Wall clock time and date at job start Mon Mar 30 2020 00:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46500 * 109.47436 * 119.99618 * 2 1 3 13 13 C 1.34774 * 120.00476 * 275.00648 * 12 2 1 14 14 O 1.21558 * 119.99662 * 359.97438 * 13 12 2 15 15 C 1.47774 * 119.99829 * 179.97438 * 13 12 2 16 16 C 1.40646 * 119.74849 * 359.72744 * 15 13 12 17 17 C 1.35728 * 120.84767 * 179.74897 * 16 15 13 18 18 C 1.40711 * 120.01566 * 0.52114 * 17 16 15 19 19 C 1.40480 * 121.04168 * 179.74402 * 18 17 16 20 20 C 1.36138 * 119.72098 * 180.02562 * 19 18 17 21 21 C 1.39367 * 121.00980 * 359.95042 * 20 19 18 22 22 C 1.36084 * 120.95454 * 0.02562 * 21 20 19 23 23 C 1.40661 * 119.66074 * 0.02562 * 22 21 20 24 24 C 1.38492 * 119.74255 * 179.97438 * 15 13 12 25 25 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 26 26 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 27 27 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 0.97008 * 119.99239 * 95.00725 * 12 2 1 30 30 H 1.08001 * 119.57949 * 359.97438 * 16 15 13 31 31 H 1.07996 * 119.99325 * 180.28385 * 17 16 15 32 32 H 1.08001 * 120.14052 * 0.04282 * 19 18 17 33 33 H 1.08007 * 119.49681 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.52005 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.17252 * 179.97438 * 22 21 20 36 36 H 1.07995 * 120.27862 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 7 2.0184 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8583 1.1613 2.4116 15 6 2.6392 -0.7150 3.5638 16 6 2.9663 -2.0812 3.4961 17 6 3.4251 -2.7420 4.5893 18 6 3.5685 -2.0631 5.8134 19 6 4.0362 -2.7271 6.9596 20 6 4.1641 -2.0441 8.1303 21 6 3.8387 -0.6914 8.2117 22 6 3.3830 -0.0144 7.1227 23 6 3.2367 -0.6869 5.8960 24 6 2.7699 -0.0189 4.7539 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 0.7087 1.1613 -3.4844 29 1 2.2492 -1.6317 1.1525 30 1 2.8545 -2.6105 2.5614 31 1 3.6765 -3.7901 4.5206 32 1 4.2935 -3.7750 6.9123 33 1 4.5237 -2.5583 9.0095 34 1 3.9497 -0.1730 9.1526 35 1 3.1341 1.0337 7.2001 36 1 2.5142 1.0292 4.8026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050337173.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:13 Heat of formation + Delta-G solvation = -19.892917 kcal Electronic energy + Delta-G solvation = -19139.202529 eV Core-core repulsion = 16165.800575 eV Total energy + Delta-G solvation = -2973.401955 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.53511 -40.31226 -37.20915 -36.75196 -34.40465 -33.67028 -31.94501 -30.39826 -30.09749 -27.37427 -25.44053 -24.12547 -23.03479 -22.71288 -21.42697 -19.59634 -18.25668 -18.03228 -17.53367 -16.88703 -16.60439 -15.97689 -15.75590 -15.58373 -14.97699 -14.60754 -14.47692 -14.41402 -14.29544 -13.99414 -13.73563 -13.02412 -12.92800 -12.86910 -12.76112 -12.31161 -12.20556 -12.17885 -12.12986 -11.76724 -11.15578 -10.96625 -10.90285 -10.61035 -9.90425 -9.57170 -8.86783 -8.19132 -6.37547 -0.59577 -0.12710 1.00706 1.44731 1.47433 1.55249 1.60209 2.31247 2.41502 2.54368 3.11035 3.17112 3.64254 3.76658 3.87979 4.04151 4.15390 4.22064 4.35059 4.43713 4.51625 4.71260 4.83775 4.88186 4.94210 5.04506 5.11974 5.18200 5.26932 5.34707 5.39792 5.55662 5.58466 5.60776 5.64933 5.81841 5.87813 6.04964 6.05636 6.68695 6.87160 7.27849 7.44860 8.87410 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039230 B = 0.003744 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.572098 B = 7476.737101 C = 7968.657465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.001 1.001 4 C -0.551 4.551 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.976 3.024 9 H -0.286 1.286 10 H -0.270 1.270 11 H -0.262 1.262 12 N -0.696 5.696 13 C 0.537 3.463 14 O -0.600 6.600 15 C -0.143 4.143 16 C -0.102 4.102 17 C -0.100 4.100 18 C -0.053 4.053 19 C -0.113 4.113 20 C -0.108 4.108 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.079 4.079 24 C -0.054 4.054 25 H 0.010 0.990 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.266 0.734 29 H 0.405 0.595 30 H 0.141 0.859 31 H 0.168 0.832 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.136 0.864 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.018 -10.737 20.316 24.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.017 0.983 4 C -0.589 4.589 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.800 3.200 9 H -0.211 1.211 10 H -0.195 1.195 11 H -0.186 1.186 12 N -0.345 5.345 13 C 0.326 3.674 14 O -0.484 6.484 15 C -0.146 4.146 16 C -0.120 4.120 17 C -0.117 4.117 18 C -0.053 4.053 19 C -0.131 4.131 20 C -0.126 4.126 21 C -0.134 4.134 22 C -0.134 4.134 23 C -0.079 4.079 24 C -0.073 4.073 25 H 0.029 0.971 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.241 0.759 30 H 0.159 0.841 31 H 0.185 0.815 32 H 0.175 0.825 33 H 0.174 0.826 34 H 0.169 0.831 35 H 0.154 0.846 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.716 -9.806 20.159 23.401 hybrid contribution -0.041 0.071 -1.282 1.285 sum 6.675 -9.735 18.876 22.263 Atomic orbital electron populations 1.21908 0.98130 0.99605 0.99629 1.18410 0.91275 0.91977 0.81715 0.98338 1.21505 1.32906 1.13767 0.90683 0.90692 1.25843 0.94759 0.95570 1.02416 1.70053 1.36836 1.23922 1.24798 0.85337 0.78642 0.78736 0.77274 1.21111 1.19525 1.18643 1.46223 1.64509 1.14233 1.09494 1.18931 0.77720 0.86351 0.84413 1.90679 1.53772 1.17890 1.86019 1.19942 1.05604 0.95827 0.93261 1.21085 0.98276 0.92065 1.00598 1.21285 0.98426 1.01335 0.90678 1.18557 0.98527 0.92591 0.95601 1.21400 0.98969 1.01312 0.91418 1.21361 0.97976 0.94405 0.98818 1.21257 0.97866 0.95209 0.99045 1.21320 0.99598 1.00720 0.91749 1.18256 1.01274 0.94244 0.94117 1.21516 0.94867 0.99798 0.91142 0.97099 0.91154 0.93909 0.92436 0.75882 0.84146 0.81451 0.82463 0.82570 0.83090 0.84625 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.06 9.26 71.98 0.67 -6.39 16 2 C 0.27 14.58 2.56 44.24 0.11 14.70 16 3 H 0.00 -0.08 7.58 -2.38 -0.02 -0.10 16 4 C -0.55 -29.78 8.73 25.60 0.22 -29.55 16 5 H 0.07 3.75 7.74 -2.91 -0.02 3.72 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -53.46 11.32 21.45 0.24 -53.21 16 8 Si 0.98 42.22 29.54 68.60 2.03 44.25 16 9 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 12 N -0.70 -31.09 5.02 -449.06 -2.25 -33.34 16 13 C 0.54 24.09 7.73 86.77 0.67 24.76 16 14 O -0.60 -32.06 15.96 -3.90 -0.06 -32.12 16 15 C -0.14 -5.00 5.87 -20.11 -0.12 -5.12 16 16 C -0.10 -2.74 9.44 22.28 0.21 -2.53 16 17 C -0.10 -2.10 9.73 22.29 0.22 -1.89 16 18 C -0.05 -1.16 5.75 -21.25 -0.12 -1.29 16 19 C -0.11 -1.74 9.76 22.33 0.22 -1.52 16 20 C -0.11 -1.41 9.95 22.05 0.22 -1.19 16 21 C -0.12 -1.74 9.95 22.04 0.22 -1.52 16 22 C -0.12 -2.40 9.77 22.36 0.22 -2.18 16 23 C -0.08 -2.06 5.74 -21.31 -0.12 -2.18 16 24 C -0.05 -1.74 9.34 22.83 0.21 -1.53 16 25 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.07 4.00 6.07 -2.39 -0.01 3.99 16 27 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 29 H 0.40 15.11 6.52 -92.70 -0.60 14.50 16 30 H 0.14 3.31 6.34 -2.91 -0.02 3.29 16 31 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 34 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 35 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.13 4.26 7.61 -2.91 -0.02 4.24 16 Total: -1.00 -72.12 308.76 3.72 -68.40 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.49 Total: 22.24 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 3.28 Total: -16.21 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -2.01 Total: -86.55 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.06 Total: -32.12 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -72.12 3.72 -68.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337173.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.503 kcal (2) G-P(sol) polarization free energy of solvation -72.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds