Wall clock time and date at job start Mon Mar 30 2020 00:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99758 * 2 1 4 4 C 1.52997 * 109.47052 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.46850 * 65.00265 * 4 3 2 6 6 C 1.42901 * 113.99787 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47082 * 179.97438 * 6 5 4 8 8 O 1.21304 * 120.00152 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99798 * 180.27334 * 7 6 5 10 10 C 1.40595 * 119.99764 * 179.72414 * 9 7 6 11 11 C 1.40646 * 126.08311 * 359.69131 * 10 9 7 12 12 N 1.30914 * 108.38784 * 179.87895 * 11 10 9 13 13 N 1.40065 * 108.40439 * 0.38138 * 12 11 10 14 14 C 1.37327 * 126.06489 * 179.73676 * 13 12 11 15 15 H 1.08003 * 119.99416 * 174.15969 * 14 13 12 16 16 C 1.38979 * 120.00372 * 354.16004 * 14 13 12 17 17 N 1.31300 * 119.99795 * 5.93274 * 16 14 13 18 18 Si 1.86793 * 120.00339 * 185.93961 * 16 14 13 19 19 H 1.48508 * 109.47464 * 94.97550 * 18 16 14 20 20 H 1.48497 * 109.47452 * 214.97875 * 18 16 14 21 21 H 1.48508 * 109.47127 * 334.97858 * 18 16 14 22 22 C 1.35686 * 126.08204 * 180.02562 * 10 9 7 23 23 H 1.08995 * 109.46874 * 299.99682 * 1 2 3 24 24 H 1.08996 * 109.47246 * 60.00002 * 1 2 3 25 25 H 1.09001 * 109.46606 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47116 * 60.00301 * 3 2 1 27 27 H 1.08996 * 109.47295 * 300.00458 * 3 2 1 28 28 H 1.09004 * 109.47186 * 305.00192 * 4 3 2 29 29 H 1.09005 * 109.47047 * 185.00316 * 4 3 2 30 30 H 1.09004 * 109.47297 * 59.99875 * 6 5 4 31 31 H 1.08998 * 109.47290 * 300.00345 * 6 5 4 32 32 H 0.97001 * 120.00137 * 359.73317 * 9 7 6 33 33 H 1.07998 * 125.80732 * 0.02562 * 11 10 9 34 34 H 0.96997 * 119.99732 * 180.02562 * 17 16 14 35 35 H 1.07995 * 126.24184 * 359.92839 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9648 0.5798 -1.2220 6 6 5.3812 0.4204 -1.3252 7 6 5.7193 -0.2241 -2.6448 8 8 4.8344 -0.5184 -3.4205 9 7 7.0046 -0.4789 -2.9605 10 6 7.3196 -1.0854 -4.1891 11 6 6.4003 -1.4832 -5.1764 12 7 7.0668 -2.0047 -6.1752 13 7 8.4317 -1.9687 -5.8628 14 6 9.4548 -2.4281 -6.6554 15 1 10.4810 -2.2667 -6.3597 16 6 9.1698 -3.1006 -7.8377 17 7 7.9289 -3.1954 -8.2563 18 14 10.5519 -3.8699 -8.8312 19 1 10.6878 -5.3024 -8.4638 20 1 10.2427 -3.7576 -10.2793 21 1 11.8243 -3.1615 -8.5404 22 6 8.5643 -1.3969 -4.6306 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8515 0.5682 0.8409 29 1 3.9785 2.1766 0.0890 30 1 5.7359 -0.2117 -0.5111 31 1 5.8622 1.3965 -1.2632 32 1 7.7122 -0.2440 -2.3400 33 1 5.3272 -1.3745 -5.1211 34 1 7.7300 -3.6651 -9.0813 35 1 9.4907 -1.2233 -4.1035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049993960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:41 Heat of formation + Delta-G solvation = -64.169195 kcal Electronic energy + Delta-G solvation = -19653.860607 eV Core-core repulsion = 16267.689425 eV Total energy + Delta-G solvation = -3386.171181 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.69615 -40.34713 -39.15757 -37.92618 -35.89337 -34.96134 -32.30526 -31.62502 -30.06613 -28.27434 -27.10318 -26.46827 -23.47218 -22.91979 -22.04378 -21.19456 -19.34276 -18.06813 -17.98714 -17.76514 -17.38739 -16.85320 -16.72182 -16.20438 -16.06630 -15.63726 -15.60387 -14.96769 -14.90453 -14.76559 -13.65253 -13.48797 -13.35289 -13.25885 -12.99311 -12.88925 -12.78836 -12.32147 -12.05771 -11.98294 -11.83146 -11.01881 -10.82193 -10.67708 -10.61195 -10.56416 -10.09624 -8.52341 -8.46482 -6.23858 1.22779 1.40416 1.53419 1.59140 1.86764 1.87720 2.18120 2.51775 2.84111 2.90651 3.08998 3.16034 3.88107 4.13703 4.26085 4.28337 4.38498 4.44883 4.46751 4.49487 4.58328 4.61808 4.62434 4.81411 4.86101 5.01486 5.09087 5.30212 5.48055 5.96753 6.11578 6.29277 6.34747 6.74183 6.80228 7.43225 7.49263 7.68989 8.53336 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.050275 B = 0.003033 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.806217 B = 9228.502280 C = 9682.420786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.055 3.945 4 C 0.055 3.945 5 O -0.399 6.399 6 C 0.061 3.939 7 C 0.490 3.510 8 O -0.573 6.573 9 N -0.612 5.612 10 C -0.044 4.044 11 C -0.064 4.064 12 N -0.312 5.312 13 N -0.169 5.169 14 C -0.354 4.354 15 H 0.143 0.857 16 C -0.009 4.009 17 N -0.826 5.826 18 Si 1.021 2.979 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.241 1.241 22 C -0.077 4.077 23 H 0.062 0.938 24 H 0.041 0.959 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.424 0.576 33 H 0.161 0.839 34 H 0.276 0.724 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.793 9.625 18.786 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.021 4.021 4 C -0.021 4.021 5 O -0.318 6.318 6 C -0.018 4.018 7 C 0.277 3.723 8 O -0.451 6.451 9 N -0.260 5.260 10 C -0.150 4.150 11 C -0.240 4.240 12 N -0.145 5.145 13 N 0.062 4.938 14 C -0.485 4.485 15 H 0.161 0.839 16 C -0.220 4.220 17 N -0.454 5.454 18 Si 0.840 3.160 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.163 1.163 22 C -0.228 4.228 23 H 0.081 0.919 24 H 0.059 0.941 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.262 0.738 33 H 0.178 0.822 34 H 0.086 0.914 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -3.680 8.609 16.804 19.237 hybrid contribution 0.307 0.296 0.444 0.616 sum -3.373 8.905 17.248 19.702 Atomic orbital electron populations 1.22887 0.79785 1.03475 1.00844 1.87939 1.21326 1.29073 1.95593 1.22791 0.92473 0.84867 1.01968 1.22894 0.93720 0.99191 0.86261 1.88059 1.20835 1.82960 1.39952 1.22188 0.83719 1.02683 0.93203 1.21219 0.81858 0.79595 0.89587 1.90616 1.48454 1.53218 1.52825 1.42283 1.08081 1.58949 1.16673 1.17340 0.92262 1.14078 0.91300 1.24129 1.00063 1.05878 0.93883 1.78147 0.87577 1.26216 1.22516 1.44869 1.04743 1.33813 1.10399 1.20650 0.87078 1.36949 1.03807 0.83938 1.26935 1.00428 0.96368 0.98290 1.70421 1.21115 1.33587 1.20318 0.84551 0.76824 0.78396 0.76240 1.19215 1.20251 1.16333 1.22033 0.98276 1.11650 0.90807 0.91907 0.94065 0.89440 0.88374 0.93257 0.91101 0.88256 0.87104 0.86353 0.73826 0.82162 0.91442 0.78995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.70 16 2 O -0.42 -10.47 10.67 -144.34 -1.54 -12.01 16 3 C 0.06 1.00 6.32 71.98 0.45 1.46 16 4 C 0.06 0.96 6.32 71.98 0.45 1.41 16 5 O -0.40 -11.37 9.84 -125.56 -1.24 -12.60 16 6 C 0.06 1.38 6.42 71.24 0.46 1.84 16 7 C 0.49 17.65 7.88 87.66 0.69 18.34 16 8 O -0.57 -27.94 13.65 15.93 0.22 -27.72 16 9 N -0.61 -20.97 5.47 -303.92 -1.66 -22.63 16 10 C -0.04 -2.06 6.90 37.73 0.26 -1.80 16 11 C -0.06 -3.69 10.85 85.42 0.93 -2.77 16 12 N -0.31 -19.53 10.42 -56.47 -0.59 -20.12 16 13 N -0.17 -9.58 3.74 -190.02 -0.71 -10.29 16 14 C -0.35 -18.96 10.24 84.01 0.86 -18.10 16 15 H 0.14 6.55 7.84 -2.91 -0.02 6.53 16 16 C -0.01 -0.47 5.50 84.95 0.47 0.00 16 17 N -0.83 -48.87 11.84 21.66 0.26 -48.62 16 18 Si 1.02 39.10 29.55 68.60 2.03 41.13 16 19 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 20 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 21 H -0.24 -8.20 7.11 99.48 0.71 -7.50 16 22 C -0.08 -3.61 11.49 83.38 0.96 -2.65 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.42 9.64 8.83 -92.71 -0.82 8.83 16 33 H 0.16 9.51 5.92 -2.91 -0.02 9.49 16 34 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 35 H 0.19 6.84 8.06 -2.91 -0.02 6.82 16 Total: -1.00 -87.76 311.64 3.84 -83.92 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.29 Total: 29.50 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 6.78 Total: -0.55 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -2.70 Total: -101.66 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -2.56 Total: -52.34 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -87.76 3.84 -83.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049993960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.749 kcal (2) G-P(sol) polarization free energy of solvation -87.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds