Wall clock time and date at job start Mon Mar 30 2020 00:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.50696 * 109.47380 * 120.00080 * 2 1 3 5 5 H 1.07994 * 120.00467 * 114.48798 * 4 2 1 6 6 C 1.37882 * 120.00039 * 294.49232 * 4 2 1 7 7 N 1.31506 * 120.00289 * 164.52304 * 6 4 2 8 8 Si 1.86807 * 119.99611 * 344.79715 * 6 4 2 9 9 H 1.48500 * 109.47135 * 269.72638 * 8 6 4 10 10 H 1.48504 * 109.46999 * 29.72649 * 8 6 4 11 11 H 1.48497 * 109.47009 * 149.72539 * 8 6 4 12 12 N 1.46503 * 109.46839 * 240.00018 * 2 1 3 13 13 C 1.46497 * 120.00246 * 299.99658 * 12 2 1 14 14 C 1.34777 * 119.99874 * 119.99814 * 12 2 1 15 15 O 1.21283 * 119.99926 * 359.97438 * 14 12 2 16 16 C 1.50695 * 119.99795 * 179.97438 * 14 12 2 17 17 N 1.46505 * 109.46917 * 179.97438 * 16 14 12 18 18 C 1.34761 * 124.18179 * 269.72293 * 17 16 14 19 19 O 1.21237 * 127.15282 * 0.02562 * 18 17 16 20 20 C 1.51575 * 105.68838 * 179.97438 * 18 17 16 21 21 N 1.47308 * 103.59153 * 0.32375 * 20 18 17 22 22 C 1.33794 * 124.17266 * 90.03145 * 17 16 14 23 23 O 1.21531 * 123.77421 * 359.95643 * 22 17 16 24 24 H 1.08998 * 109.47107 * 293.76516 * 1 2 3 25 25 H 1.08996 * 109.47394 * 53.77285 * 1 2 3 26 26 H 1.09007 * 109.46851 * 173.77444 * 1 2 3 27 27 H 0.97005 * 120.00073 * 355.18266 * 7 6 4 28 28 H 1.09005 * 109.47467 * 89.99947 * 13 12 2 29 29 H 1.08995 * 109.47707 * 210.00376 * 13 12 2 30 30 H 1.09011 * 109.46948 * 330.00192 * 13 12 2 31 31 H 1.09002 * 109.47437 * 299.99777 * 16 14 12 32 32 H 1.09005 * 109.47187 * 60.00390 * 16 14 12 33 33 H 1.09002 * 110.76993 * 241.71617 * 20 18 17 34 34 H 1.08999 * 110.56602 * 118.83353 * 20 18 17 35 35 H 0.97006 * 126.69243 * 179.76897 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5779 -1.6374 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9532 -0.9202 3.5528 8 14 1.2432 1.5998 2.6468 9 1 2.4336 2.4781 2.7770 10 1 0.4676 1.9925 1.4428 11 1 0.3894 1.7412 3.8535 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0834 15 8 3.0857 1.1257 -1.8917 16 6 3.2958 -0.7462 -3.3136 17 7 4.1091 0.1749 -4.1114 18 6 3.6197 0.9680 -5.0849 19 8 2.4671 1.0510 -5.4514 20 6 4.8099 1.7354 -5.6253 21 7 5.9388 1.2332 -4.8232 22 6 5.4304 0.3282 -3.9676 23 8 6.0970 -0.2829 -3.1557 24 1 -0.3633 0.4141 0.9405 25 1 -0.3634 0.6073 -0.8290 26 1 -0.3633 -1.0217 -0.1115 27 1 2.1679 -1.8620 3.4633 28 1 0.7375 -2.1445 -1.9993 29 1 2.4628 -2.5819 -1.9864 30 1 1.5296 -2.5969 -0.4707 31 1 3.9016 -1.6023 -3.0166 32 1 2.4482 -1.0891 -3.9070 33 1 4.6794 2.8071 -5.4749 34 1 4.9611 1.5133 -6.6816 35 1 6.8677 1.5027 -4.8975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103443512.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:08 Heat of formation + Delta-G solvation = -94.522971 kcal Electronic energy + Delta-G solvation = -21266.140899 eV Core-core repulsion = 17878.653479 eV Total energy + Delta-G solvation = -3387.487420 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.40509 -40.79113 -39.68588 -37.40616 -37.22362 -35.69886 -34.88839 -32.41890 -29.62623 -28.40368 -27.72868 -26.80934 -24.01955 -23.50138 -21.66153 -20.20527 -19.60643 -19.10422 -18.70542 -17.90518 -17.60994 -17.01195 -16.57768 -16.42883 -16.27716 -15.55167 -15.30773 -15.05182 -14.86763 -14.72864 -14.28778 -14.11590 -13.81588 -13.48767 -13.43623 -13.14371 -13.02748 -12.49790 -12.20063 -12.02928 -11.62469 -11.51191 -11.39786 -11.16605 -10.65623 -10.58394 -10.40423 -9.60137 -8.74815 -6.43394 0.59919 1.01370 1.42242 1.45691 1.52813 1.65535 1.82996 2.24745 2.33116 2.40870 2.99899 3.02467 3.47446 3.70978 4.02133 4.21549 4.29042 4.31984 4.36179 4.48105 4.58462 4.64581 4.67560 4.75737 4.92036 5.09088 5.31885 5.60841 5.76187 5.80252 5.98403 6.00211 6.32303 6.49854 6.58233 7.05096 7.12538 7.32558 8.58439 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026602 B = 0.005421 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.307156 B = 5163.908576 C = 5253.112366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.233 3.767 3 H 0.029 0.971 4 C -0.605 4.605 5 H 0.033 0.967 6 C -0.008 4.008 7 N -0.931 5.931 8 Si 1.073 2.927 9 H -0.287 1.287 10 H -0.244 1.244 11 H -0.274 1.274 12 N -0.592 5.592 13 C 0.074 3.926 14 C 0.482 3.518 15 O -0.592 6.592 16 C 0.108 3.892 17 N -0.569 5.569 18 C 0.516 3.484 19 O -0.500 6.500 20 C 0.079 3.921 21 N -0.706 5.706 22 C 0.696 3.304 23 O -0.588 6.588 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.257 0.743 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.173 0.827 35 H 0.455 0.545 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.300 2.327 -22.970 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.129 3.871 3 H 0.047 0.953 4 C -0.643 4.643 5 H 0.052 0.948 6 C -0.208 4.208 7 N -0.567 5.567 8 Si 0.895 3.105 9 H -0.214 1.214 10 H -0.168 1.168 11 H -0.200 1.200 12 N -0.323 5.323 13 C -0.068 4.068 14 C 0.270 3.730 15 O -0.474 6.474 16 C -0.017 4.017 17 N -0.314 5.314 18 C 0.306 3.694 19 O -0.372 6.372 20 C -0.047 4.047 21 N -0.372 5.372 22 C 0.397 3.603 23 O -0.465 6.465 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.153 0.847 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.190 0.810 35 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 2.727 3.739 -21.506 21.998 hybrid contribution 0.942 -1.541 -0.203 1.818 sum 3.670 2.197 -21.709 22.126 Atomic orbital electron populations 1.22277 0.96055 1.01542 1.00466 1.19011 0.92216 0.93251 0.82573 0.95345 1.22324 1.39411 1.10038 0.92571 0.94831 1.26850 0.94075 1.08167 0.91735 1.70918 1.46306 1.07850 1.31589 0.83759 0.77598 0.71698 0.77463 1.21375 1.16787 1.19970 1.48003 1.48845 1.13551 1.21870 1.21961 1.02001 0.80030 1.02774 1.21417 0.78658 0.87257 0.85695 1.90612 1.59640 1.19184 1.77960 1.21579 0.97909 0.91825 0.90418 1.46027 1.09353 1.40897 1.35160 1.21743 0.90837 0.78697 0.78118 1.90800 1.19658 1.64706 1.62011 1.22733 0.80504 1.01661 0.99775 1.45299 1.12220 1.42069 1.37573 1.16060 0.81315 0.81317 0.81636 1.91001 1.62803 1.52887 1.39811 0.92747 0.93570 0.91891 0.93370 0.89956 0.89117 0.91874 0.84688 0.82967 0.83199 0.80979 0.69730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.15 8.57 71.98 0.62 -5.53 16 2 C 0.23 11.47 2.19 44.24 0.10 11.57 16 3 H 0.03 1.57 5.53 -2.39 -0.01 1.55 16 4 C -0.61 -34.50 8.37 25.60 0.21 -34.28 16 5 H 0.03 2.06 7.38 -2.91 -0.02 2.04 16 6 C -0.01 -0.49 5.33 84.66 0.45 -0.04 16 7 N -0.93 -58.20 13.70 21.45 0.29 -57.91 16 8 Si 1.07 52.21 26.17 68.60 1.80 54.01 16 9 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 10 H -0.24 -10.75 5.53 99.48 0.55 -10.20 16 11 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 12 N -0.59 -24.58 2.75 -826.79 -2.28 -26.85 16 13 C 0.07 2.29 9.11 127.77 1.16 3.45 16 14 C 0.48 19.70 7.74 87.66 0.68 20.38 16 15 O -0.59 -29.23 15.76 -3.04 -0.05 -29.28 16 16 C 0.11 3.09 4.73 85.63 0.41 3.50 16 17 N -0.57 -15.61 2.09 -777.22 -1.63 -17.24 16 18 C 0.52 11.77 8.31 87.94 0.73 12.50 16 19 O -0.50 -14.16 17.75 -2.90 -0.05 -14.21 16 20 C 0.08 0.83 7.97 85.76 0.68 1.51 16 21 N -0.71 -10.92 6.58 -480.33 -3.16 -14.08 16 22 C 0.70 19.43 8.62 179.44 1.55 20.97 16 23 O -0.59 -21.95 17.48 -3.81 -0.07 -22.01 16 24 H 0.05 2.35 5.06 -2.39 -0.01 2.34 16 25 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.06 2.43 7.47 -2.38 -0.02 2.42 16 27 H 0.26 16.12 8.73 -92.70 -0.81 15.31 16 28 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.09 2.14 6.44 -2.39 -0.02 2.12 16 30 H 0.06 2.25 6.92 -2.38 -0.02 2.23 16 31 H 0.14 3.51 7.12 -2.39 -0.02 3.49 16 32 H 0.15 3.30 7.96 -2.38 -0.02 3.29 16 33 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.17 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.46 4.35 8.96 -92.70 -0.83 3.52 16 Total: -1.00 -87.51 297.13 1.56 -85.95 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.11 Total: 7.60 kcal Atomic # 6 Polarization: 27.44 SS G_CDS: 6.59 Total: 34.03 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -6.77 Total: -116.08 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -0.17 Total: -65.50 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 1.80 Total: 54.01 kcal Total: -87.51 1.56 -85.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443512.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.573 kcal (2) G-P(sol) polarization free energy of solvation -87.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds