + Delta-G solvation = -19375.810336 eV Core-core repulsion = 16402.997014 eV Total energy + Delta-G solvation = -2972.813322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.35176 -40.24457 -37.62938 -36.53793 -33.94469 -33.60658 -32.46209 -30.39461 -28.88323 -27.79167 -26.10682 -24.20384 -23.19862 -22.80241 -20.69873 -18.87630 -18.21221 -17.87220 -17.71149 -16.94072 -16.55770 -16.01423 -15.85455 -15.55682 -15.04464 -14.57078 -14.42374 -14.21597 -14.08393 -13.73009 -13.48579 -13.32449 -13.11533 -12.90572 -12.65593 -12.50069 -12.30905 -12.16386 -12.04696 -11.78617 -11.66420 -11.00045 -10.84931 -10.36840 -9.66165 -9.38999 -8.73782 -8.34219 -5.99625 -0.31844 0.12585 1.18429 1.36505 1.39705 1.51918 2.03753 2.09101 2.29735 3.07613 3.09428 3.32101 3.69266 3.81056 4.01617 4.10201 4.17791 4.22278 4.34156 4.41095 4.50079 4.55588 4.62349 4.71985 4.74773 4.93273 5.03718 5.09210 5.21242 5.36868 5.37847 5.38876 5.44081 5.59786 5.68237 5.75762 5.98300 6.10539 6.17769 6.49678 7.17597 7.47681 8.05198 8.68619 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034320 B = 0.003981 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.662556 B = 7031.153557 C = 7147.506506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.466 5.466 3 C -0.345 4.345 4 H 0.067 0.933 5 C -0.002 4.002 6 N -0.897 5.897 7 Si 0.988 3.012 8 H -0.263 1.263 9 H -0.273 1.273 10 H -0.278 1.278 11 C 0.442 3.558 12 O -0.628 6.628 13 C -0.085 4.085 14 C -0.061 4.061 15 C -0.116 4.116 16 C -0.110 4.110 17 C -0.078 4.078 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.069 4.069 23 C -0.118 4.118 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.273 0.727 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.130 0.870 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.133 0.867 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.814 -17.026 -1.407 17.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.185 5.185 3 C -0.473 4.473 4 H 0.085 0.915 5 C -0.203 4.203 6 N -0.535 5.535 7 Si 0.811 3.189 8 H -0.188 1.188 9 H -0.198 1.198 10 H -0.203 1.203 11 C 0.232 3.768 12 O -0.515 6.515 13 C -0.125 4.125 14 C -0.062 4.062 15 C -0.134 4.134 16 C -0.127 4.127 17 C -0.078 4.078 18 C -0.129 4.129 19 C -0.141 4.141 20 C -0.136 4.136 21 C -0.144 4.144 22 C -0.069 4.069 23 C -0.136 4.136 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.133 0.867 29 H 0.122 0.878 30 H 0.148 0.852 31 H 0.172 0.828 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.166 0.834 35 H 0.151 0.849 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.222 -16.866 -1.308 17.062 hybrid contribution 0.094 1.409 0.141 1.419 sum 2.315 -15.457 -1.167 15.673 Atomic orbital electron populations 1.21461 0.79303 1.00942 1.00635 1.43862 1.06781 1.04552 1.63315 1.19585 1.00349 0.86287 1.41082 0.91461 1.26063 0.97071 1.02863 0.94325 1.70054 1.19723 1.30724 1.33047 0.85022 0.78202 0.77155 0.78484 1.18840 1.19770 1.20334 1.20925 0.87921 0.85983 0.81957 1.90497 1.16210 1.87997 1.56805 1.20624 0.97150 0.89067 1.05643 1.19274 0.97757 0.95115 0.94021 1.20922 0.98325 0.96751 0.97435 1.21269 0.96977 0.96414 0.98064 1.18440 0.98729 0.97741 0.92878 1.21335 0.96363 0.95097 1.00130 1.21226 1.00283 1.00733 0.91891 1.21201 0.96789 0.96049 0.99562 1.21260 0.98749 0.97510 0.96870 1.18335 0.97750 0.96387 0.94434 1.20979 0.98059 0.96572 0.97960 0.93878 0.92431 0.91164 0.91698 0.86712 0.87787 0.85219 0.82849 0.83176 0.82929 0.83368 0.84919 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.26 8.44 127.77 1.08 6.34 16 2 N -0.47 -24.55 3.01 -658.88 -1.98 -26.54 16 3 C -0.34 -20.14 9.24 84.04 0.78 -19.36 16 4 H 0.07 4.22 7.45 -2.91 -0.02 4.20 16 5 C 0.00 -0.08 5.04 84.93 0.43 0.35 16 6 N -0.90 -48.18 10.83 21.66 0.23 -47.95 16 7 Si 0.99 43.26 29.57 68.60 2.03 45.28 16 8 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 C 0.44 22.25 7.62 87.66 0.67 22.91 16 12 O -0.63 -37.08 15.75 -3.05 -0.05 -37.13 16 13 C -0.09 -3.13 4.40 29.11 0.13 -3.00 16 14 C -0.06 -2.22 4.34 -20.09 -0.09 -2.30 16 15 C -0.12 -3.77 9.59 22.05 0.21 -3.56 16 16 C -0.11 -3.11 9.77 22.33 0.22 -2.89 16 17 C -0.08 -2.28 5.74 -21.30 -0.12 -2.40 16 18 C -0.11 -2.49 9.77 22.33 0.22 -2.27 16 19 C -0.12 -2.40 9.95 22.04 0.22 -2.18 16 20 C -0.12 -2.49 9.95 22.04 0.22 -2.27 16 21 C -0.13 -3.35 9.77 22.33 0.22 -3.13 16 22 C -0.07 -2.22 5.74 -21.30 -0.12 -2.34 16 23 C -0.12 -4.18 9.37 22.33 0.21 -3.97 16 24 H 0.04 1.94 7.83 -2.39 -0.02 1.92 16 25 H 0.06 2.70 6.80 -2.38 -0.02 2.68 16 26 H 0.07 2.41 6.61 -2.39 -0.02 2.40 16 27 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 28 H 0.11 3.50 7.35 -2.39 -0.02 3.49 16 29 H 0.10 3.46 8.03 -2.39 -0.02 3.44 16 30 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 32 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -73.04 308.00 5.57 -67.47 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 1.08 Total: 18.93 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 4.26 Total: -20.08 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -1.75 Total: -74.48 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.05 Total: -37.13 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -73.04 5.57 -67.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049147.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.156 kcal (2) G-P(sol) polarization free energy of solvation -73.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds