Wall clock time and date at job start Mon Mar 30 2020 00:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46500 * 109.47436 * 119.99618 * 2 1 3 13 13 C 1.34774 * 120.00476 * 275.00648 * 12 2 1 14 14 O 1.21558 * 119.99662 * 359.97438 * 13 12 2 15 15 C 1.47774 * 119.99829 * 179.97438 * 13 12 2 16 16 C 1.40646 * 119.74849 * 359.72744 * 15 13 12 17 17 C 1.35728 * 120.84767 * 179.74897 * 16 15 13 18 18 C 1.40711 * 120.01566 * 0.52114 * 17 16 15 19 19 C 1.40480 * 121.04168 * 179.74402 * 18 17 16 20 20 C 1.36138 * 119.72098 * 180.02562 * 19 18 17 21 21 C 1.39367 * 121.00980 * 359.95042 * 20 19 18 22 22 C 1.36084 * 120.95454 * 0.02562 * 21 20 19 23 23 C 1.40661 * 119.66074 * 0.02562 * 22 21 20 24 24 C 1.38492 * 119.74255 * 179.97438 * 15 13 12 25 25 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 26 26 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 27 27 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 0.97008 * 119.99239 * 95.00725 * 12 2 1 30 30 H 1.08001 * 119.57949 * 359.97438 * 16 15 13 31 31 H 1.07996 * 119.99325 * 180.28385 * 17 16 15 32 32 H 1.08001 * 120.14052 * 0.04282 * 19 18 17 33 33 H 1.08007 * 119.49681 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.52005 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.17252 * 179.97438 * 22 21 20 36 36 H 1.07995 * 120.27862 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8583 1.1613 2.4116 15 6 2.6392 -0.7150 3.5638 16 6 2.9663 -2.0812 3.4961 17 6 3.4251 -2.7420 4.5893 18 6 3.5685 -2.0631 5.8134 19 6 4.0362 -2.7271 6.9596 20 6 4.1641 -2.0441 8.1303 21 6 3.8387 -0.6914 8.2117 22 6 3.3830 -0.0144 7.1227 23 6 3.2367 -0.6869 5.8960 24 6 2.7699 -0.0189 4.7539 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 0.7087 1.1613 -3.4844 29 1 2.2492 -1.6317 1.1525 30 1 2.8545 -2.6105 2.5614 31 1 3.6765 -3.7901 4.5206 32 1 4.2935 -3.7750 6.9123 33 1 4.5237 -2.5583 9.0095 34 1 3.9497 -0.1730 9.1526 35 1 3.1341 1.0337 7.2001 36 1 2.5142 1.0292 4.8026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050337173.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:14 Heat of formation + Delta-G solvation = -1.374281 kcal Electronic energy + Delta-G solvation = -19138.399501 eV Core-core repulsion = 16165.800575 eV Total energy + Delta-G solvation = -2972.598926 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.46379 -38.80127 -36.14862 -34.84102 -32.77150 -32.44302 -30.64937 -29.26623 -28.60427 -25.27222 -24.17800 -23.20703 -21.99142 -21.17414 -19.70090 -18.06801 -17.29214 -16.70131 -15.96439 -15.38422 -15.05214 -14.76533 -14.31401 -14.14676 -13.77207 -13.45535 -13.42828 -13.16520 -13.02830 -12.43323 -11.95353 -11.72377 -11.30993 -11.28205 -11.09638 -10.95374 -10.88463 -10.73808 -10.33789 -10.23811 -10.03676 -9.16945 -9.06030 -8.68154 -8.55749 -8.02651 -7.86016 -6.12849 -4.22475 0.39031 0.81754 1.95004 2.67270 3.25483 3.30707 3.31849 3.70263 4.01125 4.23776 4.36421 4.51763 4.71525 4.76431 5.00188 5.05553 5.19323 5.24113 5.24810 5.29032 5.42888 5.70965 5.84012 6.02748 6.09404 6.14110 6.31783 6.44757 6.51487 6.73151 6.82392 6.89118 6.96633 7.14157 7.43026 7.54899 7.68447 7.90552 8.13902 8.63028 8.76070 9.07499 9.44880 10.93177 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039230 B = 0.003744 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.572098 B = 7476.737101 C = 7968.657465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.701 5.701 13 C 0.540 3.460 14 O -0.551 6.551 15 C -0.119 4.119 16 C -0.086 4.086 17 C -0.117 4.117 18 C -0.040 4.040 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.126 4.126 22 C -0.095 4.095 23 C -0.061 4.061 24 C -0.046 4.046 25 H 0.015 0.985 26 H 0.091 0.909 27 H 0.027 0.973 28 H 0.265 0.735 29 H 0.388 0.612 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.383 -7.441 18.263 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.348 5.348 13 C 0.326 3.674 14 O -0.431 6.431 15 C -0.123 4.123 16 C -0.105 4.105 17 C -0.135 4.135 18 C -0.040 4.040 19 C -0.129 4.129 20 C -0.132 4.132 21 C -0.144 4.144 22 C -0.113 4.113 23 C -0.062 4.062 24 C -0.065 4.065 25 H 0.034 0.966 26 H 0.110 0.890 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.068 -6.469 18.080 19.860 hybrid contribution 0.410 -0.974 -0.902 1.390 sum 5.479 -7.443 17.177 19.506 Atomic orbital electron populations 1.22083 0.98324 0.99191 1.00992 1.18786 0.91120 0.94060 0.79805 0.93195 1.21174 1.32602 1.13312 0.90322 0.92101 1.24887 0.94771 0.94952 0.99054 1.69896 1.35726 1.22406 1.24029 0.86490 0.79184 0.79576 0.81753 1.21107 1.20143 1.20138 1.46504 1.64356 1.13571 1.10394 1.18219 0.78968 0.86802 0.83425 1.90724 1.51672 1.15621 1.85133 1.20273 1.02604 0.94304 0.95087 1.21032 0.96913 0.93453 0.99059 1.20895 1.00840 0.99906 0.91815 1.18196 0.98571 0.92971 0.94265 1.21030 0.99795 0.99804 0.92254 1.20867 0.99842 0.94644 0.97881 1.20824 1.00185 0.94707 0.98687 1.21123 0.98399 0.99935 0.91826 1.18086 1.00666 0.93226 0.94177 1.21512 0.94354 1.00257 0.90356 0.96580 0.89038 0.95423 0.92479 0.77811 0.85231 0.85194 0.85570 0.86092 0.86001 0.85307 0.84085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.81 2.56 -69.09 -0.18 6.64 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.54 -14.27 8.73 -34.44 -0.30 -14.57 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.97 11.32 55.43 0.63 -24.34 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.70 -15.03 5.02 -55.90 -0.28 -15.31 16 13 C 0.54 11.39 7.73 -12.36 -0.10 11.30 16 14 O -0.55 -13.60 15.96 5.32 0.08 -13.52 16 15 C -0.12 -2.00 5.87 -105.00 -0.62 -2.62 16 16 C -0.09 -1.19 9.44 -39.57 -0.37 -1.56 16 17 C -0.12 -1.39 9.73 -39.55 -0.38 -1.77 16 18 C -0.04 -0.49 5.75 -106.76 -0.61 -1.11 16 19 C -0.11 -1.10 9.76 -39.49 -0.39 -1.48 16 20 C -0.11 -1.02 9.95 -39.92 -0.40 -1.42 16 21 C -0.13 -1.17 9.95 -39.94 -0.40 -1.57 16 22 C -0.09 -1.04 9.77 -39.44 -0.39 -1.43 16 23 C -0.06 -0.82 5.74 -106.85 -0.61 -1.43 16 24 C -0.05 -0.70 9.34 -38.71 -0.36 -1.06 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.39 7.15 6.52 -40.82 -0.27 6.89 16 30 H 0.13 1.59 6.34 -52.49 -0.33 1.26 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 36 H 0.14 2.16 7.61 -52.49 -0.40 1.76 16 LS Contribution 308.76 15.07 4.65 4.65 Total: -1.00 -31.39 308.76 -9.00 -40.38 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.21 Total: 6.29 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -4.85 Total: -13.76 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.35 Total: -39.65 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.08 Total: -13.52 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.39 -9.00 -40.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337173.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.009 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds