Wall clock time and date at job start Mon Mar 30 2020 00:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46900 * 109.47389 * 2 1 4 4 C 1.46900 * 110.99836 * 287.98871 * 3 2 1 5 5 C 1.50702 * 109.46987 * 160.33328 * 4 3 2 6 6 H 1.07999 * 120.00330 * 4.69468 * 5 4 3 7 7 C 1.37883 * 119.99797 * 184.69949 * 5 4 3 8 8 N 1.31512 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99730 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47081 * 90.00430 * 9 7 5 11 11 H 1.48502 * 109.47091 * 209.99695 * 9 7 5 12 12 H 1.48499 * 109.47385 * 330.00135 * 9 7 5 13 13 C 1.46893 * 111.00407 * 164.03400 * 3 2 1 14 14 N 1.46509 * 109.46932 * 278.95538 * 13 3 2 15 15 C 1.35052 * 125.56520 * 90.02367 * 14 13 3 16 16 O 1.21301 * 127.29079 * 359.97438 * 15 14 13 17 17 C 1.49988 * 105.43243 * 179.97438 * 15 14 13 18 18 O 1.21294 * 127.28550 * 180.02562 * 17 15 14 19 19 N 1.35063 * 105.42877 * 359.97438 * 17 15 14 20 20 C 1.46500 * 125.56807 * 179.73239 * 19 17 15 21 21 C 1.34281 * 125.56288 * 269.96847 * 14 13 3 22 22 O 1.21477 * 124.29950 * 0.07004 * 21 14 13 23 23 H 1.09005 * 109.47376 * 179.24903 * 1 2 3 24 24 H 1.08996 * 109.47698 * 299.25375 * 1 2 3 25 25 H 1.09005 * 109.47126 * 59.25793 * 1 2 3 26 26 H 1.09006 * 109.47239 * 240.00276 * 2 1 3 27 27 H 1.08997 * 109.47316 * 120.00308 * 2 1 3 28 28 H 1.09001 * 109.47448 * 280.33362 * 4 3 2 29 29 H 1.08997 * 109.47302 * 40.33476 * 4 3 2 30 30 H 0.96996 * 120.00064 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47326 * 158.95735 * 13 3 2 32 32 H 1.08996 * 109.47670 * 38.95294 * 13 3 2 33 33 H 1.09001 * 109.46925 * 0.02562 * 20 19 17 34 34 H 1.08994 * 109.47165 * 120.02547 * 20 19 17 35 35 H 1.08998 * 109.47309 * 240.02837 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7958 2.0224 -1.3044 5 6 1.8465 3.5203 -1.1467 6 1 2.1018 3.9545 -0.1914 7 6 1.5669 4.3366 -2.2223 8 7 1.2556 3.8080 -3.3855 9 14 1.6291 6.1932 -2.0266 10 1 2.9992 6.6776 -2.3326 11 1 0.6616 6.8221 -2.9614 12 1 1.2760 6.5560 -0.6306 13 6 3.4382 1.4418 0.3772 14 7 3.5588 1.3719 1.8356 15 6 3.6832 0.2389 2.5601 16 8 3.7162 -0.8998 2.1436 17 6 3.7718 0.6865 3.9889 18 8 3.8920 -0.0135 4.9721 19 7 3.6905 2.0341 3.9490 20 6 3.7264 2.9248 5.1116 21 6 3.5649 2.4239 2.6701 22 8 3.4684 3.5811 2.3135 23 1 -0.3634 -1.0276 -0.0135 24 1 -0.3634 0.5022 0.8965 25 1 -0.3634 0.5253 -0.8833 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.5704 1.7041 -2.0021 29 1 0.8185 1.7305 -1.6886 30 1 1.0592 4.3822 -4.1422 31 1 3.8717 2.3764 0.0212 32 1 3.9676 0.6015 -0.0718 33 1 3.8299 2.3320 6.0204 34 1 4.5740 3.6043 5.0226 35 1 2.8022 3.5008 5.1568 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049389453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:21 Heat of formation + Delta-G solvation = -64.284514 kcal Electronic energy + Delta-G solvation = -21374.646123 eV Core-core repulsion = 17988.469941 eV Total energy + Delta-G solvation = -3386.176182 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.41357 -40.39336 -40.18225 -38.56973 -37.57310 -35.95613 -34.68628 -31.91280 -30.32624 -28.52465 -26.76588 -26.14416 -24.53137 -23.04631 -22.80479 -21.55921 -19.03399 -18.98691 -18.48225 -18.20707 -17.66372 -17.01929 -16.81889 -16.43932 -16.24156 -15.78372 -15.58489 -15.37162 -15.10668 -14.26513 -14.14212 -13.96319 -13.65411 -13.51863 -13.46140 -12.92909 -12.77148 -12.67390 -12.46079 -12.20131 -12.09252 -11.80219 -11.33688 -11.32981 -11.21761 -11.00225 -10.57674 -9.27433 -8.17772 -6.25464 -0.88060 0.71887 0.94822 1.35964 1.42513 1.43563 1.49400 1.55896 2.42838 2.72136 3.09906 3.19779 3.50399 3.94278 4.07582 4.14940 4.27186 4.33743 4.47184 4.47822 4.60790 4.67193 4.79758 4.86529 4.96073 5.15602 5.23056 5.30736 5.42299 5.61220 5.71971 5.99919 6.05404 6.16870 6.45434 6.50375 6.90270 7.43720 8.92310 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020362 B = 0.006551 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.748315 B = 4273.321753 C = 5279.408063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.046 3.954 3 N -0.558 5.558 4 C 0.214 3.786 5 C -0.518 4.518 6 H 0.060 0.940 7 C 0.010 3.990 8 N -0.930 5.930 9 Si 0.958 3.042 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.294 3.706 14 N -0.561 5.561 15 C 0.511 3.489 16 O -0.434 6.434 17 C 0.526 3.474 18 O -0.431 6.431 19 N -0.566 5.566 20 C 0.082 3.918 21 C 0.713 3.287 22 O -0.498 6.498 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.033 0.967 27 H 0.071 0.929 28 H -0.021 1.021 29 H 0.025 0.975 30 H 0.264 0.736 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.234 -4.474 14.571 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.081 4.081 3 N -0.285 5.285 4 C 0.088 3.912 5 C -0.556 4.556 6 H 0.078 0.922 7 C -0.189 4.189 8 N -0.571 5.571 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.084 3.916 14 N -0.310 5.310 15 C 0.292 3.708 16 O -0.301 6.301 17 C 0.307 3.693 18 O -0.297 6.297 19 N -0.315 5.315 20 C -0.056 4.056 21 C 0.415 3.585 22 O -0.366 6.366 23 H 0.096 0.904 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.090 0.910 28 H -0.003 1.003 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.117 0.883 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.944 -4.495 14.846 16.280 hybrid contribution 0.227 0.566 -1.017 1.186 sum 5.171 -3.929 13.828 15.277 Atomic orbital electron populations 1.21686 0.94287 1.01796 1.01622 1.22222 0.97158 0.88324 1.00407 1.61685 1.16333 1.17021 1.33455 1.19403 0.95469 0.93442 0.82847 1.21451 1.46070 0.91769 0.96350 0.92182 1.25709 0.95000 1.03252 0.94892 1.70044 1.48410 1.36865 1.01737 0.85550 0.78040 0.80201 0.77835 1.19889 1.20797 1.19746 1.22049 0.91067 1.04266 0.74218 1.47038 1.66368 1.07362 1.10218 1.21081 0.76094 0.85037 0.88594 1.90802 1.42381 1.19431 1.77452 1.20534 0.76200 0.82715 0.89872 1.90821 1.42034 1.59570 1.37305 1.46637 1.67388 1.08716 1.08763 1.22311 1.05662 0.93568 0.84081 1.15993 0.76561 0.84985 0.80914 1.91063 1.49464 1.17641 1.78462 0.90363 0.92904 0.93956 0.94835 0.91019 1.00287 0.95686 0.92717 0.87521 0.89382 0.86401 0.88258 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 9.99 71.98 0.72 -3.77 16 2 C 0.05 1.62 5.53 86.30 0.48 2.10 16 3 N -0.56 -22.72 4.48 -913.18 -4.09 -26.81 16 4 C 0.21 10.61 4.54 85.56 0.39 11.00 16 5 C -0.52 -28.37 8.52 25.60 0.22 -28.15 16 6 H 0.06 3.37 7.81 -2.91 -0.02 3.35 16 7 C 0.01 0.55 5.46 84.66 0.46 1.01 16 8 N -0.93 -54.07 13.29 21.45 0.28 -53.78 16 9 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 C 0.29 10.39 5.46 170.81 0.93 11.33 16 14 N -0.56 -17.22 2.87 -784.66 -2.25 -19.47 16 15 C 0.51 14.33 7.59 87.39 0.66 14.99 16 16 O -0.43 -13.51 16.33 -3.09 -0.05 -13.56 16 17 C 0.53 12.77 8.31 87.39 0.73 13.50 16 18 O -0.43 -11.29 17.65 -3.07 -0.05 -11.35 16 19 N -0.57 -12.70 3.06 -797.77 -2.44 -15.14 16 20 C 0.08 1.14 10.95 127.77 1.40 2.54 16 21 C 0.71 21.32 8.32 179.36 1.49 22.81 16 22 O -0.50 -18.41 17.38 -3.64 -0.06 -18.48 16 23 H 0.08 2.08 8.14 -2.38 -0.02 2.07 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.04 1.57 6.52 -2.38 -0.02 1.56 16 26 H 0.03 1.16 8.05 -2.38 -0.02 1.14 16 27 H 0.07 2.35 5.46 -2.39 -0.01 2.34 16 28 H -0.02 -1.07 8.00 -2.39 -0.02 -1.09 16 29 H 0.03 1.34 6.24 -2.39 -0.01 1.33 16 30 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.11 4.16 7.08 -2.39 -0.02 4.15 16 32 H 0.09 2.79 7.87 -2.39 -0.02 2.77 16 33 H 0.12 1.16 7.76 -2.39 -0.02 1.15 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -65.73 306.26 1.95 -63.77 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: 1.11 Total: 1.10 kcal Atomic # 6 Polarization: 39.88 SS G_CDS: 7.48 Total: 47.35 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -8.50 Total: -115.20 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -0.17 Total: -43.38 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -65.73 1.95 -63.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049389453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.512 kcal (2) G-P(sol) polarization free energy of solvation -65.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds