Wall clock time and date at job start Mon Mar 30 2020 00:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 N 1.46496 * 109.47455 * 179.97438 * 16 14 12 18 18 C 1.34772 * 124.17608 * 269.72824 * 17 16 14 19 19 O 1.21228 * 127.15796 * 359.97438 * 18 17 16 20 20 C 1.51586 * 105.68555 * 179.97438 * 18 17 16 21 21 N 1.47317 * 103.59369 * 0.31510 * 20 18 17 22 22 C 1.33796 * 124.18093 * 90.01385 * 17 16 14 23 23 O 1.21538 * 123.76877 * 359.97379 * 22 17 16 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 29 29 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 30 30 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 31 31 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 32 32 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 33 33 H 1.08999 * 110.76124 * 241.71217 * 20 18 17 34 34 H 1.09000 * 110.56722 * 118.82668 * 20 18 17 35 35 H 0.96998 * 126.69552 * 179.77251 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 7 4.1101 0.1747 4.1108 18 6 5.4419 0.3248 3.9685 19 8 6.1647 -0.2548 3.1867 20 6 5.8480 1.3692 4.9894 21 7 4.5801 1.7134 5.6558 22 6 3.6244 0.9665 5.0739 23 8 2.4513 1.0050 5.3890 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7088 1.1611 -3.4845 28 1 2.4158 -2.7376 0.9718 29 1 1.6238 -2.2851 2.5003 30 1 0.6905 -2.3002 0.9847 31 1 2.4483 -1.0888 3.9070 32 1 3.9016 -1.6021 3.0167 33 1 6.2732 2.2446 4.4985 34 1 6.5558 0.9504 5.7048 35 1 4.4579 2.3540 6.3738 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103443514.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:10 Heat of formation + Delta-G solvation = -93.262183 kcal Electronic energy + Delta-G solvation = -21181.599790 eV Core-core repulsion = 17794.167042 eV Total energy + Delta-G solvation = -3387.432748 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.37554 -40.67802 -39.66870 -37.28703 -37.18663 -35.66295 -34.81938 -31.79735 -29.47823 -28.36036 -27.64039 -27.28838 -24.00154 -23.53687 -21.72669 -20.14453 -19.08076 -18.75381 -18.35712 -17.86908 -17.55777 -17.03765 -16.59741 -16.35105 -16.24525 -15.86762 -15.28631 -14.98837 -14.81099 -14.43807 -14.20346 -14.04757 -13.50113 -13.35146 -13.04590 -12.94251 -12.72307 -12.65146 -12.20255 -12.17034 -12.13592 -11.59224 -11.37877 -11.21606 -10.62939 -10.51500 -10.35500 -9.41146 -8.16265 -6.33379 0.61726 1.05315 1.40747 1.43634 1.50830 1.62734 1.86672 2.26921 2.34014 2.48959 3.03931 3.11588 3.56162 3.75015 4.06721 4.25756 4.32359 4.32551 4.44763 4.65040 4.67636 4.77328 4.85861 5.00846 5.04544 5.42024 5.55914 5.62943 5.82319 5.98405 6.01035 6.12591 6.34961 6.70464 6.73607 7.08302 7.21601 7.40277 8.88163 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028295 B = 0.005123 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.326737 B = 5464.104028 C = 5813.974339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.262 3.738 3 H 0.005 0.995 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.967 3.033 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.260 1.260 12 N -0.595 5.595 13 C 0.075 3.925 14 C 0.479 3.521 15 O -0.599 6.599 16 C 0.109 3.891 17 N -0.570 5.570 18 C 0.512 3.488 19 O -0.504 6.504 20 C 0.080 3.920 21 N -0.706 5.706 22 C 0.699 3.301 23 O -0.585 6.585 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.017 0.983 27 H 0.265 0.735 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.174 0.826 35 H 0.456 0.544 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.341 -4.230 17.478 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.160 3.840 3 H 0.023 0.977 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.208 1.208 10 H -0.204 1.204 11 H -0.185 1.185 12 N -0.326 5.326 13 C -0.066 4.066 14 C 0.266 3.734 15 O -0.481 6.481 16 C -0.017 4.017 17 N -0.315 5.315 18 C 0.302 3.698 19 O -0.375 6.375 20 C -0.046 4.046 21 N -0.371 5.371 22 C 0.399 3.601 23 O -0.462 6.462 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.191 0.809 35 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 8.138 -3.893 16.920 19.174 hybrid contribution -0.124 0.254 -1.059 1.096 sum 8.014 -3.640 15.861 18.139 Atomic orbital electron populations 1.21875 0.96948 1.00353 0.99874 1.18559 0.91753 0.92086 0.81651 0.97718 1.21530 1.32049 1.13161 0.91028 0.91987 1.25771 0.95015 0.95642 1.02122 1.70026 1.37244 1.23916 1.24539 0.85473 0.78296 0.79070 0.77953 1.20848 1.20421 1.18450 1.48222 1.48464 1.13727 1.22186 1.21955 1.02209 0.79885 1.02596 1.21458 0.79029 0.87186 0.85701 1.90621 1.60079 1.19406 1.77970 1.21596 0.98335 0.91634 0.90089 1.46038 1.10960 1.40052 1.34404 1.21808 0.80946 0.83016 0.83983 1.90810 1.57603 1.50422 1.38707 1.22709 0.88226 0.98619 0.95058 1.45280 1.06842 1.44483 1.40525 1.16007 0.85342 0.79434 0.79298 1.90976 1.16391 1.70585 1.68207 0.91318 0.92916 0.96394 0.92602 0.91852 0.88361 0.90610 0.83707 0.83750 0.83464 0.80925 0.69666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 8.95 71.98 0.64 -5.92 16 2 C 0.26 14.08 2.64 44.24 0.12 14.20 16 3 H 0.00 0.31 6.90 -2.38 -0.02 0.30 16 4 C -0.54 -29.95 8.37 25.60 0.21 -29.74 16 5 H 0.06 3.32 7.65 -2.91 -0.02 3.30 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -54.03 11.32 21.45 0.24 -53.78 16 8 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 12 N -0.60 -25.91 2.75 -826.81 -2.28 -28.19 16 13 C 0.08 2.33 9.48 127.77 1.21 3.54 16 14 C 0.48 20.71 7.74 87.66 0.68 21.39 16 15 O -0.60 -31.86 15.76 -3.03 -0.05 -31.91 16 16 C 0.11 3.25 4.73 85.63 0.41 3.65 16 17 N -0.57 -16.42 2.09 -777.20 -1.63 -18.04 16 18 C 0.51 13.05 8.31 87.94 0.73 13.78 16 19 O -0.50 -16.24 17.75 -2.87 -0.05 -16.29 16 20 C 0.08 0.98 7.97 85.76 0.68 1.66 16 21 N -0.71 -11.31 6.58 -480.28 -3.16 -14.47 16 22 C 0.70 19.52 8.62 179.44 1.55 21.07 16 23 O -0.58 -20.91 17.48 -3.84 -0.07 -20.98 16 24 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 25 H 0.05 2.34 6.66 -2.39 -0.02 2.32 16 26 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.10 2.12 6.44 -2.38 -0.02 2.10 16 30 H 0.08 2.37 6.43 -2.39 -0.02 2.36 16 31 H 0.15 3.57 7.12 -2.38 -0.02 3.56 16 32 H 0.14 3.56 7.96 -2.39 -0.02 3.54 16 33 H 0.15 1.31 8.14 -2.39 -0.02 1.30 16 34 H 0.17 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.46 4.42 8.96 -92.71 -0.83 3.58 16 Total: -1.00 -85.86 301.80 2.03 -83.84 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.31 Total: 9.20 kcal Atomic # 6 Polarization: 38.18 SS G_CDS: 6.68 Total: 44.86 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -6.82 Total: -114.48 kcal Atomic # 8 Polarization: -69.02 SS G_CDS: -0.17 Total: -69.18 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -85.86 2.03 -83.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443514.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.425 kcal (2) G-P(sol) polarization free energy of solvation -85.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds