Wall clock time and date at job start Mon Mar 30 2020 00:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.50696 * 109.47380 * 120.00080 * 2 1 3 5 5 H 1.07994 * 120.00467 * 114.48798 * 4 2 1 6 6 C 1.37882 * 120.00039 * 294.49232 * 4 2 1 7 7 N 1.31506 * 120.00289 * 164.52304 * 6 4 2 8 8 Si 1.86807 * 119.99611 * 344.79715 * 6 4 2 9 9 H 1.48500 * 109.47135 * 269.72638 * 8 6 4 10 10 H 1.48504 * 109.46999 * 29.72649 * 8 6 4 11 11 H 1.48497 * 109.47009 * 149.72539 * 8 6 4 12 12 N 1.46503 * 109.46839 * 240.00018 * 2 1 3 13 13 C 1.46497 * 120.00246 * 299.99658 * 12 2 1 14 14 C 1.34777 * 119.99874 * 119.99814 * 12 2 1 15 15 O 1.21283 * 119.99926 * 359.97438 * 14 12 2 16 16 C 1.50695 * 119.99795 * 179.97438 * 14 12 2 17 17 N 1.46505 * 109.46917 * 179.97438 * 16 14 12 18 18 C 1.34761 * 124.18179 * 269.72293 * 17 16 14 19 19 O 1.21237 * 127.15282 * 0.02562 * 18 17 16 20 20 C 1.51575 * 105.68838 * 179.97438 * 18 17 16 21 21 N 1.47308 * 103.59153 * 0.32375 * 20 18 17 22 22 C 1.33794 * 124.17266 * 90.03145 * 17 16 14 23 23 O 1.21531 * 123.77421 * 359.95643 * 22 17 16 24 24 H 1.08998 * 109.47107 * 293.76516 * 1 2 3 25 25 H 1.08996 * 109.47394 * 53.77285 * 1 2 3 26 26 H 1.09007 * 109.46851 * 173.77444 * 1 2 3 27 27 H 0.97005 * 120.00073 * 355.18266 * 7 6 4 28 28 H 1.09005 * 109.47467 * 89.99947 * 13 12 2 29 29 H 1.08995 * 109.47707 * 210.00376 * 13 12 2 30 30 H 1.09011 * 109.46948 * 330.00192 * 13 12 2 31 31 H 1.09002 * 109.47437 * 299.99777 * 16 14 12 32 32 H 1.09005 * 109.47187 * 60.00390 * 16 14 12 33 33 H 1.09002 * 110.76993 * 241.71617 * 20 18 17 34 34 H 1.08999 * 110.56602 * 118.83353 * 20 18 17 35 35 H 0.97006 * 126.69243 * 179.76897 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5779 -1.6374 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9532 -0.9202 3.5528 8 14 1.2432 1.5998 2.6468 9 1 2.4336 2.4781 2.7770 10 1 0.4676 1.9925 1.4428 11 1 0.3894 1.7412 3.8535 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0834 15 8 3.0857 1.1257 -1.8917 16 6 3.2958 -0.7462 -3.3136 17 7 4.1091 0.1749 -4.1114 18 6 3.6197 0.9680 -5.0849 19 8 2.4671 1.0510 -5.4514 20 6 4.8099 1.7354 -5.6253 21 7 5.9388 1.2332 -4.8232 22 6 5.4304 0.3282 -3.9676 23 8 6.0970 -0.2829 -3.1557 24 1 -0.3633 0.4141 0.9405 25 1 -0.3634 0.6073 -0.8290 26 1 -0.3633 -1.0217 -0.1115 27 1 2.1679 -1.8620 3.4633 28 1 0.7375 -2.1445 -1.9993 29 1 2.4628 -2.5819 -1.9864 30 1 1.5296 -2.5969 -0.4707 31 1 3.9016 -1.6023 -3.0166 32 1 2.4482 -1.0891 -3.9070 33 1 4.6794 2.8071 -5.4749 34 1 4.9611 1.5133 -6.6816 35 1 6.8677 1.5027 -4.8975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103443512.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:08 Heat of formation + Delta-G solvation = -62.855535 kcal Electronic energy + Delta-G solvation = -21264.767695 eV Core-core repulsion = 17878.653479 eV Total energy + Delta-G solvation = -3386.114217 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.39455 -39.19316 -38.60823 -36.13899 -35.68231 -34.57835 -32.87074 -30.59336 -28.46198 -27.48276 -26.27654 -24.74847 -22.99618 -22.01295 -20.31173 -18.61305 -18.09327 -17.61629 -17.35712 -16.80263 -16.26765 -15.74119 -15.37263 -15.04759 -14.93083 -14.22879 -14.12408 -13.75422 -13.48127 -13.05639 -12.90542 -12.66745 -12.10514 -11.93513 -11.79499 -11.51549 -11.26462 -11.05456 -10.55462 -10.36829 -10.34004 -10.06669 -9.67383 -9.62904 -9.07921 -9.02161 -8.38222 -7.85342 -6.48629 -4.14569 1.55718 2.02303 2.92395 3.02020 3.10233 3.42234 3.47296 3.59575 3.74607 3.88993 4.47477 4.62095 4.77554 4.87187 4.98446 5.14788 5.22838 5.34061 5.51362 5.60564 5.86596 6.23310 6.33115 6.41179 6.57489 6.60814 6.91492 6.94357 7.10282 7.26172 7.38019 7.81186 8.03312 8.21189 8.33043 8.67120 8.88146 9.53189 10.88093 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026602 B = 0.005421 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.307156 B = 5163.908576 C = 5253.112366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.234 3.766 3 H 0.056 0.944 4 C -0.610 4.610 5 H 0.062 0.938 6 C 0.039 3.961 7 N -0.901 5.901 8 Si 1.038 2.962 9 H -0.284 1.284 10 H -0.270 1.270 11 H -0.284 1.284 12 N -0.582 5.582 13 C 0.079 3.921 14 C 0.494 3.506 15 O -0.545 6.545 16 C 0.101 3.899 17 N -0.559 5.559 18 C 0.526 3.474 19 O -0.470 6.470 20 C 0.067 3.933 21 N -0.730 5.730 22 C 0.707 3.293 23 O -0.536 6.536 24 H 0.060 0.940 25 H 0.026 0.974 26 H 0.047 0.953 27 H 0.269 0.731 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 1.459 -19.999 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.133 3.867 3 H 0.074 0.926 4 C -0.648 4.648 5 H 0.081 0.919 6 C -0.167 4.167 7 N -0.535 5.535 8 Si 0.866 3.134 9 H -0.210 1.210 10 H -0.196 1.196 11 H -0.210 1.210 12 N -0.313 5.313 13 C -0.065 4.065 14 C 0.279 3.721 15 O -0.424 6.424 16 C -0.024 4.024 17 N -0.305 5.305 18 C 0.313 3.687 19 O -0.340 6.340 20 C -0.061 4.061 21 N -0.395 5.395 22 C 0.407 3.593 23 O -0.408 6.408 24 H 0.079 0.921 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 3.071 2.875 -18.460 18.934 hybrid contribution 0.775 -1.228 -1.053 1.794 sum 3.846 1.647 -19.513 19.957 Atomic orbital electron populations 1.22436 0.98519 1.00147 1.00049 1.19284 0.90427 0.94800 0.82220 0.92639 1.22170 1.40578 1.11227 0.90865 0.91941 1.25661 0.94109 1.05261 0.91715 1.70815 1.43751 1.08235 1.30671 0.84185 0.77489 0.75689 0.76038 1.21035 1.19560 1.21010 1.47926 1.48722 1.11803 1.22829 1.21712 0.99039 0.82697 1.03040 1.20448 0.79717 0.87502 0.84474 1.90655 1.58155 1.16966 1.76594 1.21592 0.96525 0.92068 0.92259 1.45833 1.09211 1.40495 1.34911 1.20857 0.89865 0.79106 0.78887 1.90816 1.18073 1.63885 1.61182 1.22413 0.84148 1.01415 0.98108 1.45330 1.10948 1.44141 1.39115 1.15772 0.81402 0.80748 0.81376 1.91040 1.61800 1.50593 1.37384 0.92079 0.95461 0.93409 0.92122 0.93273 0.92532 0.89515 0.85926 0.86201 0.85857 0.86008 0.71511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.57 37.16 0.32 -3.04 16 2 C 0.23 5.78 2.19 -69.08 -0.15 5.63 16 3 H 0.06 1.51 5.53 -51.93 -0.29 1.23 16 4 C -0.61 -17.01 8.37 -34.44 -0.29 -17.30 16 5 H 0.06 1.85 7.38 -52.49 -0.39 1.46 16 6 C 0.04 1.11 5.33 -17.82 -0.09 1.01 16 7 N -0.90 -27.44 13.70 55.43 0.76 -26.68 16 8 Si 1.04 25.74 26.17 -169.99 -4.45 21.29 16 9 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.27 -6.22 5.53 56.52 0.31 -5.91 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 N -0.58 -12.26 2.75 -175.26 -0.48 -12.74 16 13 C 0.08 1.28 9.11 59.85 0.55 1.82 16 14 C 0.49 10.22 7.74 -10.99 -0.09 10.14 16 15 O -0.55 -13.36 15.76 5.55 0.09 -13.28 16 16 C 0.10 1.53 4.73 -5.19 -0.02 1.50 16 17 N -0.56 -8.16 2.09 -122.02 -0.26 -8.41 16 18 C 0.53 6.69 8.31 -10.56 -0.09 6.60 16 19 O -0.47 -7.18 17.75 5.59 0.10 -7.08 16 20 C 0.07 0.49 7.97 -4.32 -0.03 0.46 16 21 N -0.73 -6.74 6.58 -65.74 -0.43 -7.17 16 22 C 0.71 10.35 8.62 -88.02 -0.76 9.59 16 23 O -0.54 -9.99 17.48 5.34 0.09 -9.90 16 24 H 0.06 1.37 5.06 -51.93 -0.26 1.11 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.96 7.47 -51.93 -0.39 0.58 16 27 H 0.27 8.09 8.73 -40.82 -0.36 7.74 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 30 H 0.09 1.56 6.92 -51.92 -0.36 1.20 16 31 H 0.12 1.69 7.12 -51.93 -0.37 1.32 16 32 H 0.12 1.48 7.96 -51.93 -0.41 1.06 16 33 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.44 2.79 8.96 -40.82 -0.37 2.42 16 LS Contribution 297.13 15.07 4.48 4.48 Total: -1.00 -38.07 297.13 -4.86 -42.93 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.10 Total: 0.16 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: -0.66 Total: 16.41 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.41 Total: -55.01 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: 0.28 Total: -30.26 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -4.45 Total: 21.29 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -38.07 -4.86 -42.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443512.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.927 kcal (2) G-P(sol) polarization free energy of solvation -38.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds