Wall clock time and date at job start Mon Mar 30 2020 00:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 N 1.46496 * 109.47455 * 179.97438 * 16 14 12 18 18 C 1.34772 * 124.17608 * 269.72824 * 17 16 14 19 19 O 1.21228 * 127.15796 * 359.97438 * 18 17 16 20 20 C 1.51586 * 105.68555 * 179.97438 * 18 17 16 21 21 N 1.47317 * 103.59369 * 0.31510 * 20 18 17 22 22 C 1.33796 * 124.18093 * 90.01385 * 17 16 14 23 23 O 1.21538 * 123.76877 * 359.97379 * 22 17 16 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 29 29 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 30 30 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 31 31 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 32 32 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 33 33 H 1.08999 * 110.76124 * 241.71217 * 20 18 17 34 34 H 1.09000 * 110.56722 * 118.82668 * 20 18 17 35 35 H 0.96998 * 126.69552 * 179.77251 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 7 4.1101 0.1747 4.1108 18 6 5.4419 0.3248 3.9685 19 8 6.1647 -0.2548 3.1867 20 6 5.8480 1.3692 4.9894 21 7 4.5801 1.7134 5.6558 22 6 3.6244 0.9665 5.0739 23 8 2.4513 1.0050 5.3890 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7088 1.1611 -3.4845 28 1 2.4158 -2.7376 0.9718 29 1 1.6238 -2.2851 2.5003 30 1 0.6905 -2.3002 0.9847 31 1 2.4483 -1.0888 3.9070 32 1 3.9016 -1.6021 3.0167 33 1 6.2732 2.2446 4.4985 34 1 6.5558 0.9504 5.7048 35 1 4.4579 2.3540 6.3738 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103443514.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:10 Heat of formation + Delta-G solvation = -63.630652 kcal Electronic energy + Delta-G solvation = -21180.314871 eV Core-core repulsion = 17794.167042 eV Total energy + Delta-G solvation = -3386.147828 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.32388 -39.02017 -38.53391 -36.08332 -35.50162 -34.48686 -32.87170 -29.97352 -28.23834 -27.34733 -26.13696 -25.19213 -22.92741 -21.97569 -20.35002 -18.58694 -18.01856 -17.36823 -16.74602 -16.48403 -16.14218 -15.56186 -15.28772 -15.01064 -14.71992 -14.23830 -14.16684 -13.96905 -13.44985 -12.87451 -12.73825 -12.58905 -11.93938 -11.55837 -11.53879 -11.06812 -10.99777 -10.81192 -10.70181 -10.30314 -10.28659 -10.18430 -10.15539 -9.63175 -9.17795 -8.89753 -8.41798 -7.64341 -6.06206 -4.14424 1.63990 2.09575 2.98469 3.08277 3.23906 3.29610 3.34356 3.37207 3.87349 3.98025 4.40857 4.69115 4.84378 5.00733 5.06991 5.23232 5.25616 5.42217 5.58491 5.68611 6.03259 6.27060 6.64332 6.76788 6.82804 7.00440 7.05218 7.33494 7.39948 7.49643 7.71205 8.00639 8.08222 8.18583 8.46726 8.79990 8.96726 9.51763 10.99134 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028295 B = 0.005123 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.326737 B = 5464.104028 C = 5813.974339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.276 1.276 12 N -0.587 5.587 13 C 0.082 3.918 14 C 0.492 3.508 15 O -0.544 6.544 16 C 0.099 3.901 17 N -0.559 5.559 18 C 0.524 3.476 19 O -0.466 6.466 20 C 0.067 3.933 21 N -0.730 5.730 22 C 0.708 3.292 23 O -0.541 6.541 24 H 0.094 0.906 25 H 0.031 0.969 26 H 0.012 0.988 27 H 0.264 0.736 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.067 -2.759 16.113 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.728 3.272 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.319 5.319 13 C -0.062 4.062 14 C 0.277 3.723 15 O -0.422 6.422 16 C -0.026 4.026 17 N -0.304 5.304 18 C 0.311 3.689 19 O -0.335 6.335 20 C -0.061 4.061 21 N -0.395 5.395 22 C 0.409 3.591 23 O -0.414 6.414 24 H 0.113 0.887 25 H 0.050 0.950 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 6.836 -2.408 15.497 17.109 hybrid contribution 0.239 -0.250 -0.666 0.751 sum 7.075 -2.659 14.831 16.646 Atomic orbital electron populations 1.22094 0.98041 0.99441 1.00970 1.18975 0.90966 0.94496 0.79697 0.91937 1.21271 1.31921 1.13052 0.90228 0.92258 1.24899 0.94923 0.94982 0.98985 1.69875 1.36279 1.22597 1.23879 0.86530 0.79256 0.79549 0.81898 1.21175 1.20236 1.20199 1.48209 1.48505 1.11781 1.23414 1.21643 1.02187 0.83014 0.99362 1.20403 0.79940 0.87528 0.84430 1.90664 1.58231 1.16847 1.76505 1.21623 0.96839 0.91667 0.92435 1.45830 1.10213 1.39901 1.34490 1.20847 0.81735 0.82630 0.83638 1.90832 1.57055 1.48715 1.36866 1.22425 0.88638 0.99460 0.95585 1.45327 1.07370 1.45741 1.41095 1.15758 0.85209 0.78981 0.79170 1.91011 1.14458 1.69113 1.66829 0.88729 0.95000 0.96862 0.92619 0.92844 0.92927 0.90389 0.86153 0.86226 0.85854 0.86044 0.71593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.95 37.16 0.33 -3.24 16 2 C 0.26 6.74 2.64 -69.09 -0.18 6.56 16 3 H 0.06 1.90 6.90 -51.92 -0.36 1.54 16 4 C -0.53 -14.40 8.37 -34.44 -0.29 -14.69 16 5 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.44 11.32 55.43 0.63 -24.82 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 N -0.59 -12.73 2.75 -175.27 -0.48 -13.21 16 13 C 0.08 1.34 9.48 59.85 0.57 1.91 16 14 C 0.49 10.52 7.74 -10.98 -0.09 10.43 16 15 O -0.54 -13.89 15.76 5.56 0.09 -13.80 16 16 C 0.10 1.55 4.73 -5.20 -0.02 1.53 16 17 N -0.56 -8.41 2.09 -122.02 -0.26 -8.66 16 18 C 0.52 7.13 8.31 -10.55 -0.09 7.04 16 19 O -0.47 -7.73 17.75 5.60 0.10 -7.63 16 20 C 0.07 0.53 7.97 -4.31 -0.03 0.50 16 21 N -0.73 -6.87 6.58 -65.73 -0.43 -7.30 16 22 C 0.71 10.36 8.62 -88.01 -0.76 9.61 16 23 O -0.54 -9.79 17.48 5.33 0.09 -9.70 16 24 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 25 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.65 6.44 -51.93 -0.33 0.32 16 30 H 0.08 1.29 6.43 -51.93 -0.33 0.96 16 31 H 0.12 1.62 7.12 -51.93 -0.37 1.25 16 32 H 0.12 1.60 7.96 -51.93 -0.41 1.19 16 33 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.44 2.80 8.96 -40.82 -0.37 2.44 16 LS Contribution 301.80 15.07 4.55 4.55 Total: -1.00 -36.92 301.80 -5.45 -42.38 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.06 Total: 0.61 kcal Atomic # 6 Polarization: 21.97 SS G_CDS: -0.66 Total: 21.32 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.54 Total: -53.99 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: 0.28 Total: -31.13 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -36.92 -5.45 -42.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443514.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.251 kcal (2) G-P(sol) polarization free energy of solvation -36.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds