Wall clock time and date at job start Mon Mar 30 2020 00:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47211 * 2 1 4 4 C 1.37103 * 120.00444 * 264.77275 * 3 2 1 5 5 H 1.07999 * 119.99505 * 138.85396 * 4 3 2 6 6 C 1.38950 * 120.00005 * 318.85832 * 4 3 2 7 7 N 1.31409 * 119.99790 * 341.82452 * 6 4 3 8 8 Si 1.86796 * 119.99878 * 161.83087 * 6 4 3 9 9 H 1.48500 * 109.47444 * 59.99912 * 8 6 4 10 10 H 1.48499 * 109.46864 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47074 * 299.99299 * 8 6 4 12 12 C 1.34778 * 119.99655 * 84.78087 * 3 2 1 13 13 O 1.21297 * 119.99769 * 180.02562 * 12 3 2 14 14 C 1.50696 * 120.00264 * 359.97438 * 12 3 2 15 15 O 1.42899 * 109.47212 * 180.02562 * 14 12 3 16 16 C 1.42902 * 113.99655 * 180.02562 * 15 14 12 17 17 C 1.50705 * 109.46962 * 180.02562 * 16 15 14 18 18 N 1.31126 * 126.55160 * 89.99667 * 17 16 15 19 19 C 1.34493 * 105.61592 * 179.97438 * 18 17 16 20 20 C 1.50703 * 126.28904 * 179.97438 * 19 18 17 21 21 N 1.29948 * 107.42405 * 0.02562 * 19 18 17 22 22 O 1.21305 * 110.24876 * 359.97438 * 21 19 18 23 23 H 1.09008 * 109.46714 * 299.99407 * 1 2 3 24 24 H 1.08996 * 109.47490 * 59.99223 * 1 2 3 25 25 H 1.08996 * 109.47224 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46714 * 240.00593 * 2 1 3 27 27 H 1.08996 * 109.47490 * 120.00777 * 2 1 3 28 28 H 0.97005 * 120.00013 * 180.02562 * 7 6 4 29 29 H 1.09008 * 109.46771 * 60.00413 * 14 12 3 30 30 H 1.08997 * 109.47052 * 300.00935 * 14 12 3 31 31 H 1.09000 * 109.47909 * 59.99490 * 16 15 14 32 32 H 1.09005 * 109.46813 * 299.99496 * 16 15 14 33 33 H 1.08997 * 109.47083 * 269.97792 * 20 19 18 34 34 H 1.09002 * 109.47018 * 29.97967 * 20 19 18 35 35 H 1.08996 * 109.46810 * 149.97403 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9915 -1.1824 5 1 2.0743 3.0219 -1.3533 6 6 3.0370 1.2843 -2.1607 7 7 3.6789 0.1819 -1.8454 8 14 3.0497 1.9008 -3.9239 9 1 3.6534 3.2568 -3.9699 10 1 3.8487 0.9749 -4.7662 11 1 1.6575 1.9610 -4.4373 12 6 2.1428 2.0518 1.1624 13 8 2.5467 3.1956 1.1624 14 6 1.7792 1.3812 2.4620 15 8 1.9951 2.2898 3.5436 16 6 1.6796 1.7494 4.8284 17 6 1.9427 2.7877 5.8885 18 7 1.0899 3.6747 6.3416 19 6 1.7604 4.3805 7.2695 20 6 1.2156 5.5240 8.0861 21 7 2.9646 3.8961 7.3318 22 8 3.0898 2.9802 6.5465 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 4.1596 -0.3116 -2.5282 29 1 2.4007 0.4965 2.6006 30 1 0.7297 1.0879 2.4382 31 1 2.2994 0.8726 5.0161 32 1 0.6281 1.4631 4.8538 33 1 1.3895 6.4621 7.5590 34 1 0.1451 5.3850 8.2370 35 1 1.7182 5.5518 9.0529 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074531902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:52 Heat of formation + Delta-G solvation = -25.102649 kcal Electronic energy + Delta-G solvation = -20234.863407 eV Core-core repulsion = 16850.386278 eV Total energy + Delta-G solvation = -3384.477129 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.71691 -40.60122 -38.80476 -37.18638 -36.82032 -34.40820 -34.01879 -31.14013 -30.46146 -29.87717 -28.14031 -26.20835 -24.69390 -23.87903 -22.64917 -21.04165 -19.37160 -18.90015 -18.57447 -17.98614 -17.30613 -17.26510 -16.93546 -16.21387 -15.75183 -15.48712 -15.00891 -14.55099 -14.51446 -14.41261 -13.97592 -13.63851 -13.54957 -13.33587 -13.11843 -12.94368 -12.82230 -12.62592 -12.48917 -12.26010 -12.21202 -12.08410 -11.79169 -11.12719 -10.93064 -10.77236 -10.32912 -9.40521 -8.34447 -6.11104 -0.12712 1.01399 1.40739 1.42326 1.51813 1.59597 2.02259 2.23718 2.45773 2.72693 2.98427 3.01112 3.42548 3.80822 3.99437 4.15239 4.16309 4.25385 4.35920 4.44948 4.48212 4.55075 4.66562 4.67899 4.80920 4.90761 5.05172 5.08634 5.36536 5.46294 5.59856 5.85737 6.25055 6.58188 6.99519 7.19731 7.43952 8.06011 8.69032 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035523 B = 0.003684 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.039395 B = 7598.748837 C = 7877.424866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.097 3.903 3 N -0.449 5.449 4 C -0.346 4.346 5 H 0.058 0.942 6 C 0.008 3.992 7 N -0.887 5.887 8 Si 0.980 3.020 9 H -0.281 1.281 10 H -0.270 1.270 11 H -0.262 1.262 12 C 0.441 3.559 13 O -0.625 6.625 14 C 0.067 3.933 15 O -0.396 6.396 16 C 0.148 3.852 17 C 0.191 3.809 18 N -0.487 5.487 19 C 0.162 3.838 20 C -0.062 4.062 21 N -0.405 5.405 22 O 0.073 5.927 23 H 0.059 0.941 24 H 0.037 0.963 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.274 0.726 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.795 -3.496 14.383 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.026 4.026 3 N -0.170 5.170 4 C -0.474 4.474 5 H 0.076 0.924 6 C -0.195 4.195 7 N -0.524 5.524 8 Si 0.804 3.196 9 H -0.207 1.207 10 H -0.194 1.194 11 H -0.186 1.186 12 C 0.230 3.770 13 O -0.511 6.511 14 C -0.012 4.012 15 O -0.314 6.314 16 C 0.070 3.930 17 C -0.030 4.030 18 N -0.224 5.224 19 C -0.111 4.111 20 C -0.120 4.120 21 N -0.116 5.116 22 O 0.017 5.983 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.116 0.884 34 H 0.126 0.874 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.191 -2.425 14.807 16.638 hybrid contribution 0.410 0.204 -1.132 1.221 sum -6.780 -2.220 13.675 15.424 Atomic orbital electron populations 1.22146 0.94974 1.02828 1.01506 1.21698 0.94234 0.82897 1.03784 1.43690 1.56165 1.13289 1.03831 1.19294 1.37089 0.98242 0.92739 0.92429 1.26114 0.92955 0.96597 1.03828 1.69963 1.29091 1.17974 1.35398 0.85208 0.78979 0.77940 0.77485 1.20710 1.19445 1.18612 1.21162 0.81666 0.87795 0.86344 1.90517 1.51633 1.21304 1.87657 1.22357 1.03488 0.91814 0.83493 1.88014 1.88656 1.40717 1.14038 1.21071 1.05056 0.89512 0.77328 1.28812 0.80667 0.97175 0.96310 1.71922 1.31935 1.06865 1.11655 1.26775 0.86736 1.00962 0.96598 1.20392 1.03064 0.90586 0.97921 1.74621 1.21070 1.03122 1.12833 1.85266 1.36344 1.38470 1.38258 0.92213 0.94327 0.89194 0.90165 0.90461 0.91593 0.87630 0.87272 0.85366 0.85215 0.88358 0.87361 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.74 10.15 71.98 0.73 -4.01 16 2 C 0.10 3.76 5.41 86.38 0.47 4.23 16 3 N -0.45 -22.43 2.50 -635.54 -1.59 -24.02 16 4 C -0.35 -19.59 8.84 84.04 0.74 -18.85 16 5 H 0.06 3.53 7.82 -2.91 -0.02 3.51 16 6 C 0.01 0.44 4.95 84.93 0.42 0.86 16 7 N -0.89 -46.91 11.61 21.66 0.25 -46.66 16 8 Si 0.98 42.11 29.59 68.60 2.03 44.14 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 12 C 0.44 21.92 7.67 87.66 0.67 22.59 16 13 O -0.63 -38.27 16.41 15.95 0.26 -38.01 16 14 C 0.07 2.23 5.02 71.23 0.36 2.59 16 15 O -0.40 -13.92 9.86 -129.94 -1.28 -15.20 16 16 C 0.15 3.28 6.56 71.24 0.47 3.74 16 17 C 0.19 5.33 8.14 88.38 0.72 6.05 16 18 N -0.49 -14.24 11.55 -303.19 -3.50 -17.75 16 19 C 0.16 4.30 8.22 138.46 1.14 5.44 16 20 C -0.06 -0.99 10.51 71.24 0.75 -0.24 16 21 N -0.41 -12.05 12.16 -60.31 -0.73 -12.79 16 22 O 0.07 2.16 11.31 74.88 0.85 3.00 16 23 H 0.06 1.60 6.60 -2.38 -0.02 1.58 16 24 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.08 3.57 5.76 -2.38 -0.01 3.55 16 27 H 0.08 2.50 6.66 -2.39 -0.02 2.49 16 28 H 0.27 13.56 8.31 -92.70 -0.77 12.79 16 29 H 0.11 2.84 7.41 -2.38 -0.02 2.83 16 30 H 0.11 2.77 6.54 -2.39 -0.02 2.76 16 31 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -79.97 307.86 3.86 -76.11 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.11 Total: 8.76 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 6.46 Total: 22.40 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -5.58 Total: -101.21 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -0.17 Total: -50.20 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -79.97 3.86 -76.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074531902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.009 kcal (2) G-P(sol) polarization free energy of solvation -79.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds