Wall clock time and date at job start Mon Mar 30 2020 00:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00176 * 2 1 4 4 C 1.52993 * 109.47445 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47015 * 65.00664 * 4 3 2 6 6 C 1.46901 * 111.00210 * 189.99966 * 5 4 3 7 7 C 1.53002 * 109.47301 * 75.60764 * 6 5 4 8 8 C 1.50691 * 109.47185 * 178.51782 * 7 6 5 9 9 H 1.08000 * 120.00355 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99796 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00434 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99726 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46830 * 89.99977 * 12 10 8 14 14 H 1.48499 * 109.46797 * 209.99740 * 12 10 8 15 15 H 1.48502 * 109.47381 * 329.99898 * 12 10 8 16 16 C 1.46903 * 111.00280 * 66.04161 * 5 4 3 17 17 C 1.50696 * 109.47092 * 199.64140 * 16 5 4 18 18 C 1.33388 * 125.20883 * 83.81202 * 17 16 5 19 19 C 1.38417 * 114.92688 * 179.97438 * 18 17 16 20 20 C 1.33396 * 114.91924 * 359.97438 * 19 18 17 21 21 S 1.75884 * 109.59146 * 359.76074 * 20 19 18 22 22 H 1.08998 * 109.47716 * 59.99707 * 1 2 3 23 23 H 1.08998 * 109.47044 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47165 * 299.99233 * 1 2 3 25 25 H 1.09009 * 109.46496 * 60.00149 * 3 2 1 26 26 H 1.08996 * 109.47282 * 300.00600 * 3 2 1 27 27 H 1.08995 * 109.47864 * 305.00496 * 4 3 2 28 28 H 1.09004 * 109.47270 * 184.99848 * 4 3 2 29 29 H 1.08999 * 109.47017 * 195.61161 * 6 5 4 30 30 H 1.08996 * 109.47122 * 315.61115 * 6 5 4 31 31 H 1.08999 * 109.47002 * 298.51937 * 7 6 5 32 32 H 1.09004 * 109.46831 * 58.51847 * 7 6 5 33 33 H 0.96996 * 120.00356 * 180.02562 * 11 10 8 34 34 H 1.08994 * 109.46943 * 319.64081 * 16 5 4 35 35 H 1.08997 * 109.46699 * 79.63823 * 16 5 4 36 36 H 1.08001 * 122.53469 * 359.95406 * 18 17 16 37 37 H 1.08001 * 122.54295 * 180.02562 * 19 18 17 38 38 H 1.07997 * 125.20054 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9778 0.5625 -1.2544 6 6 5.4035 0.2135 -1.1950 7 6 5.5871 -1.0369 -0.3325 8 6 7.0452 -1.4160 -0.3014 9 1 7.7687 -0.8246 -0.8429 10 6 7.4556 -2.5186 0.4177 11 7 6.5745 -3.2397 1.0759 12 14 9.2633 -2.9881 0.4569 13 1 9.9270 -2.3068 1.5973 14 1 9.3892 -4.4590 0.6178 15 1 9.9105 -2.5718 -0.8132 16 6 3.6967 1.4350 -2.4023 17 6 3.7017 0.6170 -3.6680 18 6 2.6676 -0.0846 -4.1343 19 6 2.9069 -0.7589 -5.3192 20 6 4.1354 -0.6045 -5.8155 21 16 5.0695 0.4485 -4.7609 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8901 25 1 1.6885 1.8463 0.8901 26 1 1.6886 1.8464 -0.8899 27 1 3.8508 0.5685 0.8426 28 1 3.9784 2.1766 0.0902 29 1 5.7719 0.0176 -2.2020 30 1 5.9623 1.0412 -0.7583 31 1 5.2430 -0.8326 0.6814 32 1 5.0072 -1.8577 -0.7546 33 1 6.8633 -4.0151 1.5821 34 1 2.7194 1.9003 -2.2743 35 1 4.4619 2.2086 -2.4665 36 1 1.7156 -0.1238 -3.6257 37 1 2.1557 -1.3636 -5.8055 38 1 4.4993 -1.0537 -6.7277 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053099760.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:36 Heat of formation + Delta-G solvation = -8.067408 kcal Electronic energy + Delta-G solvation = -18617.229979 eV Core-core repulsion = 15779.784768 eV Total energy + Delta-G solvation = -2837.445211 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.49260 -37.42670 -36.33736 -33.05650 -30.87303 -30.37077 -28.05088 -26.08183 -25.53893 -23.83454 -22.67887 -21.35984 -20.01583 -18.71172 -17.07670 -16.24648 -16.17515 -15.90939 -15.20477 -15.15050 -14.51682 -14.16057 -13.94575 -13.57483 -12.86969 -12.58308 -12.44022 -12.37984 -12.06695 -12.00351 -11.56257 -11.42428 -11.32168 -11.01856 -10.86340 -10.55025 -10.47415 -10.38083 -9.74631 -9.43425 -9.32166 -9.03020 -8.37321 -8.25462 -8.11114 -7.67004 -5.90275 -3.92578 1.28951 1.93618 2.29886 3.04830 3.36829 3.42948 3.46558 4.04838 4.43034 4.60278 5.04826 5.21793 5.28280 5.33209 5.41284 5.44366 5.45056 5.51583 5.54654 5.71318 5.77362 5.83364 5.85903 5.89663 6.22314 6.34506 6.42221 6.52295 6.61491 6.78802 7.08195 7.39942 7.53626 7.61970 7.86980 8.02724 8.21220 8.52969 9.15163 9.70224 11.20843 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012563 B = 0.006595 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.269884 B = 4244.336776 C = 5750.440444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.066 3.934 4 C 0.055 3.945 5 N -0.521 5.521 6 C 0.059 3.941 7 C 0.035 3.965 8 C -0.520 4.520 9 H 0.052 0.948 10 C 0.059 3.941 11 N -0.891 5.891 12 Si 0.889 3.111 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.118 3.882 17 C -0.149 4.149 18 C -0.127 4.127 19 C -0.133 4.133 20 C -0.222 4.222 21 S 0.094 5.906 22 H 0.034 0.966 23 H 0.083 0.917 24 H 0.033 0.967 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.020 0.980 31 H 0.015 0.985 32 H 0.025 0.975 33 H 0.259 0.741 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.835 10.423 -8.721 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.011 4.011 4 C -0.073 4.073 5 N -0.246 5.246 6 C -0.067 4.067 7 C -0.002 4.002 8 C -0.559 4.559 9 H 0.071 0.929 10 C -0.142 4.142 11 N -0.530 5.530 12 Si 0.717 3.283 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.011 4.011 17 C -0.267 4.267 18 C -0.158 4.158 19 C -0.164 4.164 20 C -0.358 4.358 21 S 0.357 5.643 22 H 0.052 0.948 23 H 0.101 0.899 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.114 0.886 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.517 10.229 -8.706 16.462 hybrid contribution -0.175 -0.073 0.176 0.259 sum -9.692 10.156 -8.530 16.426 Atomic orbital electron populations 1.22694 0.82462 1.02445 0.99020 1.88141 1.18122 1.26870 1.95038 1.22629 0.94251 0.85214 0.98973 1.22159 0.92616 0.98018 0.94502 1.62058 1.20999 1.41113 1.00405 1.22475 0.83594 0.99340 1.01329 1.18997 0.95972 0.91219 0.94031 1.21201 0.93255 1.11277 1.30206 0.92943 1.24978 0.97243 0.96377 0.95634 1.69985 1.33310 1.17649 1.32086 0.86649 0.85759 0.77592 0.78311 1.20778 1.21249 1.19917 1.20584 1.01006 0.92149 0.87411 1.24340 0.96086 1.05856 1.00422 1.19988 1.00284 0.98946 0.96573 1.20118 0.96999 1.02238 0.97023 1.25521 0.98096 1.07153 1.05040 1.84298 1.16673 1.46761 1.16575 0.94755 0.89887 0.94801 0.93584 0.93834 0.88555 0.93972 0.91809 0.96180 0.96681 0.95624 0.93108 0.89763 0.94401 0.84620 0.84798 0.82405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.36 -5.98 10.65 -35.23 -0.38 -6.36 16 3 C 0.07 0.92 6.02 37.15 0.22 1.15 16 4 C 0.05 0.91 5.17 -3.83 -0.02 0.89 16 5 N -0.52 -9.71 4.30 -236.08 -1.02 -10.72 16 6 C 0.06 1.30 4.74 -3.82 -0.02 1.28 16 7 C 0.04 0.96 5.06 -27.89 -0.14 0.81 16 8 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 9 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 12 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 16 C 0.12 1.82 5.33 -4.98 -0.03 1.79 16 17 C -0.15 -2.36 5.46 -36.01 -0.20 -2.56 16 18 C -0.13 -1.90 10.05 -41.21 -0.41 -2.32 16 19 C -0.13 -1.82 10.18 -41.21 -0.42 -2.23 16 20 C -0.22 -3.04 11.23 29.04 0.33 -2.71 16 21 S 0.09 1.42 22.19 -107.50 -2.39 -0.96 16 22 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.04 0.53 6.08 -51.93 -0.32 0.22 16 27 H 0.10 1.84 6.64 -51.93 -0.35 1.50 16 28 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 29 H 0.06 1.41 6.26 -51.93 -0.33 1.08 16 30 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 31 H 0.01 0.43 6.83 -51.93 -0.35 0.07 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.08 1.12 5.82 -51.93 -0.30 0.81 16 35 H 0.04 0.56 8.00 -51.93 -0.42 0.14 16 36 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 38 H 0.16 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 326.80 15.07 4.92 4.92 Total: -1.00 -32.60 326.80 -8.94 -41.54 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -5.82 Total: -2.46 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 0.02 Total: -16.27 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.28 Total: -37.55 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.38 Total: -6.36 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.39 Total: -0.96 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.60 -8.94 -41.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053099760.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.470 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds