Wall clock time and date at job start Mon Mar 30 2020 00:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36938 * 119.99795 * 2 1 4 4 H 1.07999 * 120.00057 * 154.61282 * 3 2 1 5 5 C 1.38818 * 120.00009 * 334.61699 * 3 2 1 6 6 N 1.31618 * 119.99903 * 3.91697 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 183.91431 * 5 3 2 8 8 H 1.48496 * 109.47372 * 90.00305 * 7 5 3 9 9 H 1.48506 * 109.46573 * 209.99724 * 7 5 3 10 10 H 1.48498 * 109.47266 * 329.99623 * 7 5 3 11 11 C 1.46497 * 120.00153 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46989 * 89.99649 * 11 2 1 13 13 H 1.09000 * 109.47403 * 304.99780 * 12 11 2 14 14 O 1.42903 * 109.46893 * 65.00381 * 12 11 2 15 15 C 1.53003 * 109.46833 * 185.00006 * 12 11 2 16 16 O 1.42899 * 109.46961 * 175.00222 * 15 12 11 17 17 C 1.35951 * 117.00171 * 179.97438 * 16 15 12 18 18 C 1.38702 * 120.02622 * 359.72414 * 17 16 15 19 19 C 1.38152 * 119.96624 * 179.78882 * 18 17 16 20 20 C 1.38455 * 120.03076 * 0.48424 * 19 18 17 21 21 F 1.35104 * 119.97033 * 179.72396 * 20 19 18 22 22 C 1.38453 * 120.05874 * 359.74909 * 20 19 18 23 23 C 1.38145 * 120.03261 * 0.02562 * 22 20 19 24 24 H 1.08991 * 109.47163 * 84.46679 * 1 2 3 25 25 H 1.08999 * 109.46913 * 324.45915 * 1 2 3 26 26 H 1.08999 * 109.46578 * 204.46726 * 1 2 3 27 27 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.47298 * 209.99836 * 11 2 1 29 29 H 1.08998 * 109.47020 * 329.99756 * 11 2 1 30 30 H 0.96695 * 114.00239 * 59.99918 * 14 12 11 31 31 H 1.09000 * 109.47373 * 294.99746 * 15 12 11 32 32 H 1.08993 * 109.47263 * 55.00143 * 15 12 11 33 33 H 1.07997 * 120.01811 * 0.02562 * 18 17 16 34 34 H 1.08005 * 119.98692 * 180.21143 * 19 18 17 35 35 H 1.08003 * 119.98390 * 179.97438 * 22 20 19 36 36 H 1.08000 * 120.01644 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1515 1.2311 0.4010 5 6 1.5561 2.3301 -0.5153 6 7 0.3085 2.2931 -0.9330 7 14 2.5280 3.9221 -0.6159 8 1 3.2253 3.9946 -1.9249 9 1 1.6027 5.0761 -0.4834 10 1 3.5285 3.9614 0.4808 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 1 1.5061 -1.7541 -1.9823 14 8 3.3210 -0.7715 -2.0818 15 6 3.1061 -3.0931 -1.4457 16 8 3.2380 -3.5553 -2.7915 17 6 3.8047 -4.7778 -2.9715 18 6 4.2300 -5.5139 -1.8755 19 6 4.8017 -6.7580 -2.0596 20 6 4.9595 -7.2658 -3.3380 21 9 5.5239 -8.4801 -3.5170 22 6 4.5398 -6.5299 -4.4332 23 6 3.9635 -5.2876 -4.2517 24 1 -0.3633 0.0991 -1.0228 25 1 -0.3633 0.8362 0.5974 26 1 -0.3632 -0.9354 0.4256 27 1 -0.1062 3.0925 -1.2935 28 1 3.1500 -1.1386 0.5133 29 1 1.6085 -2.0285 0.5130 30 1 4.1836 -0.6803 -1.6546 31 1 4.0919 -3.0301 -0.9850 32 1 2.4853 -3.7892 -0.8817 33 1 4.1107 -5.1164 -0.8785 34 1 5.1299 -7.3329 -1.2062 35 1 4.6639 -6.9270 -5.4299 36 1 3.6366 -4.7137 -5.1062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:19 Heat of formation + Delta-G solvation = -79.793822 kcal Electronic energy + Delta-G solvation = -20029.605025 eV Core-core repulsion = 16622.836348 eV Total energy + Delta-G solvation = -3406.768678 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.96027 -40.16923 -37.82545 -36.55218 -34.67481 -31.58892 -31.35524 -30.12728 -28.93192 -26.11867 -25.61060 -23.41730 -22.46233 -21.54520 -20.51919 -18.36113 -17.51388 -16.97665 -16.70524 -16.18804 -15.69624 -15.58861 -14.90428 -14.65936 -14.29514 -14.18295 -13.83790 -13.47876 -13.29882 -13.15043 -12.73741 -12.42987 -12.25390 -11.78221 -11.23001 -11.09240 -10.86925 -10.82016 -10.68569 -10.34247 -10.29621 -10.02221 -9.90439 -9.40556 -9.38507 -8.48059 -8.19726 -6.74737 -5.71589 -3.17426 0.96490 1.07132 3.14930 3.41029 3.41886 3.46789 3.48235 4.14372 4.48920 4.51727 4.58750 4.90829 4.92136 5.00520 5.14319 5.26348 5.33499 5.50116 5.52572 5.67470 5.78270 5.90051 5.92657 5.96942 6.01146 6.10313 6.34095 6.54869 6.69109 6.76765 7.35590 7.45256 7.75245 7.84845 8.35878 8.43962 9.25825 9.85323 10.34152 11.34000 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042219 B = 0.003386 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.048243 B = 8267.152060 C = 8465.650992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.593 5.593 3 C -0.248 4.248 4 H 0.067 0.933 5 C 0.009 3.991 6 N -0.909 5.909 7 Si 0.905 3.095 8 H -0.286 1.286 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.127 3.873 12 C 0.087 3.913 13 H 0.098 0.902 14 O -0.532 6.532 15 C 0.024 3.976 16 O -0.298 6.298 17 C 0.130 3.870 18 C -0.186 4.186 19 C -0.111 4.111 20 C 0.047 3.953 21 F -0.145 7.145 22 C -0.112 4.112 23 C -0.128 4.128 24 H 0.026 0.974 25 H 0.055 0.945 26 H -0.009 1.009 27 H 0.252 0.748 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.361 0.639 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.360 -17.023 -2.066 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.314 5.314 3 C -0.377 4.377 4 H 0.085 0.915 5 C -0.189 4.189 6 N -0.554 5.554 7 Si 0.735 3.265 8 H -0.213 1.213 9 H -0.219 1.219 10 H -0.207 1.207 11 C -0.002 4.002 12 C 0.024 3.976 13 H 0.116 0.884 14 O -0.334 6.334 15 C -0.053 4.053 16 O -0.211 6.211 17 C 0.083 3.917 18 C -0.205 4.205 19 C -0.130 4.130 20 C 0.028 3.972 21 F -0.124 7.124 22 C -0.131 4.131 23 C -0.147 4.147 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.010 0.990 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.206 0.794 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.635 -16.674 -2.641 18.139 hybrid contribution 1.093 0.419 0.336 1.218 sum 7.728 -16.254 -2.306 18.145 Atomic orbital electron populations 1.20929 0.82057 0.95462 0.99566 1.43867 1.02004 1.00243 1.85310 1.19069 0.99182 0.85898 1.33586 0.91513 1.25142 0.96511 0.98844 0.98414 1.70064 1.11338 1.27999 1.45961 0.86265 0.79235 0.83065 0.77977 1.21278 1.21854 1.20663 1.21444 0.96849 0.89684 0.92212 1.23106 0.93414 0.82485 0.98595 0.88426 1.86714 1.28293 1.62904 1.55518 1.24050 1.01082 0.98920 0.81202 1.86295 1.74876 1.29554 1.30331 1.19231 0.92851 0.85772 0.93836 1.21184 1.04410 0.95812 0.99094 1.20921 1.00003 0.96184 0.95918 1.17550 1.02573 0.82799 0.94313 1.91474 1.83104 1.41621 1.96217 1.20939 0.99276 0.94361 0.98552 1.20347 1.02869 0.95806 0.95688 0.95534 0.92600 0.99024 0.93748 0.93264 0.93505 0.79415 0.92015 0.91534 0.84395 0.84666 0.84261 0.84081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 8.99 59.85 0.54 4.56 16 2 N -0.59 -14.49 2.91 -181.12 -0.53 -15.02 16 3 C -0.25 -6.67 9.17 -15.06 -0.14 -6.80 16 4 H 0.07 1.74 7.83 -52.49 -0.41 1.32 16 5 C 0.01 0.25 5.38 -17.43 -0.09 0.16 16 6 N -0.91 -26.52 10.13 55.49 0.56 -25.96 16 7 Si 0.90 21.95 29.56 -169.99 -5.02 16.92 16 8 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 C 0.13 2.38 5.39 -4.04 -0.02 2.36 16 12 C 0.09 1.56 3.49 -26.73 -0.09 1.46 16 13 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 14 O -0.53 -10.75 12.78 -40.08 -0.51 -11.26 16 15 C 0.02 0.32 4.37 37.16 0.16 0.48 16 16 O -0.30 -4.48 10.10 -24.43 -0.25 -4.73 16 17 C 0.13 1.66 6.69 -39.24 -0.26 1.40 16 18 C -0.19 -2.05 9.04 -39.44 -0.36 -2.40 16 19 C -0.11 -1.15 10.02 -39.53 -0.40 -1.54 16 20 C 0.05 0.52 7.30 -39.42 -0.29 0.23 16 21 F -0.15 -1.66 17.27 2.25 0.04 -1.62 16 22 C -0.11 -1.16 10.02 -39.54 -0.40 -1.55 16 23 C -0.13 -1.47 9.98 -39.44 -0.39 -1.87 16 24 H 0.03 0.71 7.43 -51.93 -0.39 0.32 16 25 H 0.06 1.48 7.04 -51.93 -0.37 1.12 16 26 H -0.01 -0.18 7.83 -51.93 -0.41 -0.59 16 27 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.05 0.86 8.04 -51.93 -0.42 0.44 16 29 H 0.05 0.77 7.86 -51.93 -0.41 0.36 16 30 H 0.36 5.93 9.04 45.56 0.41 6.35 16 31 H 0.06 0.72 7.65 -51.93 -0.40 0.32 16 32 H 0.07 0.78 7.67 -51.93 -0.40 0.38 16 33 H 0.14 1.29 6.30 -52.49 -0.33 0.96 16 34 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 35 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 36 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 311.21 15.07 4.69 4.69 Total: -1.00 -31.58 311.21 -6.69 -38.27 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -3.93 Total: 2.22 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.74 Total: -3.52 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.03 Total: -40.98 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.76 Total: -15.99 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.58 -6.69 -38.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.522 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds