Wall clock time and date at job start Mon Mar 30 2020 00:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47211 * 2 1 4 4 C 1.37103 * 120.00444 * 264.77275 * 3 2 1 5 5 H 1.07999 * 119.99505 * 138.85396 * 4 3 2 6 6 C 1.38950 * 120.00005 * 318.85832 * 4 3 2 7 7 N 1.31409 * 119.99790 * 341.82452 * 6 4 3 8 8 Si 1.86796 * 119.99878 * 161.83087 * 6 4 3 9 9 H 1.48500 * 109.47444 * 59.99912 * 8 6 4 10 10 H 1.48499 * 109.46864 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47074 * 299.99299 * 8 6 4 12 12 C 1.34778 * 119.99655 * 84.78087 * 3 2 1 13 13 O 1.21297 * 119.99769 * 180.02562 * 12 3 2 14 14 C 1.50696 * 120.00264 * 359.97438 * 12 3 2 15 15 O 1.42899 * 109.47212 * 180.02562 * 14 12 3 16 16 C 1.42902 * 113.99655 * 180.02562 * 15 14 12 17 17 C 1.50705 * 109.46962 * 180.02562 * 16 15 14 18 18 N 1.31126 * 126.55160 * 89.99667 * 17 16 15 19 19 C 1.34493 * 105.61592 * 179.97438 * 18 17 16 20 20 C 1.50703 * 126.28904 * 179.97438 * 19 18 17 21 21 N 1.29948 * 107.42405 * 0.02562 * 19 18 17 22 22 O 1.21305 * 110.24876 * 359.97438 * 21 19 18 23 23 H 1.09008 * 109.46714 * 299.99407 * 1 2 3 24 24 H 1.08996 * 109.47490 * 59.99223 * 1 2 3 25 25 H 1.08996 * 109.47224 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46714 * 240.00593 * 2 1 3 27 27 H 1.08996 * 109.47490 * 120.00777 * 2 1 3 28 28 H 0.97005 * 120.00013 * 180.02562 * 7 6 4 29 29 H 1.09008 * 109.46771 * 60.00413 * 14 12 3 30 30 H 1.08997 * 109.47052 * 300.00935 * 14 12 3 31 31 H 1.09000 * 109.47909 * 59.99490 * 16 15 14 32 32 H 1.09005 * 109.46813 * 299.99496 * 16 15 14 33 33 H 1.08997 * 109.47083 * 269.97792 * 20 19 18 34 34 H 1.09002 * 109.47018 * 29.97967 * 20 19 18 35 35 H 1.08996 * 109.46810 * 149.97403 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9915 -1.1824 5 1 2.0743 3.0219 -1.3533 6 6 3.0370 1.2843 -2.1607 7 7 3.6789 0.1819 -1.8454 8 14 3.0497 1.9008 -3.9239 9 1 3.6534 3.2568 -3.9699 10 1 3.8487 0.9749 -4.7662 11 1 1.6575 1.9610 -4.4373 12 6 2.1428 2.0518 1.1624 13 8 2.5467 3.1956 1.1624 14 6 1.7792 1.3812 2.4620 15 8 1.9951 2.2898 3.5436 16 6 1.6796 1.7494 4.8284 17 6 1.9427 2.7877 5.8885 18 7 1.0899 3.6747 6.3416 19 6 1.7604 4.3805 7.2695 20 6 1.2156 5.5240 8.0861 21 7 2.9646 3.8961 7.3318 22 8 3.0898 2.9802 6.5465 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 4.1596 -0.3116 -2.5282 29 1 2.4007 0.4965 2.6006 30 1 0.7297 1.0879 2.4382 31 1 2.2994 0.8726 5.0161 32 1 0.6281 1.4631 4.8538 33 1 1.3895 6.4621 7.5590 34 1 0.1451 5.3850 8.2370 35 1 1.7182 5.5518 9.0529 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074531902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:53 Heat of formation + Delta-G solvation = 0.582964 kcal Electronic energy + Delta-G solvation = -20233.749595 eV Core-core repulsion = 16850.386278 eV Total energy + Delta-G solvation = -3383.363317 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.64681 -38.91511 -37.40123 -36.12656 -34.92870 -33.31770 -32.11661 -29.55007 -29.48644 -28.64545 -26.78516 -24.40651 -23.63885 -22.30974 -21.63439 -19.29082 -18.25425 -17.62218 -16.93083 -16.46572 -16.02795 -15.87817 -15.20461 -14.76580 -14.17361 -14.04243 -13.76243 -13.75349 -13.11405 -12.98993 -12.72245 -12.55325 -12.11844 -11.94936 -11.70305 -11.47673 -11.40389 -11.12619 -11.05184 -10.99213 -10.48013 -10.38144 -10.18947 -10.06338 -9.62627 -8.94649 -8.40577 -7.47081 -6.35481 -4.04193 0.96577 2.06685 2.61996 3.19371 3.24768 3.27501 3.44123 3.80009 3.85477 3.95666 4.24333 4.74202 4.93374 4.96430 5.05589 5.09570 5.18793 5.26009 5.41328 5.45246 5.58701 5.71539 5.74620 5.88410 5.89044 6.13569 6.24957 6.41144 6.80674 7.03473 7.15325 7.56162 8.06546 8.26186 8.48911 9.16349 9.33382 9.96080 10.69932 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035523 B = 0.003684 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.039395 B = 7598.748837 C = 7877.424866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.100 3.900 3 N -0.439 5.439 4 C -0.309 4.309 5 H 0.089 0.911 6 C 0.040 3.960 7 N -0.872 5.872 8 Si 0.921 3.079 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.463 3.537 13 O -0.558 6.558 14 C 0.050 3.950 15 O -0.354 6.354 16 C 0.151 3.849 17 C 0.196 3.804 18 N -0.466 5.466 19 C 0.165 3.835 20 C -0.061 4.061 21 N -0.384 5.384 22 O 0.087 5.913 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.106 0.894 27 H 0.048 0.952 28 H 0.269 0.731 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.561 -1.878 13.611 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.024 4.024 3 N -0.161 5.161 4 C -0.437 4.437 5 H 0.107 0.893 6 C -0.165 4.165 7 N -0.509 5.509 8 Si 0.747 3.253 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.250 3.750 13 O -0.440 6.440 14 C -0.030 4.030 15 O -0.271 6.271 16 C 0.072 3.928 17 C -0.025 4.025 18 N -0.202 5.202 19 C -0.108 4.108 20 C -0.119 4.119 21 N -0.092 5.092 22 O 0.027 5.973 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.124 0.876 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.940 -0.734 14.037 15.260 hybrid contribution 0.017 -0.310 -0.942 0.992 sum -5.922 -1.044 13.095 14.409 Atomic orbital electron populations 1.22248 0.98074 1.00491 1.01705 1.21513 0.91717 0.85495 1.03647 1.43371 1.56607 1.11830 1.04270 1.19351 1.35151 0.98744 0.90405 0.89347 1.25437 0.93853 0.96547 1.00669 1.69910 1.29299 1.17510 1.34194 0.86093 0.78406 0.78907 0.81875 1.19668 1.20952 1.19815 1.19977 0.82721 0.88296 0.84048 1.90572 1.48697 1.18361 1.86325 1.22567 1.00894 0.92539 0.86969 1.88100 1.87881 1.39107 1.12009 1.20600 1.02278 0.89438 0.80452 1.28290 0.80968 0.97023 0.96206 1.71894 1.31186 1.06234 1.10879 1.25930 0.87204 1.00629 0.97042 1.20134 1.02028 0.92051 0.97720 1.74631 1.20163 1.02441 1.11939 1.85300 1.35917 1.38164 1.37882 0.93905 0.92189 0.92914 0.87598 0.93400 0.92135 0.90667 0.91037 0.89182 0.88410 0.89214 0.89006 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 10.15 37.16 0.38 -2.38 16 2 C 0.10 2.04 5.41 -4.05 -0.02 2.02 16 3 N -0.44 -10.88 2.50 -114.81 -0.29 -11.17 16 4 C -0.31 -8.48 8.84 -14.93 -0.13 -8.61 16 5 H 0.09 2.55 7.82 -52.49 -0.41 2.14 16 6 C 0.04 1.03 4.95 -17.47 -0.09 0.95 16 7 N -0.87 -23.08 11.61 55.50 0.64 -22.44 16 8 Si 0.92 20.39 29.59 -169.99 -5.03 15.36 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 C 0.46 11.41 7.67 -10.99 -0.08 11.33 16 13 O -0.56 -16.40 16.41 -14.37 -0.24 -16.64 16 14 C 0.05 0.89 5.02 36.00 0.18 1.07 16 15 O -0.35 -6.49 9.86 -55.14 -0.54 -7.03 16 16 C 0.15 1.89 6.56 36.01 0.24 2.12 16 17 C 0.20 2.85 8.14 -13.06 -0.11 2.74 16 18 N -0.47 -7.05 11.55 -9.87 -0.11 -7.17 16 19 C 0.16 2.26 8.22 -156.37 -1.28 0.98 16 20 C -0.06 -0.54 10.51 36.01 0.38 -0.16 16 21 N -0.38 -5.78 12.16 30.90 0.38 -5.40 16 22 O 0.09 1.31 11.31 18.12 0.20 1.51 16 23 H 0.04 0.65 6.60 -51.92 -0.34 0.31 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.11 2.40 5.76 -51.92 -0.30 2.10 16 27 H 0.05 0.85 6.66 -51.93 -0.35 0.51 16 28 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.08 1.16 7.41 -51.92 -0.38 0.77 16 30 H 0.07 1.06 6.54 -51.93 -0.34 0.72 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -34.59 307.86 -5.11 -39.70 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -4.22 Total: -1.41 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -0.54 Total: 10.04 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.62 Total: -46.18 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.57 Total: -22.16 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.59 -5.11 -39.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074531902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.279 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds