Wall clock time and date at job start Mon Mar 30 2020 00:41:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09007 * 109.46721 * 2 1
4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3
5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1
6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1
7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2
8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4
10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4
11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4
12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3
13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1
14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1
15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2
16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2
17 17 N 1.46496 * 109.47455 * 179.97438 * 16 14 12
18 18 C 1.34772 * 124.17608 * 269.72824 * 17 16 14
19 19 O 1.21228 * 127.15796 * 359.97438 * 18 17 16
20 20 C 1.51586 * 105.68555 * 179.97438 * 18 17 16
21 21 N 1.47317 * 103.59369 * 0.31510 * 20 18 17
22 22 C 1.33796 * 124.18093 * 90.01385 * 17 16 14
23 23 O 1.21538 * 123.76877 * 359.97379 * 22 17 16
24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3
25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3
26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3
27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4
28 28 H 1.09001 * 109.46905 * 89.99959 * 13 12 2
29 29 H 1.09005 * 109.47144 * 209.99900 * 13 12 2
30 30 H 1.08993 * 109.47302 * 330.00087 * 13 12 2
31 31 H 1.09005 * 109.46708 * 299.99547 * 16 14 12
32 32 H 1.09000 * 109.47504 * 59.99304 * 16 14 12
33 33 H 1.08999 * 110.76124 * 241.71217 * 20 18 17
34 34 H 1.09000 * 110.56722 * 118.82668 * 20 18 17
35 35 H 0.96998 * 126.69552 * 179.77251 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.6533 -1.5885 -1.1313
6 6 1.6993 -0.2394 -2.4827
7 7 0.9427 0.8296 -2.6034
8 14 2.3226 -1.1197 -4.0078
9 1 1.8270 -0.4201 -5.2204
10 1 3.8076 -1.1190 -4.0076
11 1 1.8282 -2.5199 -4.0080
12 7 2.0183 -0.6905 1.1962
13 6 1.6644 -2.0931 1.4281
14 6 2.7931 -0.0354 2.0834
15 8 3.0865 1.1256 1.8912
16 6 3.2959 -0.7459 3.3136
17 7 4.1101 0.1747 4.1108
18 6 5.4419 0.3248 3.9685
19 8 6.1647 -0.2548 3.1867
20 6 5.8480 1.3692 4.9894
21 7 4.5801 1.7134 5.6558
22 6 3.6244 0.9665 5.0739
23 8 2.4513 1.0050 5.3890
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3633 0.5139 0.8899
27 1 0.7088 1.1611 -3.4845
28 1 2.4158 -2.7376 0.9718
29 1 1.6238 -2.2851 2.5003
30 1 0.6905 -2.3002 0.9847
31 1 2.4483 -1.0888 3.9070
32 1 3.9016 -1.6021 3.0167
33 1 6.2732 2.2446 4.4985
34 1 6.5558 0.9504 5.7048
35 1 4.4579 2.3540 6.3738
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000103443514.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:41:10
Heat of formation + Delta-G solvation = -93.262183 kcal
Electronic energy + Delta-G solvation = -21181.599790 eV
Core-core repulsion = 17794.167042 eV
Total energy + Delta-G solvation = -3387.432748 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 269.121 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-43.37554 -40.67802 -39.66870 -37.28703 -37.18663 -35.66295 -34.81938 -31.79735
-29.47823 -28.36036 -27.64039 -27.28838 -24.00154 -23.53687 -21.72669 -20.14453
-19.08076 -18.75381 -18.35712 -17.86908 -17.55777 -17.03765 -16.59741 -16.35105
-16.24525 -15.86762 -15.28631 -14.98837 -14.81099 -14.43807 -14.20346 -14.04757
-13.50113 -13.35146 -13.04590 -12.94251 -12.72307 -12.65146 -12.20255 -12.17034
-12.13592 -11.59224 -11.37877 -11.21606 -10.62939 -10.51500 -10.35500 -9.41146
-8.16265 -6.33379 0.61726 1.05315 1.40747 1.43634 1.50830 1.62734
1.86672 2.26921 2.34014 2.48959 3.03931 3.11588 3.56162 3.75015
4.06721 4.25756 4.32359 4.32551 4.44763 4.65040 4.67636 4.77328
4.85861 5.00846 5.04544 5.42024 5.55914 5.62943 5.82319 5.98405
6.01035 6.12591 6.34961 6.70464 6.73607 7.08302 7.21601 7.40277
8.88163
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.028295 B = 0.005123 C = 0.004815
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 989.326737 B = 5464.104028 C = 5813.974339
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.262 3.738
3 H 0.005 0.995
4 C -0.539 4.539
5 H 0.062 0.938
6 C 0.014 3.986
7 N -0.918 5.918
8 Si 0.967 3.033
9 H -0.283 1.283
10 H -0.279 1.279
11 H -0.260 1.260
12 N -0.595 5.595
13 C 0.075 3.925
14 C 0.479 3.521
15 O -0.599 6.599
16 C 0.109 3.891
17 N -0.570 5.570
18 C 0.512 3.488
19 O -0.504 6.504
20 C 0.080 3.920
21 N -0.706 5.706
22 C 0.699 3.301
23 O -0.585 6.585
24 H 0.068 0.932
25 H 0.052 0.948
26 H 0.017 0.983
27 H 0.265 0.735
28 H 0.063 0.937
29 H 0.098 0.902
30 H 0.075 0.925
31 H 0.145 0.855
32 H 0.145 0.855
33 H 0.148 0.852
34 H 0.174 0.826
35 H 0.456 0.544
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.341 -4.230 17.478 19.823
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.160 3.840
3 H 0.023 0.977
4 C -0.578 4.578
5 H 0.080 0.920
6 C -0.186 4.186
7 N -0.557 5.557
8 Si 0.792 3.208
9 H -0.208 1.208
10 H -0.204 1.204
11 H -0.185 1.185
12 N -0.326 5.326
13 C -0.066 4.066
14 C 0.266 3.734
15 O -0.481 6.481
16 C -0.017 4.017
17 N -0.315 5.315
18 C 0.302 3.698
19 O -0.375 6.375
20 C -0.046 4.046
21 N -0.371 5.371
22 C 0.399 3.601
23 O -0.462 6.462
24 H 0.087 0.913
25 H 0.071 0.929
26 H 0.036 0.964
27 H 0.074 0.926
28 H 0.081 0.919
29 H 0.116 0.884
30 H 0.094 0.906
31 H 0.163 0.837
32 H 0.163 0.837
33 H 0.165 0.835
34 H 0.191 0.809
35 H 0.303 0.697
Dipole moment (debyes) X Y Z Total
from point charges 8.138 -3.893 16.920 19.174
hybrid contribution -0.124 0.254 -1.059 1.096
sum 8.014 -3.640 15.861 18.139
Atomic orbital electron populations
1.21875 0.96948 1.00353 0.99874 1.18559 0.91753 0.92086 0.81651
0.97718 1.21530 1.32049 1.13161 0.91028 0.91987 1.25771 0.95015
0.95642 1.02122 1.70026 1.37244 1.23916 1.24539 0.85473 0.78296
0.79070 0.77953 1.20848 1.20421 1.18450 1.48222 1.48464 1.13727
1.22186 1.21955 1.02209 0.79885 1.02596 1.21458 0.79029 0.87186
0.85701 1.90621 1.60079 1.19406 1.77970 1.21596 0.98335 0.91634
0.90089 1.46038 1.10960 1.40052 1.34404 1.21808 0.80946 0.83016
0.83983 1.90810 1.57603 1.50422 1.38707 1.22709 0.88226 0.98619
0.95058 1.45280 1.06842 1.44483 1.40525 1.16007 0.85342 0.79434
0.79298 1.90976 1.16391 1.70585 1.68207 0.91318 0.92916 0.96394
0.92602 0.91852 0.88361 0.90610 0.83707 0.83750 0.83464 0.80925
0.69666
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.57 8.95 71.98 0.64 -5.92 16
2 C 0.26 14.08 2.64 44.24 0.12 14.20 16
3 H 0.00 0.31 6.90 -2.38 -0.02 0.30 16
4 C -0.54 -29.95 8.37 25.60 0.21 -29.74 16
5 H 0.06 3.32 7.65 -2.91 -0.02 3.30 16
6 C 0.01 0.78 5.30 84.66 0.45 1.23 16
7 N -0.92 -54.03 11.32 21.45 0.24 -53.78 16
8 Si 0.97 43.73 29.54 68.60 2.03 45.76 16
9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16
11 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16
12 N -0.60 -25.91 2.75 -826.81 -2.28 -28.19 16
13 C 0.08 2.33 9.48 127.77 1.21 3.54 16
14 C 0.48 20.71 7.74 87.66 0.68 21.39 16
15 O -0.60 -31.86 15.76 -3.03 -0.05 -31.91 16
16 C 0.11 3.25 4.73 85.63 0.41 3.65 16
17 N -0.57 -16.42 2.09 -777.20 -1.63 -18.04 16
18 C 0.51 13.05 8.31 87.94 0.73 13.78 16
19 O -0.50 -16.24 17.75 -2.87 -0.05 -16.29 16
20 C 0.08 0.98 7.97 85.76 0.68 1.66 16
21 N -0.71 -11.31 6.58 -480.28 -3.16 -14.47 16
22 C 0.70 19.52 8.62 179.44 1.55 21.07 16
23 O -0.58 -20.91 17.48 -3.84 -0.07 -20.98 16
24 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16
25 H 0.05 2.34 6.66 -2.39 -0.02 2.32 16
26 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16
27 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16
28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16
29 H 0.10 2.12 6.44 -2.38 -0.02 2.10 16
30 H 0.08 2.37 6.43 -2.39 -0.02 2.36 16
31 H 0.15 3.57 7.12 -2.38 -0.02 3.56 16
32 H 0.14 3.56 7.96 -2.39 -0.02 3.54 16
33 H 0.15 1.31 8.14 -2.39 -0.02 1.30 16
34 H 0.17 0.53 8.14 -2.39 -0.02 0.51 16
35 H 0.46 4.42 8.96 -92.71 -0.83 3.58 16
Total: -1.00 -85.86 301.80 2.03 -83.84
By element:
Atomic # 1 Polarization: 8.90 SS G_CDS: 0.31 Total: 9.20 kcal
Atomic # 6 Polarization: 38.18 SS G_CDS: 6.68 Total: 44.86 kcal
Atomic # 7 Polarization: -107.66 SS G_CDS: -6.82 Total: -114.48 kcal
Atomic # 8 Polarization: -69.02 SS G_CDS: -0.17 Total: -69.18 kcal
Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal
Total: -85.86 2.03 -83.84 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000103443514.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.425 kcal
(2) G-P(sol) polarization free energy of solvation -85.865 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.290 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.838 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.262 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds