Wall clock time and date at job start Mon Mar 30 2020 00:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.46779 * 2 1 4 4 C 1.46906 * 110.99465 * 199.58471 * 3 2 1 5 5 C 1.53001 * 109.47281 * 66.04481 * 4 3 2 6 6 C 1.52992 * 109.47058 * 179.97438 * 5 4 3 7 7 S 1.80999 * 109.47197 * 179.97438 * 6 5 4 8 8 C 1.76199 * 99.99988 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00579 * 359.97438 * 8 7 6 10 10 C 1.38809 * 119.99980 * 179.97438 * 8 7 6 11 11 N 1.31629 * 119.99882 * 0.02562 * 10 8 7 12 12 Si 1.86791 * 119.99932 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47552 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47171 * 120.00183 * 12 10 8 15 15 H 1.48503 * 109.47250 * 240.00070 * 12 10 8 16 16 C 1.46892 * 111.00130 * 75.63193 * 3 2 1 17 17 C 1.50705 * 109.46894 * 199.74842 * 16 3 2 18 18 C 1.41378 * 126.58379 * 84.62378 * 17 16 3 19 19 C 1.34513 * 106.84334 * 180.02562 * 18 17 16 20 20 O 1.34301 * 108.42115 * 0.02562 * 19 18 17 21 21 C 1.34307 * 109.47382 * 359.97438 * 20 19 18 22 22 H 1.09000 * 109.47586 * 54.83971 * 1 2 3 23 23 H 1.08999 * 109.47598 * 174.84767 * 1 2 3 24 24 H 1.09006 * 109.47114 * 294.84145 * 1 2 3 25 25 H 1.08995 * 109.47151 * 239.99934 * 2 1 3 26 26 H 1.09003 * 109.46786 * 119.99547 * 2 1 3 27 27 H 1.08999 * 109.46897 * 186.04326 * 4 3 2 28 28 H 1.08996 * 109.47076 * 306.03895 * 4 3 2 29 29 H 1.08999 * 109.47028 * 299.99764 * 5 4 3 30 30 H 1.08993 * 109.47063 * 59.99847 * 5 4 3 31 31 H 1.08997 * 109.47470 * 300.00067 * 6 5 4 32 32 H 1.09005 * 109.47401 * 59.99595 * 6 5 4 33 33 H 0.96997 * 119.99783 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.47469 * 79.74930 * 16 3 2 35 35 H 1.09002 * 109.47206 * 319.74363 * 16 3 2 36 36 H 1.08004 * 126.57655 * 359.77757 * 18 17 16 37 37 H 1.08002 * 125.78881 * 180.02562 * 19 18 17 38 38 H 1.08002 * 125.78498 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4133 1.4506 -0.4597 5 6 3.4847 1.0392 -1.9317 6 6 4.9361 1.1082 -2.4106 7 16 5.0208 0.6208 -4.1516 8 6 6.7523 0.7873 -4.4321 9 1 7.4006 1.1100 -3.6310 10 6 7.2832 0.5036 -5.6829 11 7 6.4930 0.1107 -6.6596 12 14 9.1188 0.6808 -5.9805 13 1 9.7813 1.1342 -4.7312 14 1 9.6825 -0.6302 -6.3914 15 1 9.3520 1.6787 -7.0552 16 6 1.8742 1.9948 1.3284 17 6 1.9142 3.4958 1.1993 18 6 0.8263 4.3442 0.8904 19 6 1.3044 5.6015 0.8761 20 8 2.6168 5.5597 1.1577 21 6 2.9921 4.2852 1.3548 22 1 -0.3634 0.5918 -0.8401 23 1 -0.3634 -1.0235 -0.0923 24 1 -0.3634 0.4318 0.9326 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.7849 2.4693 -0.3488 28 1 4.0249 0.7738 0.1368 29 1 3.1131 0.0206 -2.0426 30 1 2.8732 1.7161 -2.5282 31 1 5.3074 2.1270 -2.2997 32 1 5.5482 0.4316 -1.8140 33 1 6.8640 -0.0871 -7.5337 34 1 2.6896 1.6636 1.9715 35 1 0.9219 1.6930 1.7645 36 1 -0.1923 4.0407 0.6985 37 1 0.7301 6.4932 0.6726 38 1 3.9901 3.9511 1.5973 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074990009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:14 Heat of formation + Delta-G solvation = 3.799192 kcal Electronic energy + Delta-G solvation = -17861.508572 eV Core-core repulsion = 15024.577936 eV Total energy + Delta-G solvation = -2836.930636 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.57427 -38.20257 -33.79867 -32.90805 -32.39710 -30.69227 -29.30760 -26.77384 -25.53809 -24.20982 -22.07648 -21.65650 -20.48467 -20.11035 -17.59785 -17.38596 -16.09925 -15.68900 -15.30305 -15.06501 -14.78472 -14.55995 -14.15361 -13.90880 -13.47947 -12.94858 -12.82746 -12.72702 -12.18937 -12.01661 -11.77418 -11.64729 -11.47580 -11.14718 -11.05323 -10.95913 -10.72497 -10.58750 -10.15845 -9.76192 -9.46880 -9.04209 -8.62595 -8.28053 -8.25318 -6.49428 -6.20514 -3.90181 1.71920 2.52385 3.10364 3.22354 3.23988 3.31443 3.59032 4.06613 4.25188 4.67653 4.81743 4.91509 5.00207 5.15520 5.24233 5.24575 5.31262 5.42741 5.44265 5.50295 5.64264 5.73829 5.78054 5.79805 5.88774 5.98626 6.00345 6.09623 6.15404 6.22015 6.39341 6.43882 6.65069 6.79575 7.04847 7.12871 7.16731 7.63158 8.39297 9.25898 10.87790 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.021449 B = 0.003761 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.118694 B = 7443.113039 C = 8302.136363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 N -0.532 5.532 4 C 0.059 3.941 5 C -0.093 4.093 6 C -0.112 4.112 7 S -0.133 6.133 8 C -0.515 4.515 9 H 0.072 0.928 10 C 0.071 3.929 11 N -0.870 5.870 12 Si 0.918 3.082 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.122 3.878 17 C -0.165 4.165 18 C -0.193 4.193 19 C -0.049 4.049 20 O -0.178 6.178 21 C -0.039 4.039 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.084 0.916 26 H 0.032 0.968 27 H 0.073 0.927 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.266 0.734 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.199 0.801 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.387 5.250 17.495 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 N -0.257 5.257 4 C -0.070 4.070 5 C -0.131 4.131 6 C -0.261 4.261 7 S 0.095 5.905 8 C -0.664 4.664 9 H 0.090 0.910 10 C -0.138 4.138 11 N -0.505 5.505 12 Si 0.744 3.256 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.206 1.206 16 C -0.006 4.006 17 C -0.167 4.167 18 C -0.212 4.212 19 C -0.117 4.117 20 O -0.074 6.074 21 C -0.107 4.107 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.163 0.837 37 H 0.216 0.784 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -12.319 5.372 16.277 21.109 hybrid contribution 2.511 -0.115 1.062 2.729 sum -9.808 5.257 17.339 20.603 Atomic orbital electron populations 1.21768 0.95080 1.01350 1.02066 1.22187 0.96030 0.88780 1.01376 1.61970 1.21228 1.17783 1.24716 1.22205 0.87308 1.01087 0.96394 1.21285 0.95929 1.02032 0.93888 1.23227 0.97838 1.02738 1.02303 1.84632 1.13155 1.88253 1.04414 1.22741 0.91603 1.52354 0.99665 0.90967 1.25013 0.99050 0.94654 0.95085 1.70036 1.35063 1.43055 1.02394 0.86122 0.83131 0.77957 0.78357 1.19632 1.20592 1.20561 1.20392 1.01349 0.88800 0.90045 1.20297 0.93402 0.96268 1.06732 1.21656 1.00512 0.92348 1.06695 1.23979 0.81764 0.99867 1.06068 1.84063 1.25416 1.29392 1.68517 1.23869 0.99921 0.80647 1.06300 0.91674 0.92497 0.93282 0.89795 0.95013 0.90899 0.95106 0.91649 0.90853 0.92226 0.92430 0.92394 0.94123 0.90013 0.83666 0.78404 0.78624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.95 37.16 0.37 -1.05 16 2 C 0.04 0.50 5.55 -3.82 -0.02 0.48 16 3 N -0.53 -6.67 4.35 -236.07 -1.03 -7.70 16 4 C 0.06 0.83 4.78 -3.82 -0.02 0.81 16 5 C -0.09 -1.58 5.19 -26.73 -0.14 -1.72 16 6 C -0.11 -2.31 5.67 37.15 0.21 -2.10 16 7 S -0.13 -3.55 21.44 -107.50 -2.30 -5.85 16 8 C -0.52 -15.01 9.50 30.94 0.29 -14.72 16 9 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 10 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 11 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 12 Si 0.92 21.77 29.55 -169.99 -5.02 16.74 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 C 0.12 1.31 5.33 -4.98 -0.03 1.28 16 17 C -0.17 -1.89 5.22 -104.74 -0.55 -2.43 16 18 C -0.19 -2.08 10.87 -39.70 -0.43 -2.51 16 19 C -0.05 -0.50 12.09 29.42 0.36 -0.14 16 20 O -0.18 -2.11 10.65 5.70 0.06 -2.05 16 21 C -0.04 -0.43 11.04 29.42 0.32 -0.11 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.43 6.89 -51.93 -0.36 0.08 16 25 H 0.08 1.05 5.88 -51.93 -0.31 0.74 16 26 H 0.03 0.33 8.00 -51.93 -0.42 -0.08 16 27 H 0.07 1.03 6.66 -51.93 -0.35 0.68 16 28 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 29 H 0.06 1.11 6.25 -51.93 -0.32 0.78 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 32 H 0.06 1.17 8.14 -51.91 -0.42 0.75 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.04 0.41 8.00 -51.93 -0.42 -0.01 16 35 H 0.08 0.80 6.55 -51.93 -0.34 0.46 16 36 H 0.15 1.37 8.06 -52.48 -0.42 0.94 16 37 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.20 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -32.35 328.57 -8.19 -40.54 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.85 Total: -0.81 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 0.28 Total: -20.27 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: -0.29 Total: -33.25 kcal Atomic # 8 Polarization: -2.11 SS G_CDS: 0.06 Total: -2.05 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.35 -8.19 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.335 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds