Wall clock time and date at job start Mon Mar 30 2020 01:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99695 * 2 1 4 4 H 1.48491 * 109.47249 * 274.57122 * 3 2 1 5 5 H 1.48497 * 109.46950 * 34.57443 * 3 2 1 6 6 H 1.48504 * 109.46936 * 154.56916 * 3 2 1 7 7 C 1.38807 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00575 * 164.24595 * 7 2 1 9 9 N 1.36941 * 119.99609 * 344.24431 * 7 2 1 10 10 C 1.46987 * 121.33569 * 335.98456 * 9 7 2 11 11 C 1.50347 * 109.19002 * 223.05486 * 10 9 7 12 12 C 1.31271 * 123.41239 * 349.40406 * 11 10 9 13 13 C 1.47596 * 117.81629 * 180.58401 * 12 11 10 14 14 C 1.35787 * 126.74866 * 104.75650 * 13 12 11 15 15 N 1.36541 * 109.70116 * 179.97438 * 14 13 12 16 16 H 0.97000 * 124.82252 * 179.97438 * 15 14 13 17 17 C 1.37541 * 110.35105 * 359.97438 * 15 14 13 18 18 N 1.32708 * 132.96155 * 180.02562 * 17 15 14 19 19 C 1.31583 * 121.68457 * 179.97438 * 18 17 15 20 20 C 1.38617 * 121.55520 * 359.97438 * 19 18 17 21 21 C 1.38290 * 119.35832 * 359.97438 * 20 19 18 22 22 C 1.39456 * 118.05446 * 359.74884 * 21 20 19 23 23 C 1.49990 * 124.35832 * 0.29221 * 12 11 10 24 24 C 1.47306 * 121.33063 * 155.95741 * 9 7 2 25 25 H 0.97002 * 120.00527 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.52424 * 343.14939 * 10 9 7 27 27 H 1.08999 * 109.52577 * 103.34653 * 10 9 7 28 28 H 1.07994 * 118.29184 * 169.16044 * 11 10 9 29 29 H 1.07997 * 125.14906 * 359.92988 * 14 13 12 30 30 H 1.08011 * 119.22609 * 179.97438 * 19 18 17 31 31 H 1.07999 * 120.32380 * 179.97438 * 20 19 18 32 32 H 1.07991 * 120.97454 * 180.02562 * 21 20 19 33 33 H 1.08996 * 109.31588 * 101.56983 * 23 12 11 34 34 H 1.09007 * 109.31374 * 220.98821 * 23 12 11 35 35 H 1.08995 * 109.76539 * 358.09788 * 24 9 7 36 36 H 1.08996 * 109.80821 * 237.35240 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4010 2.1023 -1.3955 5 1 1.4992 2.6228 0.7945 6 1 3.5927 1.4143 0.6012 7 6 2.0103 -1.2021 -0.0005 8 1 3.0599 -1.2195 -0.2545 9 7 1.3642 -2.3659 0.3210 10 6 0.1492 -2.3622 1.1482 11 6 0.2332 -3.4760 2.1546 12 6 1.1479 -4.4168 2.1170 13 6 1.1072 -5.4592 3.1611 14 6 0.6800 -6.7397 3.0145 15 7 0.7935 -7.4018 4.2032 16 1 0.5494 -8.3297 4.3460 17 6 1.3030 -6.5661 5.1695 18 7 1.5911 -6.7378 6.4535 19 6 2.0821 -5.7627 7.1880 20 6 2.3241 -4.5054 6.6568 21 6 2.0443 -4.2674 5.3236 22 6 1.5301 -5.3176 4.5637 23 6 2.2279 -4.5064 1.0800 24 6 1.8587 -3.6715 -0.1488 25 1 -0.4851 0.8400 0.0004 26 1 0.0633 -1.4065 1.6651 27 1 -0.7240 -2.5140 0.5137 28 1 -0.4946 -3.5012 2.9521 29 1 0.3064 -7.1693 2.0967 30 1 2.3019 -5.9463 8.2295 31 1 2.7272 -3.7194 7.2781 32 1 2.2230 -3.2979 4.8827 33 1 3.1628 -4.1357 1.5001 34 1 2.3572 -5.5473 0.7831 35 1 2.7391 -3.5284 -0.7753 36 1 1.0797 -4.1783 -0.7183 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095399419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:07 Heat of formation + Delta-G solvation = 109.638565 kcal Electronic energy + Delta-G solvation = -19696.290763 eV Core-core repulsion = 16760.798466 eV Total energy + Delta-G solvation = -2935.492297 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.37906 -37.91277 -37.17276 -33.78038 -32.41799 -30.92987 -29.75581 -29.61843 -28.40608 -25.27416 -23.59846 -22.73393 -22.42718 -21.80653 -19.71653 -18.29499 -17.50632 -16.58485 -16.05147 -15.43024 -15.06419 -14.82667 -14.61441 -14.07604 -13.62107 -13.44596 -13.16647 -12.86152 -12.68134 -12.32791 -12.10145 -11.95799 -11.49196 -11.39092 -10.93110 -10.70649 -10.43696 -10.34873 -10.12148 -9.80898 -9.63890 -9.31614 -8.61895 -8.39042 -8.04233 -7.57746 -6.70454 -5.76925 -3.15214 1.09487 1.45271 2.64056 2.83315 3.03210 3.39315 3.46519 3.48944 3.99101 4.51742 4.55278 4.87508 4.90099 5.08037 5.29663 5.40951 5.43193 5.52459 5.71609 5.78045 5.81510 5.98772 6.16734 6.22216 6.37272 6.41656 6.48613 6.57808 6.65057 6.84457 6.93407 7.06430 7.27430 7.32154 7.35878 7.48636 7.77971 7.89391 8.06296 8.41420 9.22841 9.85874 10.44227 11.33488 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025968 B = 0.004851 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.974308 B = 5770.123448 C = 6396.298839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.001 4.001 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.198 3.802 11 C -0.135 4.135 12 C -0.082 4.082 13 C -0.105 4.105 14 C 0.052 3.948 15 N -0.582 5.582 16 H 0.416 0.584 17 C 0.280 3.720 18 N -0.506 5.506 19 C 0.131 3.869 20 C -0.209 4.209 21 C -0.019 4.019 22 C -0.139 4.139 23 C -0.084 4.084 24 C 0.144 3.856 25 H 0.253 0.747 26 H 0.092 0.908 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.178 0.822 30 H 0.157 0.843 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 -12.668 9.629 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.073 3.927 11 C -0.155 4.155 12 C -0.083 4.083 13 C -0.112 4.112 14 C -0.073 4.073 15 N -0.188 5.188 16 H 0.253 0.747 17 C 0.047 3.953 18 N -0.220 5.220 19 C -0.034 4.034 20 C -0.231 4.231 21 C -0.045 4.045 22 C -0.146 4.146 23 C -0.124 4.124 24 C 0.017 3.983 25 H 0.063 0.937 26 H 0.110 0.890 27 H 0.056 0.944 28 H 0.109 0.891 29 H 0.195 0.805 30 H 0.174 0.826 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.537 -13.475 9.913 16.799 hybrid contribution 0.373 1.182 -0.139 1.248 sum 1.910 -12.293 9.774 15.821 Atomic orbital electron populations 1.70016 1.05168 1.25415 1.54888 1.24967 0.95349 0.98216 1.01355 0.86272 0.79149 0.83778 0.77566 1.21534 1.21598 1.20487 1.19184 0.92288 0.84427 1.41482 0.91420 1.44118 1.29584 1.01130 1.56998 1.19718 0.88674 0.94685 0.89597 1.23590 0.96496 0.96473 0.98946 1.18684 0.99036 0.94907 0.95645 1.19443 1.05794 0.93988 0.91987 1.21991 1.04218 0.92419 0.88650 1.41367 1.57058 1.12911 1.07433 0.74671 1.18371 0.99205 0.89091 0.88637 1.66457 1.16273 1.35327 1.03943 1.22347 0.94317 0.88167 0.98576 1.21843 1.06218 0.98940 0.96053 1.21073 0.92451 0.98230 0.92747 1.19901 1.05412 0.94332 0.94970 1.20747 0.96576 0.98963 0.96077 1.20951 0.97289 0.87206 0.92808 0.93666 0.88969 0.94387 0.89052 0.80490 0.82616 0.84743 0.84547 0.91972 0.92934 0.92501 0.95856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.17 11.08 55.49 0.62 -25.56 16 2 C 0.00 -0.03 5.00 -17.43 -0.09 -0.12 16 3 Si 0.90 21.64 29.58 -169.99 -5.03 16.61 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.24 -6.68 9.70 -15.06 -0.15 -6.83 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.60 -14.92 3.00 -173.72 -0.52 -15.44 16 10 C 0.20 4.75 5.23 -5.10 -0.03 4.72 16 11 C -0.14 -2.70 9.58 -36.27 -0.35 -3.05 16 12 C -0.08 -1.49 5.71 -102.94 -0.59 -2.08 16 13 C -0.10 -1.68 5.40 -103.33 -0.56 -2.24 16 14 C 0.05 0.67 11.80 -16.33 -0.19 0.48 16 15 N -0.58 -7.12 6.02 -11.88 -0.07 -7.19 16 16 H 0.42 3.74 8.96 -40.82 -0.37 3.38 16 17 C 0.28 4.21 8.41 -155.60 -1.31 2.90 16 18 N -0.51 -7.33 10.39 -12.29 -0.13 -7.46 16 19 C 0.13 1.60 11.14 -17.52 -0.20 1.40 16 20 C -0.21 -2.56 10.10 -39.42 -0.40 -2.96 16 21 C -0.02 -0.28 10.22 -39.11 -0.40 -0.68 16 22 C -0.14 -2.24 6.37 -104.92 -0.67 -2.91 16 23 C -0.08 -1.52 5.95 -28.18 -0.17 -1.69 16 24 C 0.14 3.00 6.56 -3.56 -0.02 2.97 16 25 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.09 2.45 6.40 -51.93 -0.33 2.12 16 27 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.09 1.71 7.94 -52.49 -0.42 1.29 16 29 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.81 8.13 -51.92 -0.42 0.39 16 35 H 0.06 1.15 7.96 -51.93 -0.41 0.73 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 304.84 15.07 4.59 4.59 Total: -1.00 -31.65 304.84 -10.11 -41.75 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -4.46 Total: 2.76 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -5.11 Total: -10.07 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.11 Total: -55.65 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.65 -10.11 -41.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095399419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.392 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds