Wall clock time and date at job start Mon Mar 30 2020 00:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.46779 * 2 1 4 4 C 1.46906 * 110.99465 * 199.58471 * 3 2 1 5 5 C 1.53001 * 109.47281 * 66.04481 * 4 3 2 6 6 C 1.52992 * 109.47058 * 179.97438 * 5 4 3 7 7 S 1.80999 * 109.47197 * 179.97438 * 6 5 4 8 8 C 1.76199 * 99.99988 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00579 * 359.97438 * 8 7 6 10 10 C 1.38809 * 119.99980 * 179.97438 * 8 7 6 11 11 N 1.31629 * 119.99882 * 0.02562 * 10 8 7 12 12 Si 1.86791 * 119.99932 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47552 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47171 * 120.00183 * 12 10 8 15 15 H 1.48503 * 109.47250 * 240.00070 * 12 10 8 16 16 C 1.46892 * 111.00130 * 75.63193 * 3 2 1 17 17 C 1.50705 * 109.46894 * 199.74842 * 16 3 2 18 18 C 1.41378 * 126.58379 * 84.62378 * 17 16 3 19 19 C 1.34513 * 106.84334 * 180.02562 * 18 17 16 20 20 O 1.34301 * 108.42115 * 0.02562 * 19 18 17 21 21 C 1.34307 * 109.47382 * 359.97438 * 20 19 18 22 22 H 1.09000 * 109.47586 * 54.83971 * 1 2 3 23 23 H 1.08999 * 109.47598 * 174.84767 * 1 2 3 24 24 H 1.09006 * 109.47114 * 294.84145 * 1 2 3 25 25 H 1.08995 * 109.47151 * 239.99934 * 2 1 3 26 26 H 1.09003 * 109.46786 * 119.99547 * 2 1 3 27 27 H 1.08999 * 109.46897 * 186.04326 * 4 3 2 28 28 H 1.08996 * 109.47076 * 306.03895 * 4 3 2 29 29 H 1.08999 * 109.47028 * 299.99764 * 5 4 3 30 30 H 1.08993 * 109.47063 * 59.99847 * 5 4 3 31 31 H 1.08997 * 109.47470 * 300.00067 * 6 5 4 32 32 H 1.09005 * 109.47401 * 59.99595 * 6 5 4 33 33 H 0.96997 * 119.99783 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.47469 * 79.74930 * 16 3 2 35 35 H 1.09002 * 109.47206 * 319.74363 * 16 3 2 36 36 H 1.08004 * 126.57655 * 359.77757 * 18 17 16 37 37 H 1.08002 * 125.78881 * 180.02562 * 19 18 17 38 38 H 1.08002 * 125.78498 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4133 1.4506 -0.4597 5 6 3.4847 1.0392 -1.9317 6 6 4.9361 1.1082 -2.4106 7 16 5.0208 0.6208 -4.1516 8 6 6.7523 0.7873 -4.4321 9 1 7.4006 1.1100 -3.6310 10 6 7.2832 0.5036 -5.6829 11 7 6.4930 0.1107 -6.6596 12 14 9.1188 0.6808 -5.9805 13 1 9.7813 1.1342 -4.7312 14 1 9.6825 -0.6302 -6.3914 15 1 9.3520 1.6787 -7.0552 16 6 1.8742 1.9948 1.3284 17 6 1.9142 3.4958 1.1993 18 6 0.8263 4.3442 0.8904 19 6 1.3044 5.6015 0.8761 20 8 2.6168 5.5597 1.1577 21 6 2.9921 4.2852 1.3548 22 1 -0.3634 0.5918 -0.8401 23 1 -0.3634 -1.0235 -0.0923 24 1 -0.3634 0.4318 0.9326 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.7849 2.4693 -0.3488 28 1 4.0249 0.7738 0.1368 29 1 3.1131 0.0206 -2.0426 30 1 2.8732 1.7161 -2.5282 31 1 5.3074 2.1270 -2.2997 32 1 5.5482 0.4316 -1.8140 33 1 6.8640 -0.0871 -7.5337 34 1 2.6896 1.6636 1.9715 35 1 0.9219 1.6930 1.7645 36 1 -0.1923 4.0407 0.6985 37 1 0.7301 6.4932 0.6726 38 1 3.9901 3.9511 1.5973 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074990009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:13 Heat of formation + Delta-G solvation = -15.754815 kcal Electronic energy + Delta-G solvation = -17862.356498 eV Core-core repulsion = 15024.577936 eV Total energy + Delta-G solvation = -2837.778562 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.37999 -39.19984 -34.92176 -34.59498 -33.96741 -31.55676 -30.20277 -28.09214 -27.50522 -25.30060 -23.25984 -22.45400 -21.55121 -21.00540 -19.56201 -18.36287 -16.98541 -16.90260 -16.82924 -16.42427 -16.02128 -15.84671 -15.49078 -15.02526 -14.71827 -14.39271 -13.83086 -13.59581 -13.46799 -13.22961 -13.15128 -12.94277 -12.82078 -12.63971 -12.53712 -12.31623 -12.20184 -11.86367 -11.46964 -11.32669 -11.14955 -10.56014 -10.31576 -9.43703 -9.20986 -8.67182 -8.37747 -6.14155 0.91880 1.31264 1.38160 1.49207 1.68544 1.77229 2.27982 2.36823 2.96540 3.06628 3.33240 3.91024 3.95055 3.99304 4.14192 4.14555 4.27363 4.37282 4.42456 4.52049 4.61183 4.65053 4.71150 4.74735 4.81598 4.89653 5.02754 5.12347 5.19692 5.20778 5.30317 5.34869 5.39502 5.42573 5.65594 6.12275 6.17995 6.19885 6.28457 7.04474 8.72075 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.021449 B = 0.003761 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.118694 B = 7443.113039 C = 8302.136363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.042 3.958 3 N -0.542 5.542 4 C 0.071 3.929 5 C -0.080 4.080 6 C -0.086 4.086 7 S -0.199 6.199 8 C -0.538 4.538 9 H 0.072 0.928 10 C 0.015 3.985 11 N -0.908 5.908 12 Si 0.995 3.005 13 H -0.263 1.263 14 H -0.270 1.270 15 H -0.271 1.271 16 C 0.125 3.875 17 C -0.179 4.179 18 C -0.211 4.211 19 C -0.050 4.050 20 O -0.194 6.194 21 C -0.052 4.052 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.271 0.729 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.155 0.845 37 H 0.230 0.770 38 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.007 5.591 18.881 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 N -0.267 5.267 4 C -0.059 4.059 5 C -0.119 4.119 6 C -0.235 4.235 7 S 0.030 5.970 8 C -0.686 4.686 9 H 0.090 0.910 10 C -0.189 4.189 11 N -0.544 5.544 12 Si 0.817 3.183 13 H -0.187 1.187 14 H -0.196 1.196 15 H -0.197 1.197 16 C -0.002 4.002 17 C -0.181 4.181 18 C -0.231 4.231 19 C -0.117 4.117 20 O -0.090 6.090 21 C -0.120 4.120 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.173 0.827 37 H 0.247 0.753 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -11.956 5.710 17.676 22.091 hybrid contribution 2.295 -0.204 0.683 2.403 sum -9.661 5.506 18.359 21.464 Atomic orbital electron populations 1.21720 0.93853 1.02001 1.02110 1.22225 0.97035 0.88122 1.01166 1.61918 1.19967 1.18649 1.26171 1.21978 0.88750 1.01135 0.94002 1.21158 0.93004 1.01832 0.95908 1.23139 1.00420 1.02409 0.97566 1.84657 1.13149 1.88928 1.10266 1.23077 0.92361 1.52900 1.00273 0.90959 1.26076 1.04498 0.93797 0.94564 1.70165 1.37516 1.43739 1.03004 0.84958 0.76386 0.78379 0.78591 1.18651 1.19567 1.19658 1.20420 1.02371 0.88330 0.89084 1.20508 0.93801 0.96722 1.07061 1.21924 1.01057 0.92769 1.07315 1.24646 0.81270 1.00962 1.04813 1.84063 1.26326 1.29818 1.68791 1.24273 1.00780 0.80530 1.06397 0.93000 0.91313 0.92076 0.91376 0.93772 0.90890 0.94192 0.91666 0.92296 0.92204 0.91887 0.91950 0.93151 0.88804 0.82683 0.75341 0.77006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.95 71.98 0.72 -1.77 16 2 C 0.04 0.88 5.55 86.30 0.48 1.36 16 3 N -0.54 -12.74 4.35 -900.79 -3.92 -16.67 16 4 C 0.07 1.88 4.78 86.30 0.41 2.30 16 5 C -0.08 -2.71 5.19 30.59 0.16 -2.55 16 6 C -0.09 -3.55 5.67 71.98 0.41 -3.14 16 7 S -0.20 -10.84 21.44 -56.49 -1.21 -12.05 16 8 C -0.54 -31.65 9.50 67.96 0.65 -31.00 16 9 H 0.07 4.10 7.80 -2.91 -0.02 4.07 16 10 C 0.02 0.89 5.49 84.86 0.47 1.36 16 11 N -0.91 -55.48 13.22 21.65 0.29 -55.20 16 12 Si 0.99 44.38 29.55 68.60 2.03 46.41 16 13 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 16 C 0.12 2.44 5.33 85.56 0.46 2.90 16 17 C -0.18 -3.83 5.22 -19.94 -0.10 -3.93 16 18 C -0.21 -4.27 10.87 22.19 0.24 -4.03 16 19 C -0.05 -0.93 12.09 66.97 0.81 -0.12 16 20 O -0.19 -4.36 10.65 -2.51 -0.03 -4.39 16 21 C -0.05 -1.09 11.04 66.97 0.74 -0.35 16 22 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 0.94 6.89 -2.38 -0.02 0.92 16 25 H 0.07 1.65 5.88 -2.39 -0.01 1.64 16 26 H 0.04 0.83 8.00 -2.39 -0.02 0.81 16 27 H 0.07 1.95 6.66 -2.39 -0.02 1.94 16 28 H 0.04 1.00 8.12 -2.39 -0.02 0.98 16 29 H 0.06 2.21 6.25 -2.39 -0.01 2.19 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.06 2.46 8.14 -2.40 -0.02 2.44 16 32 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.05 0.89 8.00 -2.39 -0.02 0.87 16 35 H 0.09 1.60 6.55 -2.39 -0.02 1.58 16 36 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.23 2.41 8.06 -2.91 -0.02 2.38 16 38 H 0.21 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -69.62 328.57 3.61 -66.01 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 1.03 Total: 14.85 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 5.43 Total: -38.97 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: -3.64 Total: -71.86 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.03 Total: -4.39 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -10.84 SS G_CDS: -1.21 Total: -12.05 kcal Total: -69.62 3.61 -66.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.256 kcal (2) G-P(sol) polarization free energy of solvation -69.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds