Wall clock time and date at job start Mon Mar 30 2020 00:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36938 * 119.99795 * 2 1 4 4 H 1.07999 * 120.00057 * 154.61282 * 3 2 1 5 5 C 1.38818 * 120.00009 * 334.61699 * 3 2 1 6 6 N 1.31618 * 119.99903 * 3.91697 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 183.91431 * 5 3 2 8 8 H 1.48496 * 109.47372 * 90.00305 * 7 5 3 9 9 H 1.48506 * 109.46573 * 209.99724 * 7 5 3 10 10 H 1.48498 * 109.47266 * 329.99623 * 7 5 3 11 11 C 1.46497 * 120.00153 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46989 * 89.99649 * 11 2 1 13 13 H 1.09000 * 109.47403 * 304.99780 * 12 11 2 14 14 O 1.42903 * 109.46893 * 65.00381 * 12 11 2 15 15 C 1.53003 * 109.46833 * 185.00006 * 12 11 2 16 16 O 1.42899 * 109.46961 * 175.00222 * 15 12 11 17 17 C 1.35951 * 117.00171 * 179.97438 * 16 15 12 18 18 C 1.38702 * 120.02622 * 359.72414 * 17 16 15 19 19 C 1.38152 * 119.96624 * 179.78882 * 18 17 16 20 20 C 1.38455 * 120.03076 * 0.48424 * 19 18 17 21 21 F 1.35104 * 119.97033 * 179.72396 * 20 19 18 22 22 C 1.38453 * 120.05874 * 359.74909 * 20 19 18 23 23 C 1.38145 * 120.03261 * 0.02562 * 22 20 19 24 24 H 1.08991 * 109.47163 * 84.46679 * 1 2 3 25 25 H 1.08999 * 109.46913 * 324.45915 * 1 2 3 26 26 H 1.08999 * 109.46578 * 204.46726 * 1 2 3 27 27 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.47298 * 209.99836 * 11 2 1 29 29 H 1.08998 * 109.47020 * 329.99756 * 11 2 1 30 30 H 0.96695 * 114.00239 * 59.99918 * 14 12 11 31 31 H 1.09000 * 109.47373 * 294.99746 * 15 12 11 32 32 H 1.08993 * 109.47263 * 55.00143 * 15 12 11 33 33 H 1.07997 * 120.01811 * 0.02562 * 18 17 16 34 34 H 1.08005 * 119.98692 * 180.21143 * 19 18 17 35 35 H 1.08003 * 119.98390 * 179.97438 * 22 20 19 36 36 H 1.08000 * 120.01644 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1515 1.2311 0.4010 5 6 1.5561 2.3301 -0.5153 6 7 0.3085 2.2931 -0.9330 7 14 2.5280 3.9221 -0.6159 8 1 3.2253 3.9946 -1.9249 9 1 1.6027 5.0761 -0.4834 10 1 3.5285 3.9614 0.4808 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 1 1.5061 -1.7541 -1.9823 14 8 3.3210 -0.7715 -2.0818 15 6 3.1061 -3.0931 -1.4457 16 8 3.2380 -3.5553 -2.7915 17 6 3.8047 -4.7778 -2.9715 18 6 4.2300 -5.5139 -1.8755 19 6 4.8017 -6.7580 -2.0596 20 6 4.9595 -7.2658 -3.3380 21 9 5.5239 -8.4801 -3.5170 22 6 4.5398 -6.5299 -4.4332 23 6 3.9635 -5.2876 -4.2517 24 1 -0.3633 0.0991 -1.0228 25 1 -0.3633 0.8362 0.5974 26 1 -0.3632 -0.9354 0.4256 27 1 -0.1062 3.0925 -1.2935 28 1 3.1500 -1.1386 0.5133 29 1 1.6085 -2.0285 0.5130 30 1 4.1836 -0.6803 -1.6546 31 1 4.0919 -3.0301 -0.9850 32 1 2.4853 -3.7892 -0.8817 33 1 4.1107 -5.1164 -0.8785 34 1 5.1299 -7.3329 -1.2062 35 1 4.6639 -6.9270 -5.4299 36 1 3.6366 -4.7137 -5.1062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:19 Heat of formation + Delta-G solvation = -100.917801 kcal Electronic energy + Delta-G solvation = -20030.521030 eV Core-core repulsion = 16622.836348 eV Total energy + Delta-G solvation = -3407.684682 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.81363 -41.12693 -39.06397 -37.82410 -36.44017 -33.33473 -32.31112 -31.41072 -30.05201 -27.97580 -27.18446 -24.49884 -23.58977 -22.77037 -22.10165 -19.32282 -18.83509 -18.34824 -17.88600 -17.35630 -17.02769 -16.57110 -16.46007 -15.73040 -15.66812 -15.58131 -15.05226 -14.75336 -14.62624 -14.42071 -13.96936 -13.70574 -13.37516 -13.18567 -12.99766 -12.76637 -12.56261 -12.16059 -12.07688 -11.98520 -11.80502 -11.77635 -11.60473 -10.88688 -10.55402 -10.18693 -9.09925 -8.71250 -7.78846 -5.25102 0.16501 0.20583 1.47537 1.51413 1.57120 2.14056 2.55123 2.57247 3.32169 3.39272 3.59805 3.68330 3.77846 3.83684 4.03189 4.11719 4.15349 4.32100 4.41666 4.47469 4.55682 4.69043 4.88713 4.91117 4.91909 5.11787 5.14170 5.23809 5.26984 5.42026 5.67548 5.72503 5.81160 6.37277 6.42877 7.06096 7.22524 7.91003 8.34322 9.25938 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.042219 B = 0.003386 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.048243 B = 8267.152060 C = 8465.650992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.613 5.613 3 C -0.243 4.243 4 H 0.077 0.923 5 C -0.055 4.055 6 N -0.943 5.943 7 Si 0.965 3.035 8 H -0.292 1.292 9 H -0.299 1.299 10 H -0.264 1.264 11 C 0.125 3.875 12 C 0.094 3.906 13 H 0.064 0.936 14 O -0.564 6.564 15 C 0.035 3.965 16 O -0.325 6.325 17 C 0.108 3.892 18 C -0.184 4.184 19 C -0.110 4.110 20 C 0.037 3.963 21 F -0.149 7.149 22 C -0.110 4.110 23 C -0.139 4.139 24 H -0.007 1.007 25 H 0.026 0.974 26 H 0.029 0.971 27 H 0.243 0.757 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.375 0.625 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.109 -18.866 -1.077 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.336 5.336 3 C -0.373 4.373 4 H 0.094 0.906 5 C -0.249 4.249 6 N -0.591 5.591 7 Si 0.794 3.206 8 H -0.220 1.220 9 H -0.226 1.226 10 H -0.189 1.189 11 C -0.002 4.002 12 C 0.031 3.969 13 H 0.082 0.918 14 O -0.369 6.369 15 C -0.040 4.040 16 O -0.239 6.239 17 C 0.062 3.938 18 C -0.202 4.202 19 C -0.128 4.128 20 C 0.017 3.983 21 F -0.128 7.128 22 C -0.128 4.128 23 C -0.158 4.158 24 H 0.012 0.988 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.223 0.777 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.175 0.825 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.429 -18.564 -1.634 20.453 hybrid contribution 0.602 0.832 0.027 1.028 sum 9.032 -17.731 -1.606 19.964 Atomic orbital electron populations 1.20623 0.82787 0.96043 0.97284 1.44089 1.02085 1.01719 1.85688 1.19447 0.99157 0.86922 1.31796 0.90563 1.25879 0.97430 1.02100 0.99457 1.70260 1.12787 1.28115 1.47961 0.85295 0.77983 0.79449 0.77862 1.21968 1.22625 1.18869 1.21633 0.97585 0.87919 0.93074 1.22747 0.92436 0.84817 0.96854 0.91793 1.86663 1.29499 1.64091 1.56666 1.23774 1.02433 0.96492 0.81317 1.86212 1.75832 1.30965 1.30889 1.19446 0.94012 0.85384 0.94944 1.21371 1.03750 0.95740 0.99377 1.21192 0.99169 0.96030 0.96442 1.17784 1.02709 0.82788 0.94982 1.91469 1.83182 1.41828 1.96277 1.21140 0.98370 0.93735 0.99591 1.20504 1.03236 0.96364 0.95684 0.98849 0.95566 0.95266 0.94722 0.91323 0.90582 0.77729 0.89493 0.89106 0.82499 0.82352 0.82233 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.76 8.99 127.77 1.15 9.91 16 2 N -0.61 -29.56 2.91 -726.94 -2.12 -31.67 16 3 C -0.24 -12.94 9.17 84.03 0.77 -12.17 16 4 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 5 C -0.05 -3.09 5.38 84.86 0.46 -2.63 16 6 N -0.94 -56.82 10.13 21.65 0.22 -56.61 16 7 Si 0.97 45.63 29.56 68.60 2.03 47.66 16 8 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 9 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 10 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 11 C 0.12 4.37 5.39 86.38 0.47 4.84 16 12 C 0.09 3.22 3.49 30.60 0.11 3.33 16 13 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 14 O -0.56 -22.43 12.78 -144.34 -1.84 -24.27 16 15 C 0.04 0.86 4.37 71.98 0.31 1.18 16 16 O -0.33 -9.30 10.10 -88.36 -0.89 -10.19 16 17 C 0.11 2.57 6.69 22.49 0.15 2.72 16 18 C -0.18 -3.48 9.04 22.36 0.20 -3.27 16 19 C -0.11 -1.92 10.02 22.30 0.22 -1.70 16 20 C 0.04 0.72 7.30 22.37 0.16 0.88 16 21 F -0.15 -3.07 17.27 44.97 0.78 -2.29 16 22 C -0.11 -2.05 10.02 22.30 0.22 -1.83 16 23 C -0.14 -3.02 9.98 22.36 0.22 -2.79 16 24 H -0.01 -0.38 7.43 -2.39 -0.02 -0.40 16 25 H 0.03 1.41 7.04 -2.39 -0.02 1.39 16 26 H 0.03 1.19 7.83 -2.39 -0.02 1.17 16 27 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.07 2.15 8.04 -2.39 -0.02 2.13 16 29 H 0.08 2.23 7.86 -2.39 -0.02 2.21 16 30 H 0.38 11.82 9.04 -74.06 -0.67 11.15 16 31 H 0.09 1.69 7.65 -2.39 -0.02 1.67 16 32 H 0.09 1.77 7.67 -2.39 -0.02 1.75 16 33 H 0.16 2.28 6.30 -2.91 -0.02 2.26 16 34 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -69.35 311.21 3.04 -66.31 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.42 Total: 12.60 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 4.45 Total: -1.53 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -1.90 Total: -88.28 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -2.74 Total: -34.47 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.29 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -69.35 3.04 -66.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.603 kcal (2) G-P(sol) polarization free energy of solvation -69.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds