Wall clock time and date at job start Mon Mar 30 2020 00:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99758 * 2 1 4 4 C 1.52997 * 109.47052 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.46850 * 65.00265 * 4 3 2 6 6 C 1.42901 * 113.99787 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47082 * 179.97438 * 6 5 4 8 8 O 1.21304 * 120.00152 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99798 * 180.27334 * 7 6 5 10 10 C 1.40595 * 119.99764 * 179.72414 * 9 7 6 11 11 C 1.40646 * 126.08311 * 359.69131 * 10 9 7 12 12 N 1.30914 * 108.38784 * 179.87895 * 11 10 9 13 13 N 1.40065 * 108.40439 * 0.38138 * 12 11 10 14 14 C 1.37327 * 126.06489 * 179.73676 * 13 12 11 15 15 H 1.08003 * 119.99416 * 174.15969 * 14 13 12 16 16 C 1.38979 * 120.00372 * 354.16004 * 14 13 12 17 17 N 1.31300 * 119.99795 * 5.93274 * 16 14 13 18 18 Si 1.86793 * 120.00339 * 185.93961 * 16 14 13 19 19 H 1.48508 * 109.47464 * 94.97550 * 18 16 14 20 20 H 1.48497 * 109.47452 * 214.97875 * 18 16 14 21 21 H 1.48508 * 109.47127 * 334.97858 * 18 16 14 22 22 C 1.35686 * 126.08204 * 180.02562 * 10 9 7 23 23 H 1.08995 * 109.46874 * 299.99682 * 1 2 3 24 24 H 1.08996 * 109.47246 * 60.00002 * 1 2 3 25 25 H 1.09001 * 109.46606 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47116 * 60.00301 * 3 2 1 27 27 H 1.08996 * 109.47295 * 300.00458 * 3 2 1 28 28 H 1.09004 * 109.47186 * 305.00192 * 4 3 2 29 29 H 1.09005 * 109.47047 * 185.00316 * 4 3 2 30 30 H 1.09004 * 109.47297 * 59.99875 * 6 5 4 31 31 H 1.08998 * 109.47290 * 300.00345 * 6 5 4 32 32 H 0.97001 * 120.00137 * 359.73317 * 9 7 6 33 33 H 1.07998 * 125.80732 * 0.02562 * 11 10 9 34 34 H 0.96997 * 119.99732 * 180.02562 * 17 16 14 35 35 H 1.07995 * 126.24184 * 359.92839 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9648 0.5798 -1.2220 6 6 5.3812 0.4204 -1.3252 7 6 5.7193 -0.2241 -2.6448 8 8 4.8344 -0.5184 -3.4205 9 7 7.0046 -0.4789 -2.9605 10 6 7.3196 -1.0854 -4.1891 11 6 6.4003 -1.4832 -5.1764 12 7 7.0668 -2.0047 -6.1752 13 7 8.4317 -1.9687 -5.8628 14 6 9.4548 -2.4281 -6.6554 15 1 10.4810 -2.2667 -6.3597 16 6 9.1698 -3.1006 -7.8377 17 7 7.9289 -3.1954 -8.2563 18 14 10.5519 -3.8699 -8.8312 19 1 10.6878 -5.3024 -8.4638 20 1 10.2427 -3.7576 -10.2793 21 1 11.8243 -3.1615 -8.5404 22 6 8.5643 -1.3969 -4.6306 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8515 0.5682 0.8409 29 1 3.9785 2.1766 0.0890 30 1 5.7359 -0.2117 -0.5111 31 1 5.8622 1.3965 -1.2632 32 1 7.7122 -0.2440 -2.3400 33 1 5.3272 -1.3745 -5.1211 34 1 7.7300 -3.6651 -9.0813 35 1 9.4907 -1.2233 -4.1035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049993960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:42 Heat of formation + Delta-G solvation = -35.018444 kcal Electronic energy + Delta-G solvation = -19652.596535 eV Core-core repulsion = 16267.689425 eV Total energy + Delta-G solvation = -3384.907110 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.88081 -38.87719 -38.14113 -36.91570 -34.12652 -33.11190 -30.85447 -30.18934 -28.49136 -26.86999 -26.27300 -24.60495 -22.71660 -21.08076 -20.35258 -19.35619 -17.56210 -17.05480 -16.91464 -16.60649 -15.78852 -15.53945 -15.43013 -15.17282 -14.84872 -14.18039 -14.05121 -13.54285 -13.19402 -12.85969 -12.68722 -12.40745 -12.13665 -11.65201 -11.56385 -11.36865 -11.25725 -11.20748 -10.88441 -10.50298 -10.09903 -9.86582 -9.75142 -9.13098 -9.04504 -8.75294 -8.00987 -6.65681 -6.52360 -4.19017 2.87476 3.04632 3.06988 3.11266 3.13277 3.59482 3.71664 3.85010 4.16133 4.46291 4.74485 4.82808 4.96913 5.02934 5.04763 5.12911 5.15856 5.21714 5.25781 5.28400 5.32756 5.51989 5.53921 6.28050 6.49572 6.87873 6.95940 7.00312 7.06063 7.20810 7.29493 7.90459 8.23609 8.32624 8.68617 8.92189 9.42540 9.71681 10.44006 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.050275 B = 0.003033 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.806217 B = 9228.502280 C = 9682.420786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.352 6.352 6 C 0.050 3.950 7 C 0.497 3.503 8 O -0.513 6.513 9 N -0.625 5.625 10 C -0.058 4.058 11 C -0.033 4.033 12 N -0.261 5.261 13 N -0.144 5.144 14 C -0.324 4.324 15 H 0.116 0.884 16 C 0.046 3.954 17 N -0.770 5.770 18 Si 0.935 3.065 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.264 1.264 22 C -0.083 4.083 23 H 0.037 0.963 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.396 0.604 33 H 0.176 0.824 34 H 0.274 0.726 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.033 8.478 16.331 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.270 6.270 6 C -0.030 4.030 7 C 0.282 3.718 8 O -0.388 6.388 9 N -0.270 5.270 10 C -0.163 4.163 11 C -0.209 4.209 12 N -0.092 5.092 13 N 0.088 4.912 14 C -0.456 4.456 15 H 0.134 0.866 16 C -0.171 4.171 17 N -0.396 5.396 18 Si 0.758 3.242 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.234 4.234 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.229 0.771 33 H 0.193 0.807 34 H 0.085 0.915 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.943 7.418 14.268 17.145 hybrid contribution 1.100 0.561 1.058 1.626 sum -4.844 7.979 15.326 17.945 Atomic orbital electron populations 1.22742 0.81134 1.02918 0.99712 1.87998 1.19547 1.27122 1.95327 1.22536 0.92282 0.85688 1.00823 1.22571 0.93663 0.97502 0.87856 1.88111 1.19731 1.81913 1.37251 1.22141 0.83850 1.00486 0.96562 1.19955 0.82770 0.81002 0.88066 1.90631 1.46733 1.50976 1.50458 1.42355 1.06823 1.59669 1.18145 1.17249 0.93236 1.15664 0.90153 1.24135 1.00088 1.04295 0.92358 1.78251 0.85794 1.24401 1.20738 1.44546 1.05291 1.32554 1.08788 1.19860 0.86133 1.36502 1.03136 0.86641 1.25644 0.97634 0.96518 0.97315 1.70231 1.18059 1.31898 1.19426 0.85817 0.80035 0.79553 0.78749 1.19665 1.20132 1.18818 1.21247 0.96525 1.13709 0.91945 0.94393 0.93912 0.89559 0.91885 0.92188 0.92324 0.91684 0.90606 0.90728 0.77073 0.80703 0.91494 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.87 10.67 -40.09 -0.43 -5.30 16 3 C 0.06 0.63 6.32 37.16 0.23 0.87 16 4 C 0.06 0.62 6.32 37.16 0.23 0.85 16 5 O -0.35 -5.32 9.84 -59.73 -0.59 -5.91 16 6 C 0.05 0.64 6.42 36.01 0.23 0.88 16 7 C 0.50 9.23 7.88 -10.99 -0.09 9.14 16 8 O -0.51 -12.14 13.65 -14.37 -0.20 -12.34 16 9 N -0.63 -11.32 5.47 -10.00 -0.05 -11.37 16 10 C -0.06 -1.37 6.90 -83.84 -0.58 -1.94 16 11 C -0.03 -0.91 10.85 -17.03 -0.18 -1.09 16 12 N -0.26 -7.80 10.42 30.80 0.32 -7.48 16 13 N -0.14 -4.03 3.74 -11.41 -0.04 -4.07 16 14 C -0.32 -8.71 10.24 -14.82 -0.15 -8.86 16 15 H 0.12 2.76 7.84 -52.48 -0.41 2.35 16 16 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 17 N -0.77 -21.91 11.84 55.49 0.66 -21.25 16 18 Si 0.93 19.19 29.55 -169.99 -5.02 14.16 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 22 C -0.08 -1.99 11.49 -16.39 -0.19 -2.18 16 23 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.40 5.26 8.83 -40.82 -0.36 4.90 16 33 H 0.18 4.82 5.92 -52.49 -0.31 4.51 16 34 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.15 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 311.64 15.07 4.70 4.70 Total: -1.00 -37.15 311.64 -4.58 -41.72 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.44 Total: 6.97 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 0.53 Total: 0.17 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.88 Total: -44.18 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -1.21 Total: -23.54 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -37.15 -4.58 -41.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049993960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.705 kcal (2) G-P(sol) polarization free energy of solvation -37.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds