Wall clock time and date at job start Mon Mar 30 2020 00:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46900 * 109.47389 * 2 1 4 4 C 1.46900 * 110.99836 * 287.98871 * 3 2 1 5 5 C 1.50702 * 109.46987 * 160.33328 * 4 3 2 6 6 H 1.07999 * 120.00330 * 4.69468 * 5 4 3 7 7 C 1.37883 * 119.99797 * 184.69949 * 5 4 3 8 8 N 1.31512 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99730 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47081 * 90.00430 * 9 7 5 11 11 H 1.48502 * 109.47091 * 209.99695 * 9 7 5 12 12 H 1.48499 * 109.47385 * 330.00135 * 9 7 5 13 13 C 1.46893 * 111.00407 * 164.03400 * 3 2 1 14 14 N 1.46509 * 109.46932 * 278.95538 * 13 3 2 15 15 C 1.35052 * 125.56520 * 90.02367 * 14 13 3 16 16 O 1.21301 * 127.29079 * 359.97438 * 15 14 13 17 17 C 1.49988 * 105.43243 * 179.97438 * 15 14 13 18 18 O 1.21294 * 127.28550 * 180.02562 * 17 15 14 19 19 N 1.35063 * 105.42877 * 359.97438 * 17 15 14 20 20 C 1.46500 * 125.56807 * 179.73239 * 19 17 15 21 21 C 1.34281 * 125.56288 * 269.96847 * 14 13 3 22 22 O 1.21477 * 124.29950 * 0.07004 * 21 14 13 23 23 H 1.09005 * 109.47376 * 179.24903 * 1 2 3 24 24 H 1.08996 * 109.47698 * 299.25375 * 1 2 3 25 25 H 1.09005 * 109.47126 * 59.25793 * 1 2 3 26 26 H 1.09006 * 109.47239 * 240.00276 * 2 1 3 27 27 H 1.08997 * 109.47316 * 120.00308 * 2 1 3 28 28 H 1.09001 * 109.47448 * 280.33362 * 4 3 2 29 29 H 1.08997 * 109.47302 * 40.33476 * 4 3 2 30 30 H 0.96996 * 120.00064 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47326 * 158.95735 * 13 3 2 32 32 H 1.08996 * 109.47670 * 38.95294 * 13 3 2 33 33 H 1.09001 * 109.46925 * 0.02562 * 20 19 17 34 34 H 1.08994 * 109.47165 * 120.02547 * 20 19 17 35 35 H 1.08998 * 109.47309 * 240.02837 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7958 2.0224 -1.3044 5 6 1.8465 3.5203 -1.1467 6 1 2.1018 3.9545 -0.1914 7 6 1.5669 4.3366 -2.2223 8 7 1.2556 3.8080 -3.3855 9 14 1.6291 6.1932 -2.0266 10 1 2.9992 6.6776 -2.3326 11 1 0.6616 6.8221 -2.9614 12 1 1.2760 6.5560 -0.6306 13 6 3.4382 1.4418 0.3772 14 7 3.5588 1.3719 1.8356 15 6 3.6832 0.2389 2.5601 16 8 3.7162 -0.8998 2.1436 17 6 3.7718 0.6865 3.9889 18 8 3.8920 -0.0135 4.9721 19 7 3.6905 2.0341 3.9490 20 6 3.7264 2.9248 5.1116 21 6 3.5649 2.4239 2.6701 22 8 3.4684 3.5811 2.3135 23 1 -0.3634 -1.0276 -0.0135 24 1 -0.3634 0.5022 0.8965 25 1 -0.3634 0.5253 -0.8833 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.5704 1.7041 -2.0021 29 1 0.8185 1.7305 -1.6886 30 1 1.0592 4.3822 -4.1422 31 1 3.8717 2.3764 0.0212 32 1 3.9676 0.6015 -0.0718 33 1 3.8299 2.3320 6.0204 34 1 4.5740 3.6043 5.0226 35 1 2.8022 3.5008 5.1568 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049389453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:21 Heat of formation + Delta-G solvation = -42.472577 kcal Electronic energy + Delta-G solvation = -21373.700286 eV Core-core repulsion = 17988.469941 eV Total energy + Delta-G solvation = -3385.230345 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.20816 -39.15343 -38.94139 -37.03404 -36.29120 -34.72722 -32.65142 -30.51065 -28.97719 -26.89796 -25.60006 -24.68253 -22.75917 -21.85037 -21.52389 -20.01444 -17.83685 -17.71987 -17.04282 -16.48122 -16.42081 -15.73918 -15.24208 -15.20389 -14.63192 -14.51533 -14.07107 -13.83376 -13.61924 -13.25782 -12.89416 -12.70993 -12.41553 -12.06937 -11.59391 -11.32226 -11.24534 -10.91061 -10.81376 -10.69262 -10.42934 -10.15631 -10.08168 -10.03714 -9.65342 -9.27822 -8.47736 -7.60771 -6.06577 -4.08039 0.31041 1.86917 2.13621 2.50992 2.73749 3.32504 3.38765 3.46086 3.91734 4.40115 4.55665 4.71682 5.09019 5.09264 5.19158 5.29517 5.37580 5.46962 5.57558 5.63654 5.88259 5.91369 6.03355 6.23007 6.45637 6.59100 6.70214 6.80055 6.99862 7.13440 7.20236 7.68714 7.75166 7.89014 8.03736 8.38164 9.02389 9.57430 11.03750 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020362 B = 0.006551 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.748315 B = 4273.321753 C = 5279.408063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.045 3.955 3 N -0.548 5.548 4 C 0.197 3.803 5 C -0.511 4.511 6 H 0.070 0.930 7 C 0.058 3.942 8 N -0.899 5.899 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.272 1.272 13 C 0.289 3.711 14 N -0.557 5.557 15 C 0.507 3.493 16 O -0.421 6.421 17 C 0.508 3.492 18 O -0.428 6.428 19 N -0.579 5.579 20 C 0.091 3.909 21 C 0.707 3.293 22 O -0.464 6.464 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.031 0.969 27 H 0.060 0.940 28 H -0.005 1.005 29 H 0.046 0.954 30 H 0.262 0.738 31 H 0.125 0.875 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.893 -4.476 12.920 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 N -0.275 5.275 4 C 0.073 3.927 5 C -0.549 4.549 6 H 0.088 0.912 7 C -0.144 4.144 8 N -0.539 5.539 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.196 1.196 13 C 0.079 3.921 14 N -0.307 5.307 15 C 0.287 3.713 16 O -0.287 6.287 17 C 0.289 3.711 18 O -0.294 6.294 19 N -0.330 5.330 20 C -0.049 4.049 21 C 0.409 3.591 22 O -0.329 6.329 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.013 0.987 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.589 -4.482 13.138 14.620 hybrid contribution 0.310 0.632 -0.568 0.904 sum 4.899 -3.850 12.570 14.029 Atomic orbital electron populations 1.21725 0.95027 1.00263 1.02929 1.22171 0.96539 0.89743 0.99881 1.61809 1.14463 1.15517 1.35662 1.19809 0.97214 0.94402 0.81288 1.21244 1.46572 0.90233 0.96873 0.91158 1.24960 0.95216 0.99070 0.95131 1.69948 1.47448 1.35399 1.01079 0.86491 0.77726 0.85135 0.78087 1.20711 1.21389 1.19636 1.22234 0.92442 1.04381 0.72994 1.47192 1.66112 1.06563 1.10799 1.20856 0.76904 0.85646 0.87923 1.90807 1.41956 1.18982 1.76935 1.21051 0.76362 0.82595 0.91045 1.90803 1.41613 1.59460 1.37495 1.46622 1.68471 1.08784 1.09102 1.21905 1.04489 0.93432 0.85063 1.15943 0.77306 0.85685 0.80118 1.91079 1.47727 1.16360 1.77769 0.93318 0.92641 0.91708 0.95025 0.92140 0.98678 0.93639 0.92880 0.85758 0.91135 0.88589 0.89817 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.99 37.15 0.37 -2.02 16 2 C 0.04 0.80 5.53 -3.83 -0.02 0.78 16 3 N -0.55 -11.12 4.48 -239.99 -1.07 -12.20 16 4 C 0.20 4.78 4.54 -4.98 -0.02 4.76 16 5 C -0.51 -13.78 8.52 -34.44 -0.29 -14.07 16 6 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -25.84 13.29 55.43 0.74 -25.10 16 9 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.29 5.13 5.46 -63.31 -0.35 4.78 16 14 N -0.56 -8.81 2.87 -124.51 -0.36 -9.17 16 15 C 0.51 7.52 7.59 -11.21 -0.09 7.43 16 16 O -0.42 -6.91 16.33 5.54 0.09 -6.82 16 17 C 0.51 6.75 8.31 -11.20 -0.09 6.66 16 18 O -0.43 -6.18 17.65 5.55 0.10 -6.08 16 19 N -0.58 -7.12 3.06 -128.66 -0.39 -7.52 16 20 C 0.09 0.76 10.95 59.85 0.66 1.41 16 21 C 0.71 10.97 8.32 -87.80 -0.73 10.24 16 22 O -0.46 -8.68 17.38 5.39 0.09 -8.58 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 1.20 6.52 -51.93 -0.34 0.86 16 26 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 27 H 0.06 1.04 5.46 -51.93 -0.28 0.76 16 28 H 0.00 -0.12 8.00 -51.93 -0.42 -0.53 16 29 H 0.05 1.18 6.24 -51.93 -0.32 0.86 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.12 2.38 7.08 -51.93 -0.37 2.01 16 32 H 0.07 1.14 7.87 -51.93 -0.41 0.73 16 33 H 0.10 0.64 7.76 -51.93 -0.40 0.24 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 306.26 15.07 4.62 4.62 Total: -1.00 -31.02 306.26 -6.07 -37.09 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -4.20 Total: -4.22 kcal Atomic # 6 Polarization: 22.13 SS G_CDS: -0.66 Total: 21.46 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -1.09 Total: -53.98 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.28 Total: -21.48 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.02 -6.07 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049389453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.383 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds