Wall clock time and date at job start Mon Mar 30 2020 00:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35905 * 116.99763 * 2 1 4 4 C 1.38822 * 120.01579 * 0.02562 * 3 2 1 5 5 C 1.38189 * 120.10356 * 179.97438 * 4 3 2 6 6 C 1.38141 * 120.13270 * 0.04570 * 5 4 3 7 7 C 1.38988 * 120.02844 * 359.97438 * 6 5 4 8 8 N 1.39589 * 120.04999 * 180.02562 * 7 6 5 9 9 C 1.38816 * 120.00040 * 327.97620 * 8 7 6 10 10 C 1.39604 * 119.84241 * 338.73478 * 9 8 7 11 11 C 1.36313 * 120.15809 * 179.72199 * 10 9 8 12 12 C 1.40911 * 119.83621 * 0.55117 * 11 10 9 13 13 C 1.41105 * 120.15041 * 179.69930 * 12 11 10 14 14 H 1.07999 * 119.99715 * 159.36242 * 13 12 11 15 15 C 1.39849 * 120.00210 * 339.36790 * 13 12 11 16 16 N 1.30910 * 119.99773 * 333.21777 * 15 13 12 17 17 Si 1.86804 * 119.99943 * 153.21777 * 15 13 12 18 18 H 1.48499 * 109.46785 * 94.97552 * 17 15 13 19 19 H 1.48500 * 109.46809 * 214.97446 * 17 15 13 20 20 H 1.48499 * 109.46897 * 334.97512 * 17 15 13 21 21 C 1.40906 * 119.69221 * 359.72242 * 12 11 10 22 22 C 1.36307 * 119.84136 * 359.97438 * 21 12 11 23 23 C 1.38557 * 120.01153 * 180.29392 * 3 2 1 24 24 H 1.08998 * 109.46953 * 300.00360 * 1 2 3 25 25 H 1.09005 * 109.46656 * 59.99869 * 1 2 3 26 26 H 1.08996 * 109.46927 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.95494 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.93934 * 180.02562 * 5 4 3 29 29 H 1.08003 * 119.98549 * 179.97438 * 6 5 4 30 30 H 0.97007 * 120.00206 * 148.24751 * 8 7 6 31 31 H 1.08000 * 119.92083 * 0.02562 * 10 9 8 32 32 H 1.07996 * 120.08205 * 180.27730 * 11 10 9 33 33 H 0.96998 * 119.99743 * 180.02562 * 16 15 13 34 34 H 1.07997 * 120.07702 * 179.97438 * 21 12 11 35 35 H 1.08002 * 119.92000 * 179.97438 * 22 21 12 36 36 H 1.08001 * 120.06938 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2902 2.3754 0.0005 5 6 1.9156 3.6076 0.0011 6 6 3.2948 3.6853 0.0001 7 6 4.0569 2.5230 -0.0008 8 7 5.4506 2.6009 -0.0013 9 6 6.0865 3.6577 -0.6383 10 6 5.4150 4.3775 -1.6282 11 6 6.0313 5.4200 -2.2540 12 6 7.3534 5.7631 -1.9076 13 6 7.9998 6.8370 -2.5556 14 1 8.8501 7.3146 -2.0915 15 6 7.5396 7.2829 -3.7986 16 7 6.9090 6.4591 -4.5970 17 14 7.8245 9.0541 -4.3196 18 1 9.0572 9.1353 -5.1436 19 1 6.6644 9.5284 -5.1160 20 1 7.9784 9.9062 -3.1132 21 6 8.0269 5.0285 -0.9116 22 6 7.3963 3.9924 -0.2897 23 6 3.4296 1.2838 -0.0062 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2117 2.3183 0.0005 28 1 1.3250 4.5118 0.0019 29 1 3.7812 4.6496 0.0001 30 1 5.9750 1.9145 0.4402 31 1 4.4032 4.1109 -1.8955 32 1 5.5091 5.9789 -3.0164 33 1 6.5901 6.7683 -5.4593 34 1 9.0405 5.2858 -0.6415 35 1 7.9115 3.4282 0.4736 36 1 4.0191 0.3789 -0.0114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082715049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:25 Heat of formation + Delta-G solvation = -2.109439 kcal Electronic energy + Delta-G solvation = -19150.730301 eV Core-core repulsion = 16178.099496 eV Total energy + Delta-G solvation = -2972.630805 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.21884 -40.00719 -38.43150 -36.32993 -34.83118 -31.97607 -31.50732 -30.82016 -29.46018 -28.05017 -26.38323 -23.95589 -23.06107 -22.64047 -21.70173 -19.27333 -19.05029 -18.16509 -17.17554 -16.86588 -16.65401 -16.61679 -16.50175 -15.72463 -15.12679 -14.61847 -14.48215 -14.43331 -14.06599 -13.86921 -13.46302 -13.26565 -13.08308 -12.84667 -12.80273 -12.57527 -12.31215 -12.06741 -11.80847 -11.69416 -11.39960 -11.16063 -10.80309 -9.66114 -9.47195 -9.17560 -8.72505 -8.15790 -6.10425 0.41210 0.54204 1.07969 1.14034 1.39718 1.50829 1.59182 2.22202 2.25696 2.67925 2.84220 2.93713 3.77208 3.95354 4.22515 4.32165 4.37212 4.40952 4.44706 4.45428 4.54622 4.64679 4.76926 4.88105 5.00341 5.12853 5.20098 5.32894 5.37098 5.42946 5.55045 5.62725 5.70627 5.83272 5.91654 6.10807 6.30631 6.51046 6.58116 6.76166 6.96553 6.99095 7.13995 8.30923 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031260 B = 0.003955 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.497343 B = 7078.566402 C = 7610.294326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.151 3.849 4 C -0.251 4.251 5 C -0.050 4.050 6 C -0.220 4.220 7 C 0.223 3.777 8 N -0.671 5.671 9 C 0.046 3.954 10 C -0.132 4.132 11 C -0.170 4.170 12 C 0.063 3.937 13 C -0.502 4.502 14 H 0.076 0.924 15 C 0.041 3.959 16 N -0.817 5.817 17 Si 0.974 3.026 18 H -0.262 1.262 19 H -0.266 1.266 20 H -0.259 1.259 21 C -0.219 4.219 22 C -0.123 4.123 23 C -0.227 4.227 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.119 0.881 27 H 0.152 0.848 28 H 0.145 0.855 29 H 0.111 0.889 30 H 0.409 0.591 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.289 0.711 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.572 -7.227 6.803 15.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.105 3.895 4 C -0.271 4.271 5 C -0.068 4.068 6 C -0.242 4.242 7 C 0.122 3.878 8 N -0.294 5.294 9 C -0.049 4.049 10 C -0.153 4.153 11 C -0.190 4.190 12 C 0.060 3.940 13 C -0.530 4.530 14 H 0.094 0.906 15 C -0.175 4.175 16 N -0.442 5.442 17 Si 0.795 3.205 18 H -0.187 1.187 19 H -0.191 1.191 20 H -0.183 1.183 21 C -0.239 4.239 22 C -0.144 4.144 23 C -0.250 4.250 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.137 0.863 27 H 0.169 0.831 28 H 0.163 0.837 29 H 0.129 0.871 30 H 0.245 0.755 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.141 0.859 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.587 -7.364 6.506 15.193 hybrid contribution 0.394 0.593 -0.363 0.799 sum -11.194 -6.771 6.142 14.453 Atomic orbital electron populations 1.23347 0.76350 1.05481 1.02352 1.86019 1.23585 1.26725 1.88587 1.18741 0.91461 0.84810 0.94463 1.21267 1.00895 0.91411 1.13509 1.20968 0.93132 0.98229 0.94497 1.21043 0.94821 0.97431 1.10934 1.17543 0.83592 0.93001 0.93660 1.41487 1.02502 1.26522 1.58874 1.17240 0.93999 0.95226 0.98453 1.20429 0.99456 0.98394 0.97008 1.20752 0.95343 1.00217 1.02660 1.17891 0.91779 0.92142 0.92177 1.19683 1.14830 1.15237 1.03297 0.90605 1.26723 0.92509 1.02909 0.95357 1.69962 1.28876 1.37275 1.08079 0.85323 0.79034 0.77297 0.78862 1.18666 1.19077 1.18272 1.20695 0.99433 0.99701 1.04050 1.20221 0.94157 0.98890 1.01125 1.20001 0.92569 0.96707 1.15715 0.91480 0.91904 0.86256 0.83086 0.83738 0.87143 0.75468 0.87875 0.88510 0.90076 0.87912 0.85936 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.34 -8.23 10.49 -92.49 -0.97 -9.20 16 3 C 0.15 4.24 6.68 22.49 0.15 4.39 16 4 C -0.25 -6.29 9.04 22.40 0.20 -6.09 16 5 C -0.05 -1.38 10.03 22.24 0.22 -1.16 16 6 C -0.22 -7.58 7.54 22.43 0.17 -7.41 16 7 C 0.22 7.73 5.94 38.24 0.23 7.95 16 8 N -0.67 -24.09 5.43 -180.24 -0.98 -25.07 16 9 C 0.05 2.00 6.19 38.70 0.24 2.24 16 10 C -0.13 -6.32 7.69 22.15 0.17 -6.15 16 11 C -0.17 -9.08 8.70 22.48 0.20 -8.88 16 12 C 0.06 3.42 5.60 -21.27 -0.12 3.30 16 13 C -0.50 -27.25 8.99 23.36 0.21 -27.04 16 14 H 0.08 3.98 7.97 -2.91 -0.02 3.95 16 15 C 0.04 2.10 4.95 85.22 0.42 2.52 16 16 N -0.82 -43.15 11.27 21.81 0.25 -42.90 16 17 Si 0.97 38.25 29.63 68.60 2.03 40.28 16 18 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 19 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 21 C -0.22 -10.70 9.74 22.47 0.22 -10.49 16 22 C -0.12 -5.33 9.86 22.15 0.22 -5.11 16 23 C -0.23 -7.07 9.90 22.50 0.22 -6.85 16 24 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 25 H 0.06 0.82 7.66 -2.38 -0.02 0.80 16 26 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.15 2.76 6.29 -2.91 -0.02 2.74 16 28 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 29 H 0.11 4.25 6.40 -2.91 -0.02 4.23 16 30 H 0.41 12.39 8.86 -92.70 -0.82 11.57 16 31 H 0.10 4.73 5.95 -2.91 -0.02 4.71 16 32 H 0.10 5.41 6.21 -2.91 -0.02 5.40 16 33 H 0.29 13.73 8.30 -92.71 -0.77 12.97 16 34 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 35 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -62.11 304.47 4.48 -57.64 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: 0.28 Total: 36.63 kcal Atomic # 6 Polarization: -61.24 SS G_CDS: 3.86 Total: -57.37 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -0.73 Total: -67.97 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.97 Total: -9.20 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -62.11 4.48 -57.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082715049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.527 kcal (2) G-P(sol) polarization free energy of solvation -62.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds