Wall clock time and date at job start Mon Mar 30 2020 01:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99695 * 2 1 4 4 H 1.48491 * 109.47249 * 274.57122 * 3 2 1 5 5 H 1.48497 * 109.46950 * 34.57443 * 3 2 1 6 6 H 1.48504 * 109.46936 * 154.56916 * 3 2 1 7 7 C 1.38807 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00575 * 164.24595 * 7 2 1 9 9 N 1.36941 * 119.99609 * 344.24431 * 7 2 1 10 10 C 1.46987 * 121.33569 * 335.98456 * 9 7 2 11 11 C 1.50347 * 109.19002 * 223.05486 * 10 9 7 12 12 C 1.31271 * 123.41239 * 349.40406 * 11 10 9 13 13 C 1.47596 * 117.81629 * 180.58401 * 12 11 10 14 14 C 1.35787 * 126.74866 * 104.75650 * 13 12 11 15 15 N 1.36541 * 109.70116 * 179.97438 * 14 13 12 16 16 H 0.97000 * 124.82252 * 179.97438 * 15 14 13 17 17 C 1.37541 * 110.35105 * 359.97438 * 15 14 13 18 18 N 1.32708 * 132.96155 * 180.02562 * 17 15 14 19 19 C 1.31583 * 121.68457 * 179.97438 * 18 17 15 20 20 C 1.38617 * 121.55520 * 359.97438 * 19 18 17 21 21 C 1.38290 * 119.35832 * 359.97438 * 20 19 18 22 22 C 1.39456 * 118.05446 * 359.74884 * 21 20 19 23 23 C 1.49990 * 124.35832 * 0.29221 * 12 11 10 24 24 C 1.47306 * 121.33063 * 155.95741 * 9 7 2 25 25 H 0.97002 * 120.00527 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.52424 * 343.14939 * 10 9 7 27 27 H 1.08999 * 109.52577 * 103.34653 * 10 9 7 28 28 H 1.07994 * 118.29184 * 169.16044 * 11 10 9 29 29 H 1.07997 * 125.14906 * 359.92988 * 14 13 12 30 30 H 1.08011 * 119.22609 * 179.97438 * 19 18 17 31 31 H 1.07999 * 120.32380 * 179.97438 * 20 19 18 32 32 H 1.07991 * 120.97454 * 180.02562 * 21 20 19 33 33 H 1.08996 * 109.31588 * 101.56983 * 23 12 11 34 34 H 1.09007 * 109.31374 * 220.98821 * 23 12 11 35 35 H 1.08995 * 109.76539 * 358.09788 * 24 9 7 36 36 H 1.08996 * 109.80821 * 237.35240 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4010 2.1023 -1.3955 5 1 1.4992 2.6228 0.7945 6 1 3.5927 1.4143 0.6012 7 6 2.0103 -1.2021 -0.0005 8 1 3.0599 -1.2195 -0.2545 9 7 1.3642 -2.3659 0.3210 10 6 0.1492 -2.3622 1.1482 11 6 0.2332 -3.4760 2.1546 12 6 1.1479 -4.4168 2.1170 13 6 1.1072 -5.4592 3.1611 14 6 0.6800 -6.7397 3.0145 15 7 0.7935 -7.4018 4.2032 16 1 0.5494 -8.3297 4.3460 17 6 1.3030 -6.5661 5.1695 18 7 1.5911 -6.7378 6.4535 19 6 2.0821 -5.7627 7.1880 20 6 2.3241 -4.5054 6.6568 21 6 2.0443 -4.2674 5.3236 22 6 1.5301 -5.3176 4.5637 23 6 2.2279 -4.5064 1.0800 24 6 1.8587 -3.6715 -0.1488 25 1 -0.4851 0.8400 0.0004 26 1 0.0633 -1.4065 1.6651 27 1 -0.7240 -2.5140 0.5137 28 1 -0.4946 -3.5012 2.9521 29 1 0.3064 -7.1693 2.0967 30 1 2.3019 -5.9463 8.2295 31 1 2.7272 -3.7194 7.2781 32 1 2.2230 -3.2979 4.8827 33 1 3.1628 -4.1357 1.5001 34 1 2.3572 -5.5473 0.7831 35 1 2.7391 -3.5284 -0.7753 36 1 1.0797 -4.1783 -0.7183 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095399419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:07 Heat of formation + Delta-G solvation = 91.694707 kcal Electronic energy + Delta-G solvation = -19697.068867 eV Core-core repulsion = 16760.798466 eV Total energy + Delta-G solvation = -2936.270401 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.42552 -39.25025 -38.53754 -35.42457 -33.77890 -32.55009 -31.42758 -30.73194 -29.72940 -27.10710 -24.63252 -24.45556 -23.62193 -23.31516 -21.06757 -19.48716 -19.22598 -17.64325 -17.35580 -16.93882 -16.71797 -15.98305 -15.88631 -15.49359 -15.28709 -15.15446 -14.47946 -14.18367 -14.00295 -13.84136 -13.30046 -13.25393 -13.06146 -12.88775 -12.81157 -12.57919 -12.21591 -12.16131 -11.69618 -11.38866 -11.22203 -10.66585 -10.39617 -9.52089 -9.40227 -8.78696 -8.71805 -7.85965 -5.27130 0.04898 0.42735 1.30160 1.47699 1.49255 1.59177 1.73649 1.89578 2.53031 2.95028 3.31134 3.59672 3.66554 3.81158 3.93433 4.11084 4.22475 4.31874 4.39676 4.55555 4.58650 4.70522 4.80330 4.86925 4.95120 4.98715 5.12196 5.24539 5.35286 5.42433 5.47904 5.51981 5.59028 5.63988 5.92503 6.03077 6.23666 6.36215 6.44730 7.06779 7.15743 7.86135 8.40647 9.22773 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025968 B = 0.004851 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.974308 B = 5770.123448 C = 6396.298839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.257 4.257 8 H 0.070 0.930 9 N -0.614 5.614 10 C 0.213 3.787 11 C -0.161 4.161 12 C -0.048 4.048 13 C -0.154 4.154 14 C 0.088 3.912 15 N -0.567 5.567 16 H 0.433 0.567 17 C 0.261 3.739 18 N -0.518 5.518 19 C 0.130 3.870 20 C -0.197 4.197 21 C -0.048 4.048 22 C -0.161 4.161 23 C -0.079 4.079 24 C 0.139 3.861 25 H 0.249 0.751 26 H 0.055 0.945 27 H 0.010 0.990 28 H 0.098 0.902 29 H 0.214 0.786 30 H 0.196 0.804 31 H 0.164 0.836 32 H 0.123 0.877 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 -14.733 10.883 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.088 0.912 9 N -0.338 5.338 10 C 0.087 3.913 11 C -0.180 4.180 12 C -0.049 4.049 13 C -0.161 4.161 14 C -0.039 4.039 15 N -0.174 5.174 16 H 0.274 0.726 17 C 0.028 3.972 18 N -0.232 5.232 19 C -0.035 4.035 20 C -0.218 4.218 21 C -0.075 4.075 22 C -0.168 4.168 23 C -0.117 4.117 24 C 0.014 3.986 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.027 0.973 28 H 0.116 0.884 29 H 0.231 0.769 30 H 0.212 0.788 31 H 0.182 0.818 32 H 0.141 0.859 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.697 -15.593 11.181 19.376 hybrid contribution 0.072 1.714 -0.477 1.781 sum 2.768 -13.879 10.704 17.745 Atomic orbital electron populations 1.70182 1.06574 1.25729 1.56203 1.25726 0.96112 1.01301 1.01677 0.85264 0.78116 0.79702 0.77422 1.21159 1.21944 1.19537 1.19523 0.92622 0.85682 1.40847 0.91218 1.44385 1.29708 1.02140 1.57584 1.19313 0.87608 0.94654 0.89685 1.23176 0.98980 0.96682 0.99183 1.18775 0.96828 0.94099 0.95160 1.19255 1.10122 0.94952 0.91765 1.22431 1.00797 0.91088 0.89602 1.41388 1.55862 1.13510 1.06668 0.72631 1.18576 1.00103 0.89266 0.89230 1.66567 1.16671 1.36168 1.03768 1.23046 0.92904 0.87573 1.00020 1.22188 1.04538 0.99909 0.95132 1.21201 0.94189 0.97849 0.94227 1.20101 1.06181 0.95319 0.95210 1.20696 0.96008 1.00403 0.94629 1.21142 0.97390 0.85808 0.94294 0.94161 0.92686 0.97276 0.88389 0.76906 0.78780 0.81839 0.85854 0.92605 0.89193 0.92116 0.95318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.32 11.08 21.65 0.24 -56.08 16 2 C -0.05 -3.03 5.00 84.86 0.42 -2.60 16 3 Si 0.97 45.41 29.58 68.60 2.03 47.44 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.26 -14.36 9.70 84.03 0.82 -13.55 16 8 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 9 N -0.61 -31.62 3.00 -703.54 -2.11 -33.73 16 10 C 0.21 10.73 5.23 85.43 0.45 11.18 16 11 C -0.16 -6.58 9.58 25.27 0.24 -6.34 16 12 C -0.05 -1.70 5.71 -17.92 -0.10 -1.81 16 13 C -0.15 -4.67 5.40 -19.03 -0.10 -4.77 16 14 C 0.09 1.97 11.80 83.39 0.98 2.95 16 15 N -0.57 -12.13 6.02 -191.51 -1.15 -13.28 16 16 H 0.43 6.26 8.96 -92.71 -0.83 5.43 16 17 C 0.26 7.28 8.41 133.83 1.13 8.41 16 18 N -0.52 -13.71 10.39 -192.79 -2.00 -15.71 16 19 C 0.13 2.79 11.14 84.82 0.95 3.73 16 20 C -0.20 -4.41 10.10 22.37 0.23 -4.18 16 21 C -0.05 -1.41 10.22 22.58 0.23 -1.18 16 22 C -0.16 -5.02 6.37 -20.06 -0.13 -5.15 16 23 C -0.08 -2.72 5.95 29.65 0.18 -2.54 16 24 C 0.14 5.74 6.56 86.25 0.57 6.30 16 25 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 26 H 0.05 3.13 6.40 -2.39 -0.02 3.11 16 27 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.10 3.82 7.94 -2.91 -0.02 3.79 16 29 H 0.21 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.20 2.51 8.06 -2.90 -0.02 2.48 16 31 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.12 3.81 8.06 -2.92 -0.02 3.78 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.09 2.48 8.13 -2.38 -0.02 2.46 16 35 H 0.06 2.41 7.96 -2.39 -0.02 2.39 16 36 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -70.82 304.84 3.12 -67.70 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.27 Total: 13.22 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 5.85 Total: -9.56 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -5.03 Total: -118.81 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -70.82 3.12 -67.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095399419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.392 kcal (2) G-P(sol) polarization free energy of solvation -70.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds