Wall clock time and date at job start Mon Mar 30 2020 00:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00176 * 2 1 4 4 C 1.52993 * 109.47445 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47015 * 65.00664 * 4 3 2 6 6 C 1.46901 * 111.00210 * 189.99966 * 5 4 3 7 7 C 1.53002 * 109.47301 * 75.60764 * 6 5 4 8 8 C 1.50691 * 109.47185 * 178.51782 * 7 6 5 9 9 H 1.08000 * 120.00355 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99796 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00434 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99726 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46830 * 89.99977 * 12 10 8 14 14 H 1.48499 * 109.46797 * 209.99740 * 12 10 8 15 15 H 1.48502 * 109.47381 * 329.99898 * 12 10 8 16 16 C 1.46903 * 111.00280 * 66.04161 * 5 4 3 17 17 C 1.50696 * 109.47092 * 199.64140 * 16 5 4 18 18 C 1.33388 * 125.20883 * 83.81202 * 17 16 5 19 19 C 1.38417 * 114.92688 * 179.97438 * 18 17 16 20 20 C 1.33396 * 114.91924 * 359.97438 * 19 18 17 21 21 S 1.75884 * 109.59146 * 359.76074 * 20 19 18 22 22 H 1.08998 * 109.47716 * 59.99707 * 1 2 3 23 23 H 1.08998 * 109.47044 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47165 * 299.99233 * 1 2 3 25 25 H 1.09009 * 109.46496 * 60.00149 * 3 2 1 26 26 H 1.08996 * 109.47282 * 300.00600 * 3 2 1 27 27 H 1.08995 * 109.47864 * 305.00496 * 4 3 2 28 28 H 1.09004 * 109.47270 * 184.99848 * 4 3 2 29 29 H 1.08999 * 109.47017 * 195.61161 * 6 5 4 30 30 H 1.08996 * 109.47122 * 315.61115 * 6 5 4 31 31 H 1.08999 * 109.47002 * 298.51937 * 7 6 5 32 32 H 1.09004 * 109.46831 * 58.51847 * 7 6 5 33 33 H 0.96996 * 120.00356 * 180.02562 * 11 10 8 34 34 H 1.08994 * 109.46943 * 319.64081 * 16 5 4 35 35 H 1.08997 * 109.46699 * 79.63823 * 16 5 4 36 36 H 1.08001 * 122.53469 * 359.95406 * 18 17 16 37 37 H 1.08001 * 122.54295 * 180.02562 * 19 18 17 38 38 H 1.07997 * 125.20054 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9778 0.5625 -1.2544 6 6 5.4035 0.2135 -1.1950 7 6 5.5871 -1.0369 -0.3325 8 6 7.0452 -1.4160 -0.3014 9 1 7.7687 -0.8246 -0.8429 10 6 7.4556 -2.5186 0.4177 11 7 6.5745 -3.2397 1.0759 12 14 9.2633 -2.9881 0.4569 13 1 9.9270 -2.3068 1.5973 14 1 9.3892 -4.4590 0.6178 15 1 9.9105 -2.5718 -0.8132 16 6 3.6967 1.4350 -2.4023 17 6 3.7017 0.6170 -3.6680 18 6 2.6676 -0.0846 -4.1343 19 6 2.9069 -0.7589 -5.3192 20 6 4.1354 -0.6045 -5.8155 21 16 5.0695 0.4485 -4.7609 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8901 25 1 1.6885 1.8463 0.8901 26 1 1.6886 1.8464 -0.8899 27 1 3.8508 0.5685 0.8426 28 1 3.9784 2.1766 0.0902 29 1 5.7719 0.0176 -2.2020 30 1 5.9623 1.0412 -0.7583 31 1 5.2430 -0.8326 0.6814 32 1 5.0072 -1.8577 -0.7546 33 1 6.8633 -4.0151 1.5821 34 1 2.7194 1.9003 -2.2743 35 1 4.4619 2.2086 -2.4665 36 1 1.7156 -0.1238 -3.6257 37 1 2.1557 -1.3636 -5.8055 38 1 4.4993 -1.0537 -6.7277 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053099760.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:36 Heat of formation + Delta-G solvation = -29.361248 kcal Electronic energy + Delta-G solvation = -18618.153349 eV Core-core repulsion = 15779.784768 eV Total energy + Delta-G solvation = -2838.368581 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.77071 -38.53056 -37.65739 -35.20873 -32.34383 -31.91732 -29.50645 -27.12865 -27.06623 -25.48450 -23.83535 -23.05417 -21.52540 -19.90045 -18.64190 -18.04085 -17.31727 -17.10171 -16.54244 -16.50406 -16.26002 -15.45135 -15.31752 -14.90943 -14.49943 -14.16585 -13.81967 -13.54487 -13.44363 -13.23389 -13.16904 -12.90736 -12.61603 -12.53595 -12.49812 -12.33979 -11.81062 -11.64711 -11.57912 -11.34576 -11.19569 -10.53364 -10.44019 -9.52293 -9.29732 -9.10521 -8.17170 -6.29133 0.15977 0.80974 1.18039 1.39228 1.41540 1.52598 1.93656 2.41289 3.00130 3.15180 3.15508 3.88361 4.09490 4.21028 4.25571 4.28200 4.32057 4.47166 4.56442 4.62729 4.64428 4.68424 4.75595 4.79875 4.81339 4.91808 5.00460 5.13479 5.30573 5.46894 5.49399 5.66375 5.70696 5.81223 6.12699 6.25752 6.34163 6.50361 6.88461 7.39625 8.94868 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012563 B = 0.006595 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.269884 B = 4244.336776 C = 5750.440444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.071 3.929 4 C 0.052 3.948 5 N -0.537 5.537 6 C 0.077 3.923 7 C 0.049 3.951 8 C -0.543 4.543 9 H 0.059 0.941 10 C 0.002 3.998 11 N -0.931 5.931 12 Si 0.965 3.035 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.263 1.263 16 C 0.122 3.878 17 C -0.172 4.172 18 C -0.130 4.130 19 C -0.141 4.141 20 C -0.217 4.217 21 S 0.062 5.938 22 H 0.053 0.947 23 H 0.082 0.918 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.024 0.976 31 H -0.011 1.011 32 H -0.017 1.017 33 H 0.263 0.737 34 H 0.110 0.890 35 H 0.045 0.955 36 H 0.145 0.855 37 H 0.161 0.839 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.010 11.319 -9.784 18.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.005 4.005 4 C -0.075 4.075 5 N -0.262 5.262 6 C -0.050 4.050 7 C 0.011 3.989 8 C -0.582 4.582 9 H 0.077 0.923 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.789 3.211 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.187 1.187 16 C -0.006 4.006 17 C -0.290 4.290 18 C -0.161 4.161 19 C -0.171 4.171 20 C -0.352 4.352 21 S 0.324 5.676 22 H 0.071 0.929 23 H 0.101 0.899 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.007 0.993 32 H 0.001 0.999 33 H 0.071 0.929 34 H 0.128 0.872 35 H 0.064 0.936 36 H 0.162 0.838 37 H 0.179 0.821 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -9.710 11.150 -9.775 17.725 hybrid contribution -0.219 -0.378 0.492 0.658 sum -9.929 10.772 -9.283 17.344 Atomic orbital electron populations 1.22859 0.80260 1.03093 1.00727 1.88079 1.20724 1.28531 1.95426 1.22656 0.91933 0.84786 1.01162 1.22204 0.95037 0.98074 0.92223 1.61900 1.18410 1.43415 1.02452 1.22046 0.86306 0.96912 0.99755 1.18760 0.94566 0.92295 0.93272 1.21619 0.94287 1.11810 1.30454 0.92312 1.25970 1.02570 0.96177 0.94920 1.70136 1.35943 1.18194 1.32818 0.85458 0.79303 0.77355 0.78992 1.19538 1.20718 1.18722 1.20636 1.02525 0.91663 0.85818 1.24484 0.96450 1.07097 1.00965 1.20273 1.00434 0.98404 0.96981 1.20438 0.97706 1.02279 0.96706 1.25874 0.97695 1.06243 1.05420 1.84357 1.17649 1.47931 1.17614 0.92889 0.89929 0.93112 0.91177 0.91556 0.92381 0.91620 0.92046 0.95820 0.99316 0.99893 0.92851 0.87212 0.93649 0.83779 0.82123 0.79846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -13.23 10.65 -148.98 -1.59 -14.82 16 3 C 0.07 1.86 6.02 71.98 0.43 2.30 16 4 C 0.05 1.72 5.17 86.30 0.45 2.16 16 5 N -0.54 -20.07 4.30 -900.82 -3.88 -23.95 16 6 C 0.08 3.46 4.74 86.30 0.41 3.87 16 7 C 0.05 2.76 5.06 29.85 0.15 2.91 16 8 C -0.54 -32.40 9.11 25.60 0.23 -32.16 16 9 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 10 C 0.00 0.09 5.46 84.66 0.46 0.55 16 11 N -0.93 -59.14 13.29 21.45 0.28 -58.86 16 12 Si 0.96 45.70 29.54 68.60 2.03 47.73 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 15 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 16 C 0.12 3.61 5.33 85.56 0.46 4.06 16 17 C -0.17 -5.30 5.46 24.59 0.13 -5.16 16 18 C -0.13 -3.70 10.05 21.21 0.21 -3.49 16 19 C -0.14 -3.57 10.18 21.22 0.22 -3.36 16 20 C -0.22 -5.54 11.23 66.72 0.75 -4.79 16 21 S 0.06 1.83 22.19 -56.49 -1.25 0.58 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.07 1.42 6.08 -2.39 -0.01 1.41 16 27 H 0.06 2.34 6.64 -2.39 -0.02 2.32 16 28 H 0.07 1.81 8.12 -2.39 -0.02 1.79 16 29 H 0.06 2.76 6.26 -2.39 -0.01 2.74 16 30 H 0.02 1.02 8.00 -2.39 -0.02 1.01 16 31 H -0.01 -0.70 6.83 -2.39 -0.02 -0.72 16 32 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 33 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 34 H 0.11 2.63 5.82 -2.39 -0.01 2.61 16 35 H 0.05 1.27 8.00 -2.39 -0.02 1.25 16 36 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 37 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.18 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -72.46 326.80 1.77 -70.68 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.03 Total: 9.89 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 5.15 Total: -31.26 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -3.59 Total: -82.80 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -1.59 Total: -14.82 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.25 Total: 0.58 kcal Total: -72.46 1.77 -70.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053099760.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.321 kcal (2) G-P(sol) polarization free energy of solvation -72.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds