Wall clock time and date at job start Mon Mar 30 2020 00:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35905 * 116.99763 * 2 1 4 4 C 1.38822 * 120.01579 * 0.02562 * 3 2 1 5 5 C 1.38189 * 120.10356 * 179.97438 * 4 3 2 6 6 C 1.38141 * 120.13270 * 0.04570 * 5 4 3 7 7 C 1.38988 * 120.02844 * 359.97438 * 6 5 4 8 8 N 1.39589 * 120.04999 * 180.02562 * 7 6 5 9 9 C 1.38816 * 120.00040 * 327.97620 * 8 7 6 10 10 C 1.39604 * 119.84241 * 338.73478 * 9 8 7 11 11 C 1.36313 * 120.15809 * 179.72199 * 10 9 8 12 12 C 1.40911 * 119.83621 * 0.55117 * 11 10 9 13 13 C 1.41105 * 120.15041 * 179.69930 * 12 11 10 14 14 H 1.07999 * 119.99715 * 159.36242 * 13 12 11 15 15 C 1.39849 * 120.00210 * 339.36790 * 13 12 11 16 16 N 1.30910 * 119.99773 * 333.21777 * 15 13 12 17 17 Si 1.86804 * 119.99943 * 153.21777 * 15 13 12 18 18 H 1.48499 * 109.46785 * 94.97552 * 17 15 13 19 19 H 1.48500 * 109.46809 * 214.97446 * 17 15 13 20 20 H 1.48499 * 109.46897 * 334.97512 * 17 15 13 21 21 C 1.40906 * 119.69221 * 359.72242 * 12 11 10 22 22 C 1.36307 * 119.84136 * 359.97438 * 21 12 11 23 23 C 1.38557 * 120.01153 * 180.29392 * 3 2 1 24 24 H 1.08998 * 109.46953 * 300.00360 * 1 2 3 25 25 H 1.09005 * 109.46656 * 59.99869 * 1 2 3 26 26 H 1.08996 * 109.46927 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.95494 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.93934 * 180.02562 * 5 4 3 29 29 H 1.08003 * 119.98549 * 179.97438 * 6 5 4 30 30 H 0.97007 * 120.00206 * 148.24751 * 8 7 6 31 31 H 1.08000 * 119.92083 * 0.02562 * 10 9 8 32 32 H 1.07996 * 120.08205 * 180.27730 * 11 10 9 33 33 H 0.96998 * 119.99743 * 180.02562 * 16 15 13 34 34 H 1.07997 * 120.07702 * 179.97438 * 21 12 11 35 35 H 1.08002 * 119.92000 * 179.97438 * 22 21 12 36 36 H 1.08001 * 120.06938 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2902 2.3754 0.0005 5 6 1.9156 3.6076 0.0011 6 6 3.2948 3.6853 0.0001 7 6 4.0569 2.5230 -0.0008 8 7 5.4506 2.6009 -0.0013 9 6 6.0865 3.6577 -0.6383 10 6 5.4150 4.3775 -1.6282 11 6 6.0313 5.4200 -2.2540 12 6 7.3534 5.7631 -1.9076 13 6 7.9998 6.8370 -2.5556 14 1 8.8501 7.3146 -2.0915 15 6 7.5396 7.2829 -3.7986 16 7 6.9090 6.4591 -4.5970 17 14 7.8245 9.0541 -4.3196 18 1 9.0572 9.1353 -5.1436 19 1 6.6644 9.5284 -5.1160 20 1 7.9784 9.9062 -3.1132 21 6 8.0269 5.0285 -0.9116 22 6 7.3963 3.9924 -0.2897 23 6 3.4296 1.2838 -0.0062 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2117 2.3183 0.0005 28 1 1.3250 4.5118 0.0019 29 1 3.7812 4.6496 0.0001 30 1 5.9750 1.9145 0.4402 31 1 4.4032 4.1109 -1.8955 32 1 5.5091 5.9789 -3.0164 33 1 6.5901 6.7683 -5.4593 34 1 9.0405 5.2858 -0.6415 35 1 7.9115 3.4282 0.4736 36 1 4.0191 0.3789 -0.0114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082715049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:26 Heat of formation + Delta-G solvation = 12.488722 kcal Electronic energy + Delta-G solvation = -19150.097277 eV Core-core repulsion = 16178.099496 eV Total energy + Delta-G solvation = -2971.997781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98760 -38.53655 -36.97932 -34.77226 -33.12977 -30.62968 -29.75817 -29.27037 -27.98097 -27.12520 -24.64551 -22.58680 -21.59859 -20.95140 -20.15093 -17.86179 -17.38691 -16.63602 -15.86954 -15.65414 -15.46457 -15.23040 -15.09657 -14.01080 -13.64800 -13.27866 -13.11507 -12.87156 -12.49724 -12.19298 -12.06594 -12.00124 -11.61423 -11.40157 -11.14448 -11.07781 -10.89624 -10.72143 -10.62744 -9.92791 -9.78124 -9.42400 -9.01845 -8.22290 -7.86027 -7.59891 -6.91697 -6.51776 -4.20444 1.70255 1.80314 2.78564 3.00890 3.06302 3.09792 3.23131 3.30856 3.90969 4.13793 4.19597 4.56668 4.96948 5.10723 5.20025 5.27642 5.41972 5.65878 5.69180 5.71482 5.85800 6.09710 6.16339 6.27367 6.56746 6.66796 6.74814 6.83723 6.92636 6.99992 7.06717 7.18739 7.45453 7.54756 7.60258 7.72100 8.00306 8.14677 8.32657 8.47273 8.60091 8.86103 8.97158 10.10094 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031260 B = 0.003955 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.497343 B = 7078.566402 C = 7610.294326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.154 3.846 4 C -0.263 4.263 5 C -0.051 4.051 6 C -0.200 4.200 7 C 0.244 3.756 8 N -0.671 5.671 9 C 0.025 3.975 10 C -0.126 4.126 11 C -0.150 4.150 12 C 0.096 3.904 13 C -0.462 4.462 14 H 0.079 0.921 15 C 0.081 3.919 16 N -0.780 5.780 17 Si 0.900 3.100 18 H -0.271 1.271 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.209 4.209 22 C -0.119 4.119 23 C -0.222 4.222 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.132 0.868 30 H 0.396 0.604 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.282 0.718 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 -6.350 6.045 13.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.109 3.891 4 C -0.283 4.283 5 C -0.070 4.070 6 C -0.222 4.222 7 C 0.140 3.860 8 N -0.291 5.291 9 C -0.069 4.069 10 C -0.146 4.146 11 C -0.170 4.170 12 C 0.093 3.907 13 C -0.491 4.491 14 H 0.097 0.903 15 C -0.139 4.139 16 N -0.405 5.405 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.229 4.229 22 C -0.139 4.139 23 C -0.245 4.245 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.112 0.888 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.150 0.850 30 H 0.231 0.769 31 H 0.116 0.884 32 H 0.133 0.867 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.748 -6.442 5.723 13.011 hybrid contribution 0.071 0.574 -0.260 0.634 sum -9.678 -5.868 5.463 12.567 Atomic orbital electron populations 1.22972 0.78898 1.03286 1.01295 1.86022 1.20987 1.27584 1.88994 1.18600 0.91580 0.83695 0.95247 1.20897 0.99212 0.92351 1.15880 1.20665 0.93984 0.96627 0.95686 1.21050 0.93480 0.98363 1.09273 1.17404 0.84024 0.92271 0.92284 1.41632 1.01912 1.26991 1.58577 1.17169 0.94165 0.95679 0.99913 1.20371 0.99103 0.98525 0.96611 1.20833 0.95095 0.99060 1.02032 1.17575 0.91206 0.91062 0.90811 1.19465 1.13722 1.13838 1.02060 0.90333 1.25913 0.93088 0.98967 0.95902 1.69923 1.27691 1.35376 1.07466 0.86437 0.78771 0.83032 0.79368 1.19582 1.19963 1.18278 1.20470 0.98916 0.99260 1.04250 1.19928 0.93970 0.99285 1.00753 1.19866 0.91575 0.97033 1.16015 0.92861 0.92790 0.88755 0.86367 0.86195 0.85010 0.76947 0.88374 0.86711 0.90750 0.88727 0.89251 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.44 10.49 -19.44 -0.20 -4.65 16 3 C 0.15 2.36 6.68 -39.25 -0.26 2.10 16 4 C -0.26 -3.72 9.04 -39.38 -0.36 -4.08 16 5 C -0.05 -0.76 10.03 -39.63 -0.40 -1.16 16 6 C -0.20 -3.49 7.54 -39.34 -0.30 -3.79 16 7 C 0.24 4.32 5.94 -83.81 -0.50 3.82 16 8 N -0.67 -12.31 5.43 -8.32 -0.05 -12.35 16 9 C 0.02 0.54 6.19 -83.68 -0.52 0.02 16 10 C -0.13 -2.93 7.69 -39.77 -0.31 -3.23 16 11 C -0.15 -3.85 8.70 -39.26 -0.34 -4.19 16 12 C 0.10 2.52 5.60 -106.79 -0.60 1.92 16 13 C -0.46 -12.05 8.99 -37.89 -0.34 -12.39 16 14 H 0.08 1.97 7.97 -52.49 -0.42 1.55 16 15 C 0.08 2.00 4.95 -17.34 -0.09 1.91 16 16 N -0.78 -19.90 11.27 55.54 0.63 -19.27 16 17 Si 0.90 18.26 29.63 -169.99 -5.04 13.22 16 18 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 20 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 21 C -0.21 -5.01 9.74 -39.27 -0.38 -5.40 16 22 C -0.12 -2.59 9.86 -39.77 -0.39 -2.98 16 23 C -0.22 -3.63 9.90 -39.22 -0.39 -4.02 16 24 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 25 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.12 1.36 6.29 -52.48 -0.33 1.03 16 28 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.13 2.48 6.40 -52.48 -0.34 2.15 16 30 H 0.40 6.27 8.86 -40.82 -0.36 5.91 16 31 H 0.10 2.19 5.95 -52.49 -0.31 1.88 16 32 H 0.12 3.03 6.21 -52.49 -0.33 2.70 16 33 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 34 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 36 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 304.47 15.07 4.59 4.59 Total: -1.00 -27.95 304.47 -8.37 -36.32 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -4.13 Total: 12.34 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: -4.17 Total: -30.19 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.58 Total: -31.63 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.20 Total: -4.65 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.04 Total: 13.22 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.95 -8.37 -36.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082715049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.808 kcal (2) G-P(sol) polarization free energy of solvation -27.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds